Wall clock time and date at job start Mon Mar 30 2020 01:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99870 * 2 1 4 4 C 1.50697 * 109.46891 * 293.95675 * 3 2 1 5 5 H 1.07991 * 120.00449 * 359.72239 * 4 3 2 6 6 C 1.37885 * 119.99686 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00035 * 179.72339 * 6 4 3 8 8 Si 1.86803 * 119.99853 * 359.72191 * 6 4 3 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 C 1.46895 * 111.00270 * 123.95438 * 2 1 3 13 13 C 1.53007 * 109.47110 * 66.04593 * 12 2 1 14 14 H 1.09000 * 110.53929 * 305.70231 * 13 12 2 15 15 C 1.55020 * 110.60826 * 182.84764 * 13 12 2 16 16 C 1.55056 * 102.01703 * 204.74379 * 15 13 12 17 17 C 1.53835 * 104.13132 * 20.64660 * 16 15 13 18 18 C 1.52880 * 109.75046 * 121.67743 * 17 16 15 19 19 C 1.53154 * 109.16160 * 176.92018 * 18 17 16 20 20 O 1.42910 * 109.38126 * 302.92846 * 19 18 17 21 21 C 1.42911 * 114.16220 * 61.44714 * 20 19 18 22 22 C 1.52887 * 109.74254 * 242.45684 * 17 16 15 23 23 O 1.43444 * 107.61575 * 2.06057 * 17 16 15 24 24 H 1.08997 * 109.47233 * 59.99809 * 1 2 3 25 25 H 1.08998 * 109.46536 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46977 * 299.99485 * 1 2 3 27 27 H 1.08998 * 109.47046 * 173.95176 * 3 2 1 28 28 H 1.09001 * 109.47014 * 53.95377 * 3 2 1 29 29 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.47264 * 186.04923 * 12 2 1 31 31 H 1.09010 * 109.47207 * 306.04860 * 12 2 1 32 32 H 1.09007 * 110.90582 * 322.82547 * 15 13 12 33 33 H 1.09000 * 110.90629 * 86.42242 * 15 13 12 34 34 H 1.08998 * 110.36209 * 262.03730 * 16 15 13 35 35 H 1.08992 * 110.70995 * 139.42807 * 16 15 13 36 36 H 1.08998 * 109.52255 * 296.81808 * 18 17 16 37 37 H 1.08991 * 109.52428 * 57.01405 * 18 17 16 38 38 H 1.08997 * 109.48998 * 182.95983 * 19 18 17 39 39 H 1.08996 * 109.50114 * 62.90812 * 19 18 17 40 40 H 1.08997 * 109.48683 * 178.57509 * 21 20 19 41 41 H 1.08998 * 109.50404 * 58.52464 * 21 20 19 42 42 H 1.08997 * 109.52690 * 302.97586 * 22 17 16 43 43 H 1.09004 * 109.52029 * 63.16749 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0781 1.5100 -2.0504 6 6 2.0276 3.3492 -1.5289 7 7 1.7194 3.9371 -2.6642 8 14 2.9947 4.2782 -0.2284 9 1 4.4482 4.0656 -0.4464 10 1 2.6867 5.7277 -0.3238 11 1 2.6182 3.7798 1.1188 12 6 1.9955 -0.7660 1.1375 13 6 1.6316 -2.2427 0.9703 14 1 0.5569 -2.3581 0.8294 15 6 2.1131 -3.0652 2.1929 16 6 2.2580 -4.4860 1.5892 17 6 2.3773 -4.2406 0.0753 18 6 3.6926 -4.8245 -0.4407 19 6 3.7623 -4.6412 -1.9596 20 8 2.6259 -5.2614 -2.5648 21 6 1.3723 -4.7085 -2.1587 22 6 1.2001 -4.8950 -0.6483 23 8 2.3548 -2.8222 -0.1376 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 3.0797 1.3445 0.1083 28 1 1.5611 1.9274 0.8309 29 1 1.9939 4.8532 -2.8261 30 1 3.0798 -0.6610 1.1756 31 1 1.5612 -0.3872 2.0628 32 1 3.0734 -2.6978 2.5550 33 1 1.3680 -3.0519 2.9884 34 1 1.3740 -5.0841 1.8107 35 1 3.1545 -4.9763 1.9684 36 1 4.5295 -4.3065 0.0274 37 1 3.7392 -5.8863 -0.1994 38 1 4.6738 -5.1024 -2.3401 39 1 3.7661 -3.5777 -2.1980 40 1 0.5634 -5.2180 -2.6824 41 1 1.3484 -3.6456 -2.3989 42 1 1.1739 -5.9589 -0.4132 43 1 0.2695 -4.4269 -0.3273 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878175074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:52 Heat of formation + Delta-G solvation = -112.601656 kcal Electronic energy + Delta-G solvation = -22008.321279 eV Core-core repulsion = 18859.423346 eV Total energy + Delta-G solvation = -3148.897932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.49307 -39.17116 -37.94873 -34.77108 -33.75578 -32.96161 -32.09581 -30.49339 -29.01191 -27.03727 -25.19550 -24.70945 -23.13676 -22.04562 -21.63121 -20.58277 -19.01483 -17.58979 -17.32562 -16.96719 -16.61108 -16.22493 -16.08274 -15.86377 -15.63631 -15.40028 -14.79584 -14.64594 -14.28156 -13.89306 -13.59943 -13.35541 -13.23629 -13.02278 -12.73688 -12.69217 -12.65196 -12.42997 -12.34898 -12.29314 -12.15079 -11.93574 -11.65434 -11.43849 -11.32624 -11.17062 -10.79582 -10.45926 -10.34860 -8.97228 -8.29244 -6.32834 1.33053 1.34893 1.45474 2.33298 2.85630 2.96504 3.03680 3.23201 3.60772 3.71771 3.76539 4.02945 4.07048 4.09186 4.18557 4.34711 4.37158 4.41357 4.43221 4.57794 4.61921 4.67803 4.72038 4.76521 4.78345 4.81810 4.88548 4.93759 4.97111 4.99859 5.04970 5.09617 5.16619 5.20958 5.23095 5.34166 5.52019 5.97255 6.20519 6.25099 6.39230 6.66442 6.73441 7.30635 8.87687 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023113 B = 0.004869 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.159861 B = 5749.762936 C = 6204.205933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.546 5.546 3 C 0.173 3.827 4 C -0.517 4.517 5 H 0.034 0.966 6 C 0.006 3.994 7 N -0.949 5.949 8 Si 0.950 3.050 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.250 1.250 12 C 0.058 3.942 13 C 0.083 3.917 14 H 0.068 0.932 15 C -0.143 4.143 16 C -0.135 4.135 17 C 0.086 3.914 18 C -0.138 4.138 19 C 0.057 3.943 20 O -0.400 6.400 21 C 0.059 3.941 22 C -0.157 4.157 23 O -0.371 6.371 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.022 0.978 27 H 0.024 0.976 28 H -0.010 1.010 29 H 0.267 0.733 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.031 0.969 40 H 0.105 0.895 41 H 0.031 0.969 42 H 0.096 0.904 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.366 -20.665 12.448 24.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.270 5.270 3 C 0.046 3.954 4 C -0.555 4.555 5 H 0.052 0.948 6 C -0.191 4.191 7 N -0.590 5.590 8 Si 0.773 3.227 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.174 1.174 12 C -0.070 4.070 13 C 0.025 3.975 14 H 0.086 0.914 15 C -0.181 4.181 16 C -0.172 4.172 17 C 0.047 3.953 18 C -0.175 4.175 19 C -0.019 4.019 20 O -0.319 6.319 21 C -0.017 4.017 22 C -0.195 4.195 23 O -0.291 6.291 24 H 0.062 0.938 25 H 0.094 0.906 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.008 0.992 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.050 0.950 40 H 0.123 0.877 41 H 0.049 0.951 42 H 0.114 0.886 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.648 -20.773 11.612 23.855 hybrid contribution -0.136 1.617 0.734 1.781 sum 1.512 -19.156 12.346 22.840 Atomic orbital electron populations 1.22192 0.87631 1.00835 0.99868 1.61761 1.08115 1.14573 1.42571 1.19929 0.94869 0.85886 0.94713 1.21265 1.35039 0.97487 1.01728 0.94800 1.25887 0.96973 0.98428 0.97802 1.70059 1.48713 1.13968 1.26242 0.85676 0.79307 0.77645 0.80060 1.19107 1.20503 1.17359 1.22215 1.00358 0.92560 0.91829 1.23201 0.95899 0.92066 0.86297 0.91433 1.23177 1.03030 0.94536 0.97322 1.22979 1.04447 0.97337 0.92447 1.22109 0.95373 0.82049 0.95783 1.22266 0.96891 1.02302 0.96063 1.22623 0.89070 0.97050 0.93172 1.87833 1.14817 1.60657 1.68600 1.22573 0.86034 0.97820 0.95287 1.22568 0.98878 1.02297 0.95733 1.89061 1.75734 1.18486 1.45823 0.93778 0.90574 0.95981 0.95827 0.99212 0.92411 0.91348 0.92853 0.90319 0.88324 0.88982 0.88844 0.90001 0.88182 0.87376 0.95046 0.87693 0.95095 0.88598 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 9.18 127.69 1.17 2.85 16 2 N -0.55 -23.56 4.75 -927.04 -4.41 -27.96 16 3 C 0.17 8.62 3.79 85.56 0.32 8.95 16 4 C -0.52 -31.10 9.06 25.60 0.23 -30.87 16 5 H 0.03 2.29 7.36 -2.92 -0.02 2.27 16 6 C 0.01 0.37 5.47 84.66 0.46 0.83 16 7 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 8 Si 0.95 44.95 27.47 68.60 1.88 46.84 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 12 C 0.06 1.92 4.70 86.31 0.41 2.33 16 13 C 0.08 2.22 3.20 31.29 0.10 2.32 16 14 H 0.07 1.78 6.27 -2.39 -0.01 1.77 16 15 C -0.14 -2.59 6.61 31.99 0.21 -2.38 16 16 C -0.13 -2.12 6.27 31.58 0.20 -1.92 16 17 C 0.09 1.90 0.72 -10.59 -0.01 1.89 16 18 C -0.14 -2.81 4.92 30.61 0.15 -2.66 16 19 C 0.06 1.44 6.72 72.03 0.48 1.92 16 20 O -0.40 -11.03 10.76 -148.98 -1.60 -12.64 16 21 C 0.06 1.52 6.72 72.03 0.48 2.00 16 22 C -0.16 -3.25 4.87 30.61 0.15 -3.10 16 23 O -0.37 -11.50 9.74 -148.98 -1.45 -12.95 16 24 H 0.04 2.00 6.86 -2.39 -0.02 1.99 16 25 H 0.08 2.48 6.22 -2.39 -0.01 2.47 16 26 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 27 H 0.02 1.17 7.37 -2.39 -0.02 1.15 16 28 H -0.01 -0.47 7.17 -2.39 -0.02 -0.49 16 29 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 30 H 0.07 2.32 7.93 -2.39 -0.02 2.30 16 31 H 0.05 1.56 8.12 -2.38 -0.02 1.54 16 32 H 0.08 1.43 8.06 -2.38 -0.02 1.41 16 33 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 1.14 7.68 -2.39 -0.02 1.12 16 35 H 0.09 1.19 7.69 -2.39 -0.02 1.17 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.03 0.98 7.90 -2.39 -0.02 0.96 16 40 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.03 0.98 7.90 -2.39 -0.02 0.97 16 42 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.08 1.55 8.07 -2.38 -0.02 1.53 16 Total: -1.00 -72.43 329.54 0.00 -72.44 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.90 Total: 12.65 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 4.37 Total: -17.82 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -4.11 Total: -88.51 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -3.05 Total: -25.59 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal Total: -72.43 0.00 -72.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878175074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.166 kcal (2) G-P(sol) polarization free energy of solvation -72.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds