Wall clock time and date at job start Mon Mar 30 2020 00:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46372 * 2 1 4 4 C 1.50700 * 109.47203 * 240.00318 * 2 1 3 5 5 H 1.07998 * 119.99964 * 239.99874 * 4 2 1 6 6 C 1.37875 * 119.99976 * 59.99851 * 4 2 1 7 7 N 1.31512 * 120.00421 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99987 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47042 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47211 * 119.99908 * 8 6 4 11 11 H 1.48500 * 109.46960 * 240.00182 * 8 6 4 12 12 N 1.46499 * 109.47051 * 119.99861 * 2 1 3 13 13 C 1.34775 * 120.00164 * 275.00141 * 12 2 1 14 14 O 1.21279 * 120.00080 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99997 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.47031 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.48038 * 54.98024 * 16 15 13 18 18 C 1.53095 * 109.47563 * 175.00024 * 16 15 13 19 19 C 1.53181 * 109.15940 * 177.60526 * 18 16 15 20 20 C 1.53176 * 109.03560 * 303.01673 * 19 18 16 21 21 C 1.52997 * 109.52567 * 176.88742 * 20 19 18 22 22 C 1.53006 * 109.52405 * 297.07642 * 20 19 18 23 23 C 1.53095 * 109.16286 * 56.98068 * 20 19 18 24 24 O 1.42895 * 109.48951 * 294.94612 * 16 15 13 25 25 H 1.08991 * 109.47697 * 299.99376 * 1 2 3 26 26 H 1.09001 * 109.47554 * 60.00329 * 1 2 3 27 27 H 1.09003 * 109.46672 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00769 * 179.97438 * 7 6 4 29 29 H 0.97002 * 119.99311 * 95.00260 * 12 2 1 30 30 H 1.09007 * 109.47159 * 59.99943 * 15 13 12 31 31 H 1.09002 * 109.46880 * 300.00089 * 15 13 12 32 32 H 1.08994 * 109.52897 * 57.70046 * 18 16 15 33 33 H 1.09002 * 109.52549 * 297.50206 * 18 16 15 34 34 H 1.08996 * 109.54405 * 183.15389 * 19 18 16 35 35 H 1.08999 * 109.61813 * 62.92653 * 19 18 16 36 36 H 1.09001 * 109.46900 * 60.00209 * 21 20 19 37 37 H 1.09001 * 109.47505 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.47038 * 299.99894 * 21 20 19 39 39 H 1.09002 * 109.46917 * 59.99913 * 22 20 19 40 40 H 1.09001 * 109.47550 * 179.97438 * 22 20 19 41 41 H 1.08998 * 109.46837 * 300.00271 * 22 20 19 42 42 H 1.08995 * 109.48092 * 62.37615 * 23 20 19 43 43 H 1.09004 * 109.48253 * 182.40879 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 3.1465 -2.2868 -3.6039 10 1 1.1661 -1.5865 -4.8161 11 1 3.1466 -0.1871 -4.8164 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8581 1.1584 2.4117 15 6 2.6499 -0.7285 3.5875 16 6 2.7006 0.2544 4.7588 17 1 1.7206 0.7128 4.8914 18 6 3.0914 -0.4935 6.0362 19 6 3.1984 0.5065 7.1916 20 6 4.2130 1.5923 6.8201 21 6 4.2717 2.6398 7.9337 22 6 5.5945 0.9604 6.6376 23 6 3.7789 2.2596 5.5124 24 8 3.6689 1.2697 4.4877 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7087 1.1614 -3.4844 29 1 2.2490 -1.6318 1.1525 30 1 3.6493 -1.1203 3.3979 31 1 1.9777 -1.5509 3.8325 32 1 4.0529 -0.9858 5.8904 33 1 2.3310 -1.2389 6.2691 34 1 3.5308 -0.0104 8.0917 35 1 2.2252 0.9632 7.3716 36 1 4.5755 2.1629 8.8655 37 1 4.9936 3.4123 7.6684 38 1 3.2876 3.0909 8.0604 39 1 5.5515 0.2165 5.8421 40 1 6.3157 1.7336 6.3729 41 1 5.9003 0.4807 7.5674 42 1 2.8131 2.7443 5.6548 43 1 4.5198 3.0040 5.2207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878534517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:39 Heat of formation + Delta-G solvation = -112.425274 kcal Electronic energy + Delta-G solvation = -21416.627332 eV Core-core repulsion = 18267.737048 eV Total energy + Delta-G solvation = -3148.890284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.05621 -38.51173 -35.37858 -34.58850 -33.04688 -32.25708 -29.96487 -28.35714 -27.43603 -25.91588 -25.20206 -24.23810 -21.86303 -20.69022 -19.24056 -18.89932 -16.99325 -16.32811 -15.87561 -15.43563 -15.14369 -15.04434 -14.51708 -14.27605 -14.10496 -13.67599 -13.28091 -12.73938 -12.62264 -12.36313 -12.27806 -12.05866 -11.95139 -11.85444 -11.58308 -11.47569 -11.08243 -10.97981 -10.90828 -10.87018 -10.65276 -10.49567 -10.24232 -10.19144 -10.13534 -9.17899 -8.97549 -8.82100 -8.49155 -7.77979 -6.07306 -4.16113 3.26637 3.34182 3.37139 3.56640 3.96621 4.15775 4.41426 4.53143 4.63109 4.69672 4.93946 5.07303 5.18170 5.24808 5.34333 5.41557 5.46449 5.52939 5.56124 5.63925 5.71137 5.74906 5.79156 5.81707 5.84204 5.92690 5.96830 6.05453 6.16029 6.21427 6.35658 6.88836 7.02826 7.22478 7.48439 7.57060 7.65532 7.76921 7.99509 8.21720 8.78563 8.86618 9.28152 9.52244 10.98756 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039429 B = 0.003591 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.972707 B = 7794.504580 C = 7828.969115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.715 5.715 13 C 0.502 3.498 14 O -0.545 6.545 15 C -0.138 4.138 16 C 0.109 3.891 17 H 0.063 0.937 18 C -0.153 4.153 19 C -0.109 4.109 20 C -0.104 4.104 21 C -0.139 4.139 22 C -0.136 4.136 23 C 0.074 3.926 24 O -0.358 6.358 25 H 0.013 0.987 26 H 0.089 0.911 27 H 0.025 0.975 28 H 0.263 0.737 29 H 0.387 0.613 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.395 -2.493 19.543 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.363 5.363 13 C 0.287 3.713 14 O -0.423 6.423 15 C -0.178 4.178 16 C 0.051 3.949 17 H 0.081 0.919 18 C -0.190 4.190 19 C -0.147 4.147 20 C -0.104 4.104 21 C -0.197 4.197 22 C -0.194 4.194 23 C -0.003 4.003 24 O -0.276 6.276 25 H 0.033 0.967 26 H 0.107 0.893 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.219 0.781 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.204 -1.513 19.232 19.981 hybrid contribution 0.243 -0.946 -0.631 1.162 sum 5.447 -2.458 18.602 19.538 Atomic orbital electron populations 1.22068 0.98660 0.98953 1.00784 1.18696 0.90867 0.94024 0.80194 0.93466 1.21283 1.32161 1.13105 0.90415 0.92084 1.24898 0.94880 0.94984 0.99057 1.69916 1.36051 1.22555 1.23665 0.86404 0.78568 0.79534 0.82641 1.19753 1.20927 1.20899 1.46510 1.65671 1.13418 1.10689 1.20286 0.78707 0.87611 0.84723 1.90654 1.50668 1.15907 1.85105 1.21760 1.03488 0.98578 0.93975 1.21721 0.92626 0.88315 0.92239 0.91895 1.22299 1.02700 0.98587 0.95461 1.21636 0.98869 0.96265 0.97916 1.21247 0.96467 0.96257 0.96440 1.21786 1.01840 0.98310 0.97721 1.21809 0.95054 1.00986 1.01507 1.22548 1.00613 0.90534 0.86618 1.88023 1.59282 1.37542 1.42788 0.96748 0.89261 0.95592 0.92704 0.78141 0.88787 0.88367 0.90783 0.91008 0.91715 0.91865 0.92564 0.92465 0.92615 0.91661 0.92791 0.93153 0.93357 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 2 C 0.26 6.94 2.56 -69.08 -0.18 6.77 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -14.44 8.73 -34.44 -0.30 -14.74 16 5 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.45 11.32 55.43 0.63 -24.82 16 8 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.71 -15.36 5.07 -54.93 -0.28 -15.64 16 13 C 0.50 10.34 7.67 -10.99 -0.08 10.26 16 14 O -0.55 -13.55 15.08 -8.81 -0.13 -13.68 16 15 C -0.14 -2.01 5.41 -27.88 -0.15 -2.16 16 16 C 0.11 1.55 2.19 -26.68 -0.06 1.50 16 17 H 0.06 0.98 7.95 -51.93 -0.41 0.57 16 18 C -0.15 -1.59 5.05 -26.59 -0.13 -1.73 16 19 C -0.11 -1.05 4.81 -26.55 -0.13 -1.17 16 20 C -0.10 -1.04 0.78 -154.37 -0.12 -1.16 16 21 C -0.14 -1.15 8.49 37.16 0.32 -0.83 16 22 C -0.14 -1.33 8.08 37.16 0.30 -1.03 16 23 C 0.07 0.96 5.54 37.21 0.21 1.16 16 24 O -0.36 -5.83 9.06 -49.60 -0.45 -6.28 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 27 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.39 7.13 8.54 -40.82 -0.35 6.78 16 30 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 31 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.75 6.62 -51.93 -0.34 0.41 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.72 6.14 -51.93 -0.32 0.40 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 338.20 15.07 5.10 5.10 Total: -1.00 -31.99 338.20 -7.83 -39.82 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.59 Total: 4.38 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -0.08 Total: -4.85 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.35 Total: -40.46 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.58 Total: -19.96 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.99 -7.83 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878534517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.601 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds