Wall clock time and date at job start Mon Mar 30 2020 01:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46894 * 110.99975 * 2 1 4 4 C 1.50706 * 109.47149 * 293.95157 * 3 2 1 5 5 H 1.07994 * 120.00016 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99731 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00423 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99800 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47135 * 59.99838 * 8 6 4 10 10 H 1.48495 * 109.47013 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46735 * 299.99856 * 8 6 4 12 12 C 1.46902 * 110.99848 * 123.95509 * 2 1 3 13 13 C 1.52998 * 109.46940 * 163.85453 * 12 2 1 14 14 H 1.09003 * 110.27418 * 57.48525 * 13 12 2 15 15 C 1.54963 * 110.30838 * 179.57336 * 13 12 2 16 16 C 1.55465 * 100.92130 * 155.16018 * 15 13 12 17 17 C 1.54156 * 102.23751 * 326.18281 * 16 15 13 18 18 C 1.52920 * 109.51307 * 140.94642 * 17 16 15 19 19 C 1.53147 * 109.15454 * 176.51760 * 18 17 16 20 20 O 1.42911 * 109.38248 * 302.88190 * 19 18 17 21 21 C 1.42912 * 114.17294 * 61.41752 * 20 19 18 22 22 C 1.52935 * 109.50430 * 261.34054 * 17 16 15 23 23 O 1.42983 * 107.85236 * 21.13878 * 17 16 15 24 24 H 1.09001 * 109.46883 * 56.12904 * 1 2 3 25 25 H 1.09003 * 109.47109 * 296.12713 * 1 2 3 26 26 H 1.08997 * 109.47369 * 176.12514 * 1 2 3 27 27 H 1.08999 * 109.47439 * 53.95802 * 3 2 1 28 28 H 1.09005 * 109.46936 * 173.95783 * 3 2 1 29 29 H 0.96998 * 120.00137 * 179.97438 * 7 6 4 30 30 H 1.08992 * 109.47255 * 283.85444 * 12 2 1 31 31 H 1.09000 * 109.46795 * 43.85738 * 12 2 1 32 32 H 1.08997 * 111.12240 * 273.15677 * 15 13 12 33 33 H 1.09004 * 111.12200 * 37.30799 * 15 13 12 34 34 H 1.08998 * 110.90083 * 207.96396 * 16 15 13 35 35 H 1.08997 * 110.95062 * 84.42323 * 16 15 13 36 36 H 1.08996 * 109.52589 * 296.41857 * 18 17 16 37 37 H 1.08999 * 109.52663 * 56.61581 * 18 17 16 38 38 H 1.08998 * 109.48826 * 182.91524 * 19 18 17 39 39 H 1.09002 * 109.50244 * 62.86330 * 19 18 17 40 40 H 1.09000 * 109.48130 * 178.60913 * 21 20 19 41 41 H 1.08999 * 109.50148 * 58.56108 * 21 20 19 42 42 H 1.08995 * 109.52407 * 303.37113 * 22 17 16 43 43 H 1.09000 * 109.52055 * 63.56910 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0269 3.3494 -1.5285 7 7 2.7120 4.0019 -0.6149 8 14 1.5819 4.1872 -3.1377 9 1 0.1047 4.2236 -3.2849 10 1 2.1142 5.5735 -3.1377 11 1 2.1737 3.4303 -4.2700 12 6 1.9955 -0.7660 1.1376 13 6 3.4718 -1.0873 0.8966 14 1 4.0387 -0.1685 0.7464 15 6 4.0502 -1.8869 2.0914 16 6 5.2278 -2.6335 1.4037 17 6 4.6714 -2.8883 -0.0112 18 6 5.7838 -2.6882 -1.0412 19 6 5.2457 -3.0275 -2.4343 20 8 4.7477 -4.3670 -2.4370 21 6 3.6653 -4.5907 -1.5311 22 6 4.1362 -4.3182 -0.0996 23 8 3.6145 -1.9532 -0.2416 24 1 -0.3633 0.5728 -0.8533 25 1 -0.3633 0.4526 0.9227 26 1 -0.3634 -1.0253 -0.0694 27 1 1.5612 1.9273 0.8309 28 1 3.0798 1.3443 0.1082 29 1 2.9866 4.9180 -0.7769 30 1 1.8959 -0.1772 2.0493 31 1 1.4338 -1.6944 1.2415 32 1 4.4102 -1.2188 2.8737 33 1 3.3166 -2.5905 2.4851 34 1 5.4417 -3.5738 1.9117 35 1 6.1173 -2.0049 1.3635 36 1 6.1158 -1.6502 -1.0219 37 1 6.6216 -3.3440 -0.8047 38 1 6.0483 -2.9366 -3.1662 39 1 4.4401 -2.3395 -2.6908 40 1 3.3305 -5.6248 -1.6130 41 1 2.8410 -3.9211 -1.7765 42 1 4.9274 -5.0202 0.1635 43 1 3.2989 -4.4369 0.5882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878175073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:50 Heat of formation + Delta-G solvation = -94.700379 kcal Electronic energy + Delta-G solvation = -22153.847761 eV Core-core repulsion = 19005.726086 eV Total energy + Delta-G solvation = -3148.121675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.33421 -37.90501 -36.22793 -32.87007 -32.36560 -31.78732 -31.03187 -28.47922 -27.20982 -25.18661 -23.63658 -23.56669 -22.05539 -21.21140 -20.02603 -19.26920 -16.65946 -16.33518 -16.04260 -15.77286 -15.08883 -14.87475 -14.44939 -14.38665 -14.17200 -13.74586 -13.52660 -13.12335 -12.67098 -12.37232 -12.21604 -11.95566 -11.80146 -11.54461 -11.45383 -11.36911 -11.21077 -11.16665 -10.89917 -10.67932 -10.57181 -10.38841 -10.29542 -10.08876 -9.79072 -9.31327 -9.21543 -8.98165 -8.39069 -7.13897 -5.99503 -3.99716 3.36007 3.39481 3.43290 3.95787 4.03962 4.46074 4.58459 4.68451 4.79573 4.88946 5.12451 5.13138 5.23190 5.35303 5.40262 5.45345 5.52308 5.62631 5.73124 5.75247 5.77522 5.83064 5.88577 5.91129 5.96452 6.03357 6.08319 6.13354 6.19405 6.23419 6.36805 6.38344 6.54747 6.77807 7.30829 7.35162 7.35988 7.53025 7.85462 8.13977 8.26018 8.60890 9.07706 9.64023 11.11580 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019310 B = 0.005431 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.698491 B = 5154.069244 C = 5643.245720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.533 5.533 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.059 3.941 13 C 0.091 3.909 14 H 0.076 0.924 15 C -0.152 4.152 16 C -0.144 4.144 17 C 0.102 3.898 18 C -0.155 4.155 19 C 0.063 3.937 20 O -0.390 6.390 21 C 0.064 3.936 22 C -0.150 4.150 23 O -0.339 6.339 24 H 0.074 0.926 25 H 0.008 0.992 26 H 0.043 0.957 27 H -0.012 1.012 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.464 -15.395 4.371 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.257 5.257 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.541 5.541 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.070 4.070 13 C 0.033 3.967 14 H 0.094 0.906 15 C -0.190 4.190 16 C -0.181 4.181 17 C 0.062 3.938 18 C -0.192 4.192 19 C -0.014 4.014 20 O -0.309 6.309 21 C -0.013 4.013 22 C -0.188 4.188 23 O -0.258 6.258 24 H 0.093 0.907 25 H 0.026 0.974 26 H 0.062 0.938 27 H 0.005 0.995 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.648 -15.569 3.663 16.656 hybrid contribution -0.373 1.263 0.431 1.386 sum 4.275 -14.306 4.094 15.482 Atomic orbital electron populations 1.22189 0.88908 0.99419 1.00360 1.62057 1.06571 1.17579 1.39464 1.19773 0.95443 0.81673 0.96459 1.21131 1.34536 0.96765 1.01718 0.91942 1.24976 0.95381 0.97352 0.96920 1.69947 1.38611 1.11460 1.34115 0.86576 0.78688 0.78292 0.83958 1.20311 1.21405 1.20155 1.22123 0.93891 0.97897 0.93058 1.23052 0.96640 0.93243 0.83778 0.90624 1.23323 0.97570 0.99487 0.98652 1.23155 0.98754 1.01108 0.95112 1.21804 0.88179 0.89927 0.93919 1.22455 0.97665 1.02803 0.96326 1.22532 0.98993 0.83809 0.96016 1.87841 1.51487 1.29534 1.62000 1.22494 0.89602 1.01139 0.88050 1.22422 1.01792 0.95897 0.98719 1.88600 1.52193 1.45844 1.39202 0.90707 0.97397 0.93780 0.99461 0.95156 0.92967 0.94740 0.91875 0.90176 0.90699 0.90475 0.90525 0.90254 0.90876 0.89383 0.91623 0.89585 0.91946 0.90858 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 9.35 60.07 0.56 1.36 16 2 N -0.53 -11.87 4.67 -244.37 -1.14 -13.01 16 3 C 0.19 5.06 4.57 -4.98 -0.02 5.04 16 4 C -0.50 -14.39 8.46 -34.44 -0.29 -14.68 16 5 H 0.06 1.78 7.12 -52.49 -0.37 1.41 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.06 1.08 4.69 -3.82 -0.02 1.06 16 13 C 0.09 1.54 3.44 -25.70 -0.09 1.45 16 14 H 0.08 1.48 6.59 -51.93 -0.34 1.14 16 15 C -0.15 -1.92 6.58 -24.38 -0.16 -2.08 16 16 C -0.14 -1.66 6.07 -24.82 -0.15 -1.81 16 17 C 0.10 1.38 0.80 -90.09 -0.07 1.31 16 18 C -0.15 -2.03 4.99 -26.70 -0.13 -2.17 16 19 C 0.06 0.89 6.72 37.23 0.25 1.14 16 20 O -0.39 -5.69 10.76 -35.23 -0.38 -6.07 16 21 C 0.06 0.83 6.72 37.23 0.25 1.08 16 22 C -0.15 -1.80 4.99 -26.69 -0.13 -1.93 16 23 O -0.34 -5.93 9.55 -35.23 -0.34 -6.27 16 24 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 25 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.04 0.77 8.08 -51.93 -0.42 0.35 16 27 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 28 H 0.03 0.85 6.40 -51.93 -0.33 0.52 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.03 0.62 8.05 -51.93 -0.42 0.20 16 31 H 0.06 1.04 7.95 -51.93 -0.41 0.63 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 34 H 0.08 0.74 7.78 -51.93 -0.40 0.34 16 35 H 0.08 0.86 7.83 -51.93 -0.41 0.45 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.07 7.91 -51.93 -0.41 0.66 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.92 7.91 -51.93 -0.41 0.51 16 42 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 333.94 15.07 5.03 5.03 Total: -1.00 -31.20 333.94 -8.85 -40.05 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -7.64 Total: -1.70 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -0.11 Total: -8.76 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: -0.40 Total: -39.25 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.72 Total: -12.34 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.20 -8.85 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878175073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.647 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds