Wall clock time and date at job start Mon Mar 30 2020 00:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46372 * 2 1 4 4 C 1.50700 * 109.47203 * 240.00318 * 2 1 3 5 5 H 1.07998 * 119.99964 * 239.99874 * 4 2 1 6 6 C 1.37875 * 119.99976 * 59.99851 * 4 2 1 7 7 N 1.31512 * 120.00421 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99987 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47042 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47211 * 119.99908 * 8 6 4 11 11 H 1.48500 * 109.46960 * 240.00182 * 8 6 4 12 12 N 1.46499 * 109.47051 * 119.99861 * 2 1 3 13 13 C 1.34775 * 120.00164 * 275.00141 * 12 2 1 14 14 O 1.21279 * 120.00080 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99997 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.47031 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.48038 * 54.98024 * 16 15 13 18 18 C 1.53095 * 109.47563 * 175.00024 * 16 15 13 19 19 C 1.53181 * 109.15940 * 177.60526 * 18 16 15 20 20 C 1.53176 * 109.03560 * 303.01673 * 19 18 16 21 21 C 1.52997 * 109.52567 * 176.88742 * 20 19 18 22 22 C 1.53006 * 109.52405 * 297.07642 * 20 19 18 23 23 C 1.53095 * 109.16286 * 56.98068 * 20 19 18 24 24 O 1.42895 * 109.48951 * 294.94612 * 16 15 13 25 25 H 1.08991 * 109.47697 * 299.99376 * 1 2 3 26 26 H 1.09001 * 109.47554 * 60.00329 * 1 2 3 27 27 H 1.09003 * 109.46672 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00769 * 179.97438 * 7 6 4 29 29 H 0.97002 * 119.99311 * 95.00260 * 12 2 1 30 30 H 1.09007 * 109.47159 * 59.99943 * 15 13 12 31 31 H 1.09002 * 109.46880 * 300.00089 * 15 13 12 32 32 H 1.08994 * 109.52897 * 57.70046 * 18 16 15 33 33 H 1.09002 * 109.52549 * 297.50206 * 18 16 15 34 34 H 1.08996 * 109.54405 * 183.15389 * 19 18 16 35 35 H 1.08999 * 109.61813 * 62.92653 * 19 18 16 36 36 H 1.09001 * 109.46900 * 60.00209 * 21 20 19 37 37 H 1.09001 * 109.47505 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.47038 * 299.99894 * 21 20 19 39 39 H 1.09002 * 109.46917 * 59.99913 * 22 20 19 40 40 H 1.09001 * 109.47550 * 179.97438 * 22 20 19 41 41 H 1.08998 * 109.46837 * 300.00271 * 22 20 19 42 42 H 1.08995 * 109.48092 * 62.37615 * 23 20 19 43 43 H 1.09004 * 109.48253 * 182.40879 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 3.1465 -2.2868 -3.6039 10 1 1.1661 -1.5865 -4.8161 11 1 3.1466 -0.1871 -4.8164 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8581 1.1584 2.4117 15 6 2.6499 -0.7285 3.5875 16 6 2.7006 0.2544 4.7588 17 1 1.7206 0.7128 4.8914 18 6 3.0914 -0.4935 6.0362 19 6 3.1984 0.5065 7.1916 20 6 4.2130 1.5923 6.8201 21 6 4.2717 2.6398 7.9337 22 6 5.5945 0.9604 6.6376 23 6 3.7789 2.2596 5.5124 24 8 3.6689 1.2697 4.4877 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7087 1.1614 -3.4844 29 1 2.2490 -1.6318 1.1525 30 1 3.6493 -1.1203 3.3979 31 1 1.9777 -1.5509 3.8325 32 1 4.0529 -0.9858 5.8904 33 1 2.3310 -1.2389 6.2691 34 1 3.5308 -0.0104 8.0917 35 1 2.2252 0.9632 7.3716 36 1 4.5755 2.1629 8.8655 37 1 4.9936 3.4123 7.6684 38 1 3.2876 3.0909 8.0604 39 1 5.5515 0.2165 5.8421 40 1 6.3157 1.7336 6.3729 41 1 5.9003 0.4807 7.5674 42 1 2.8131 2.7443 5.6548 43 1 4.5198 3.0040 5.2207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878534517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:38 Heat of formation + Delta-G solvation = -132.939849 kcal Electronic energy + Delta-G solvation = -21417.516911 eV Core-core repulsion = 18267.737048 eV Total energy + Delta-G solvation = -3149.779863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.15342 -40.09147 -36.78463 -36.12421 -34.34194 -34.03263 -31.43997 -29.87908 -28.15686 -27.34958 -26.90497 -25.31676 -23.16798 -22.24108 -21.02912 -19.79376 -18.82748 -17.45001 -17.36883 -17.17200 -16.55925 -16.03012 -15.91105 -15.76410 -15.13931 -15.00906 -14.59582 -14.27349 -14.10470 -13.63224 -13.49315 -13.12072 -13.01461 -12.96360 -12.83161 -12.80458 -12.72168 -12.62294 -12.40136 -12.26974 -12.10651 -11.90906 -11.73922 -11.32934 -11.09614 -11.07426 -10.67440 -10.51904 -10.16441 -9.67670 -8.17244 -6.35032 1.44121 1.44909 1.57454 1.94944 2.36973 2.69797 2.91925 3.12909 3.70270 3.82047 3.85549 3.89560 4.08832 4.20411 4.37792 4.42978 4.57747 4.65634 4.69383 4.73289 4.77886 4.83060 4.86104 4.91855 4.92633 4.97957 5.04848 5.07990 5.10833 5.16220 5.26648 5.32362 5.42064 5.45568 5.57144 5.63978 5.71841 5.94294 6.11749 6.43316 6.74217 7.05527 7.33626 7.67001 8.89419 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039429 B = 0.003591 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.972707 B = 7794.504580 C = 7828.969115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H -0.009 1.009 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.259 1.259 10 H -0.277 1.277 11 H -0.284 1.284 12 N -0.711 5.711 13 C 0.494 3.506 14 O -0.595 6.595 15 C -0.125 4.125 16 C 0.104 3.896 17 H 0.039 0.961 18 C -0.143 4.143 19 C -0.110 4.110 20 C -0.099 4.099 21 C -0.136 4.136 22 C -0.134 4.134 23 C 0.067 3.933 24 O -0.392 6.392 25 H 0.010 0.990 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.265 0.735 29 H 0.405 0.595 30 H 0.114 0.886 31 H 0.138 0.862 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.036 0.964 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.457 -5.047 20.988 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.009 0.991 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.189 4.189 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.182 1.182 10 H -0.203 1.203 11 H -0.210 1.210 12 N -0.360 5.360 13 C 0.282 3.718 14 O -0.477 6.477 15 C -0.164 4.164 16 C 0.046 3.954 17 H 0.057 0.943 18 C -0.180 4.180 19 C -0.147 4.147 20 C -0.099 4.099 21 C -0.194 4.194 22 C -0.191 4.191 23 C -0.010 4.010 24 O -0.312 6.312 25 H 0.029 0.971 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.240 0.760 30 H 0.132 0.868 31 H 0.156 0.844 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.278 -4.107 20.710 22.027 hybrid contribution -0.099 -0.063 -1.073 1.079 sum 6.179 -4.170 19.637 21.004 Atomic orbital electron populations 1.21877 0.98361 0.99446 0.99367 1.18289 0.91081 0.91713 0.82332 0.99063 1.21605 1.32427 1.13497 0.90863 0.90813 1.25854 0.94901 0.95621 1.02481 1.70071 1.37142 1.24076 1.24512 0.85257 0.78099 0.78499 0.78227 1.18232 1.20300 1.21037 1.46293 1.65737 1.14186 1.09823 1.21397 0.77311 0.87224 0.85877 1.90633 1.52608 1.18449 1.85970 1.21822 1.04994 0.98970 0.90647 1.21839 0.91373 0.88188 0.93973 0.94266 1.22231 1.03729 0.98674 0.93390 1.21673 0.98613 0.95988 0.98424 1.21199 0.96843 0.96797 0.95066 1.21767 1.01966 0.97960 0.97660 1.21785 0.94677 1.00631 1.01984 1.22694 1.00048 0.90391 0.87852 1.87963 1.59787 1.38667 1.44740 0.97115 0.91678 0.93906 0.92593 0.76024 0.86790 0.84419 0.89905 0.88796 0.89373 0.92162 0.90897 0.92357 0.92707 0.92935 0.93107 0.91212 0.94580 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.91 9.26 71.98 0.67 -6.24 16 2 C 0.27 14.57 2.56 44.25 0.11 14.68 16 3 H -0.01 -0.55 7.58 -2.39 -0.02 -0.57 16 4 C -0.55 -29.73 8.73 25.60 0.22 -29.51 16 5 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -54.18 11.32 21.45 0.24 -53.94 16 8 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 9 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 N -0.71 -30.51 5.07 -446.10 -2.26 -32.77 16 13 C 0.49 20.50 7.67 87.66 0.67 21.17 16 14 O -0.60 -30.92 15.08 10.71 0.16 -30.76 16 15 C -0.12 -3.41 5.41 29.85 0.16 -3.25 16 16 C 0.10 2.88 2.19 30.63 0.07 2.95 16 17 H 0.04 1.25 7.95 -2.39 -0.02 1.23 16 18 C -0.14 -2.57 5.05 30.69 0.16 -2.42 16 19 C -0.11 -1.82 4.81 30.71 0.15 -1.67 16 20 C -0.10 -1.83 0.78 -52.09 -0.04 -1.87 16 21 C -0.14 -2.00 8.49 71.98 0.61 -1.39 16 22 C -0.13 -2.34 8.08 71.98 0.58 -1.76 16 23 C 0.07 1.77 5.54 72.01 0.40 2.17 16 24 O -0.39 -12.98 9.06 -135.25 -1.23 -14.20 16 25 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.06 3.73 6.07 -2.39 -0.01 3.71 16 27 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.26 14.69 8.31 -92.71 -0.77 13.91 16 29 H 0.40 14.30 8.54 -92.71 -0.79 13.51 16 30 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 31 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.08 1.39 6.62 -2.39 -0.02 1.37 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.05 1.06 6.14 -2.39 -0.01 1.04 16 40 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -72.52 338.20 3.33 -69.19 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.18 Total: 23.75 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 4.21 Total: -6.09 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -2.02 Total: -86.70 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -1.06 Total: -44.96 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -72.52 3.33 -69.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878534517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.755 kcal (2) G-P(sol) polarization free energy of solvation -72.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds