Wall clock time and date at job start Mon Mar 30 2020 01:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46894 * 110.99975 * 2 1 4 4 C 1.50706 * 109.47149 * 293.95157 * 3 2 1 5 5 H 1.07994 * 120.00016 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99731 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00423 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99800 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47135 * 59.99838 * 8 6 4 10 10 H 1.48495 * 109.47013 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46735 * 299.99856 * 8 6 4 12 12 C 1.46902 * 110.99848 * 123.95509 * 2 1 3 13 13 C 1.52998 * 109.46940 * 163.85453 * 12 2 1 14 14 H 1.09003 * 110.27418 * 57.48525 * 13 12 2 15 15 C 1.54963 * 110.30838 * 179.57336 * 13 12 2 16 16 C 1.55465 * 100.92130 * 155.16018 * 15 13 12 17 17 C 1.54156 * 102.23751 * 326.18281 * 16 15 13 18 18 C 1.52920 * 109.51307 * 140.94642 * 17 16 15 19 19 C 1.53147 * 109.15454 * 176.51760 * 18 17 16 20 20 O 1.42911 * 109.38248 * 302.88190 * 19 18 17 21 21 C 1.42912 * 114.17294 * 61.41752 * 20 19 18 22 22 C 1.52935 * 109.50430 * 261.34054 * 17 16 15 23 23 O 1.42983 * 107.85236 * 21.13878 * 17 16 15 24 24 H 1.09001 * 109.46883 * 56.12904 * 1 2 3 25 25 H 1.09003 * 109.47109 * 296.12713 * 1 2 3 26 26 H 1.08997 * 109.47369 * 176.12514 * 1 2 3 27 27 H 1.08999 * 109.47439 * 53.95802 * 3 2 1 28 28 H 1.09005 * 109.46936 * 173.95783 * 3 2 1 29 29 H 0.96998 * 120.00137 * 179.97438 * 7 6 4 30 30 H 1.08992 * 109.47255 * 283.85444 * 12 2 1 31 31 H 1.09000 * 109.46795 * 43.85738 * 12 2 1 32 32 H 1.08997 * 111.12240 * 273.15677 * 15 13 12 33 33 H 1.09004 * 111.12200 * 37.30799 * 15 13 12 34 34 H 1.08998 * 110.90083 * 207.96396 * 16 15 13 35 35 H 1.08997 * 110.95062 * 84.42323 * 16 15 13 36 36 H 1.08996 * 109.52589 * 296.41857 * 18 17 16 37 37 H 1.08999 * 109.52663 * 56.61581 * 18 17 16 38 38 H 1.08998 * 109.48826 * 182.91524 * 19 18 17 39 39 H 1.09002 * 109.50244 * 62.86330 * 19 18 17 40 40 H 1.09000 * 109.48130 * 178.60913 * 21 20 19 41 41 H 1.08999 * 109.50148 * 58.56108 * 21 20 19 42 42 H 1.08995 * 109.52407 * 303.37113 * 22 17 16 43 43 H 1.09000 * 109.52055 * 63.56910 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0269 3.3494 -1.5285 7 7 2.7120 4.0019 -0.6149 8 14 1.5819 4.1872 -3.1377 9 1 0.1047 4.2236 -3.2849 10 1 2.1142 5.5735 -3.1377 11 1 2.1737 3.4303 -4.2700 12 6 1.9955 -0.7660 1.1376 13 6 3.4718 -1.0873 0.8966 14 1 4.0387 -0.1685 0.7464 15 6 4.0502 -1.8869 2.0914 16 6 5.2278 -2.6335 1.4037 17 6 4.6714 -2.8883 -0.0112 18 6 5.7838 -2.6882 -1.0412 19 6 5.2457 -3.0275 -2.4343 20 8 4.7477 -4.3670 -2.4370 21 6 3.6653 -4.5907 -1.5311 22 6 4.1362 -4.3182 -0.0996 23 8 3.6145 -1.9532 -0.2416 24 1 -0.3633 0.5728 -0.8533 25 1 -0.3633 0.4526 0.9227 26 1 -0.3634 -1.0253 -0.0694 27 1 1.5612 1.9273 0.8309 28 1 3.0798 1.3443 0.1082 29 1 2.9866 4.9180 -0.7769 30 1 1.8959 -0.1772 2.0493 31 1 1.4338 -1.6944 1.2415 32 1 4.4102 -1.2188 2.8737 33 1 3.3166 -2.5905 2.4851 34 1 5.4417 -3.5738 1.9117 35 1 6.1173 -2.0049 1.3635 36 1 6.1158 -1.6502 -1.0219 37 1 6.6216 -3.3440 -0.8047 38 1 6.0483 -2.9366 -3.1662 39 1 4.4401 -2.3395 -2.6908 40 1 3.3305 -5.6248 -1.6130 41 1 2.8410 -3.9211 -1.7765 42 1 4.9274 -5.0202 0.1635 43 1 3.2989 -4.4369 0.5882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878175073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:50 Heat of formation + Delta-G solvation = -116.138939 kcal Electronic energy + Delta-G solvation = -22154.777407 eV Core-core repulsion = 19005.726086 eV Total energy + Delta-G solvation = -3149.051320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.45006 -39.14643 -37.86668 -34.74723 -33.78485 -32.98032 -32.05769 -29.95037 -29.14145 -26.61357 -25.30626 -24.66616 -23.46041 -22.33121 -21.61865 -20.45358 -18.63088 -17.56219 -17.32109 -16.91065 -16.77864 -16.19368 -15.97293 -15.81080 -15.40611 -15.33887 -14.93211 -14.30286 -14.09316 -13.93655 -13.61585 -13.24711 -13.24112 -12.94682 -12.78726 -12.71990 -12.59606 -12.47207 -12.43327 -12.28975 -12.21592 -11.92753 -11.70436 -11.42220 -11.26158 -11.14221 -10.62011 -10.39169 -10.27857 -8.94351 -8.21397 -6.30628 1.38365 1.41955 1.49762 2.39056 2.81934 2.98161 3.10793 3.36194 3.55802 3.73267 3.78441 3.98010 4.08569 4.12725 4.23437 4.36418 4.38889 4.45338 4.50335 4.59339 4.67907 4.73756 4.75573 4.77660 4.79284 4.85044 4.88091 4.98778 5.01891 5.06735 5.11644 5.14771 5.21316 5.24204 5.29965 5.36022 5.63874 6.05796 6.26882 6.33474 6.37474 6.68363 6.84999 7.38545 8.89575 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019310 B = 0.005431 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.698491 B = 5154.069244 C = 5643.245720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.547 5.547 3 C 0.211 3.789 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.967 3.033 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.271 1.271 12 C 0.060 3.940 13 C 0.088 3.912 14 H 0.035 0.965 15 C -0.141 4.141 16 C -0.136 4.136 17 C 0.088 3.912 18 C -0.153 4.153 19 C 0.063 3.937 20 O -0.398 6.398 21 C 0.059 3.941 22 C -0.143 4.143 23 O -0.368 6.368 24 H 0.054 0.946 25 H 0.012 0.988 26 H 0.076 0.924 27 H -0.041 1.041 28 H 0.005 0.995 29 H 0.264 0.736 30 H 0.035 0.965 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.031 0.969 40 H 0.112 0.888 41 H 0.035 0.965 42 H 0.097 0.903 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.657 -17.361 4.771 18.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.271 5.271 3 C 0.084 3.916 4 C -0.562 4.562 5 H 0.076 0.924 6 C -0.195 4.195 7 N -0.575 5.575 8 Si 0.791 3.209 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.197 1.197 12 C -0.069 4.069 13 C 0.030 3.970 14 H 0.053 0.947 15 C -0.179 4.179 16 C -0.173 4.173 17 C 0.049 3.951 18 C -0.191 4.191 19 C -0.013 4.013 20 O -0.317 6.317 21 C -0.018 4.018 22 C -0.180 4.180 23 O -0.288 6.288 24 H 0.073 0.927 25 H 0.030 0.970 26 H 0.095 0.905 27 H -0.023 1.023 28 H 0.023 0.977 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.127 0.873 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.050 0.950 40 H 0.130 0.870 41 H 0.054 0.946 42 H 0.115 0.885 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.833 -17.556 4.072 18.659 hybrid contribution -0.439 1.825 0.299 1.900 sum 4.394 -15.732 4.371 16.909 Atomic orbital electron populations 1.22190 0.87611 1.01140 0.99670 1.61979 1.07912 1.15168 1.41998 1.19373 0.93771 0.83758 0.94651 1.21434 1.34782 0.97465 1.02469 0.92387 1.25879 0.95037 0.97988 1.00621 1.70070 1.39386 1.11881 1.36143 0.85481 0.78912 0.77248 0.79262 1.19130 1.20532 1.19667 1.22238 0.95057 0.98041 0.91538 1.22918 0.95360 0.92678 0.86038 0.94725 1.23277 0.98215 0.99395 0.96968 1.23161 0.98061 1.02438 0.93638 1.22125 0.87576 0.90185 0.95245 1.22456 0.98406 1.02494 0.95725 1.22509 0.98337 0.83180 0.97305 1.87827 1.51868 1.29278 1.62759 1.22632 0.88481 1.01934 0.88718 1.22398 1.02839 0.94914 0.97892 1.88576 1.53709 1.46575 1.39925 0.92712 0.96965 0.90512 1.02324 0.97687 0.92684 0.94653 0.89408 0.89217 0.88716 0.87307 0.90513 0.91694 0.88373 0.87759 0.95046 0.87048 0.94640 0.88453 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.69 9.35 127.69 1.19 2.89 16 2 N -0.55 -24.92 4.67 -927.04 -4.33 -29.25 16 3 C 0.21 11.67 4.57 85.56 0.39 12.06 16 4 C -0.52 -30.92 8.46 25.60 0.22 -30.70 16 5 H 0.06 3.40 7.12 -2.91 -0.02 3.38 16 6 C 0.00 0.15 5.46 84.65 0.46 0.61 16 7 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 8 Si 0.97 45.62 29.54 68.60 2.03 47.64 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.06 2.16 4.69 86.30 0.40 2.57 16 13 C 0.09 3.02 3.44 31.27 0.11 3.13 16 14 H 0.03 1.45 6.59 -2.39 -0.02 1.44 16 15 C -0.14 -3.26 6.58 32.11 0.21 -3.04 16 16 C -0.14 -2.76 6.07 31.83 0.19 -2.57 16 17 C 0.09 2.26 0.80 -10.45 -0.01 2.25 16 18 C -0.15 -3.90 4.99 30.62 0.15 -3.74 16 19 C 0.06 1.78 6.72 72.03 0.48 2.27 16 20 O -0.40 -11.19 10.76 -148.98 -1.60 -12.79 16 21 C 0.06 1.44 6.72 72.03 0.48 1.92 16 22 C -0.14 -3.00 4.99 30.62 0.15 -2.85 16 23 O -0.37 -12.96 9.55 -148.98 -1.42 -14.39 16 24 H 0.05 2.39 6.76 -2.39 -0.02 2.37 16 25 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 26 H 0.08 2.56 8.08 -2.39 -0.02 2.54 16 27 H -0.04 -2.43 8.12 -2.39 -0.02 -2.45 16 28 H 0.01 0.30 6.40 -2.38 -0.02 0.29 16 29 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.04 1.28 8.05 -2.39 -0.02 1.26 16 31 H 0.09 2.74 7.95 -2.39 -0.02 2.72 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.09 1.84 8.05 -2.38 -0.02 1.82 16 34 H 0.11 1.57 7.78 -2.39 -0.02 1.56 16 35 H 0.08 1.57 7.83 -2.39 -0.02 1.55 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.03 1.08 7.91 -2.39 -0.02 1.06 16 40 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.04 1.05 7.91 -2.39 -0.02 1.03 16 42 H 0.10 1.62 8.11 -2.39 -0.02 1.60 16 43 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -69.72 333.94 0.36 -69.36 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.96 Total: 11.72 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 4.45 Total: -15.21 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -4.04 Total: -86.34 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -3.03 Total: -27.18 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -69.72 0.36 -69.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878175073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.781 kcal (2) G-P(sol) polarization free energy of solvation -69.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds