Wall clock time and date at job start Mon Mar 30 2020 00:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.46929 * 2 1 4 4 C 1.50697 * 109.47253 * 240.00094 * 2 1 3 5 5 H 1.07992 * 120.00315 * 245.45981 * 4 2 1 6 6 C 1.37878 * 119.99854 * 65.45651 * 4 2 1 7 7 N 1.31516 * 120.00345 * 9.55929 * 6 4 2 8 8 Si 1.86805 * 120.00135 * 189.55953 * 6 4 2 9 9 H 1.48506 * 109.46962 * 84.99431 * 8 6 4 10 10 H 1.48495 * 109.47070 * 204.99669 * 8 6 4 11 11 H 1.48503 * 109.46781 * 324.99805 * 8 6 4 12 12 N 1.46499 * 109.47214 * 119.99863 * 2 1 3 13 13 C 1.34778 * 119.99864 * 275.00269 * 12 2 1 14 14 O 1.21278 * 120.00336 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99509 * 180.02562 * 13 12 2 16 16 C 1.53005 * 109.46977 * 179.97438 * 15 13 12 17 17 H 1.08993 * 109.47760 * 305.01987 * 16 15 13 18 18 C 1.53094 * 109.48071 * 184.99607 * 16 15 13 19 19 C 1.53180 * 109.16196 * 182.40828 * 18 16 15 20 20 C 1.53173 * 109.03347 * 56.98146 * 19 18 16 21 21 C 1.52998 * 109.52177 * 62.92887 * 20 19 18 22 22 C 1.53006 * 109.51746 * 183.04912 * 20 19 18 23 23 C 1.53089 * 109.16889 * 303.01593 * 20 19 18 24 24 O 1.42906 * 109.47949 * 65.05634 * 16 15 13 25 25 H 1.08997 * 109.46645 * 183.67906 * 1 2 3 26 26 H 1.09000 * 109.46901 * 303.67902 * 1 2 3 27 27 H 1.09000 * 109.46818 * 63.67682 * 1 2 3 28 28 H 0.96999 * 120.00668 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99930 * 94.99836 * 12 2 1 30 30 H 1.09005 * 109.47324 * 299.99524 * 15 13 12 31 31 H 1.08998 * 109.47555 * 59.99620 * 15 13 12 32 32 H 1.08995 * 109.52328 * 302.31454 * 18 16 15 33 33 H 1.09007 * 109.51951 * 62.44167 * 18 16 15 34 34 H 1.08996 * 109.53955 * 176.84887 * 19 18 16 35 35 H 1.08997 * 109.54296 * 297.02510 * 19 18 16 36 36 H 1.09002 * 109.47625 * 59.99756 * 21 20 19 37 37 H 1.09003 * 109.46740 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.47073 * 299.99199 * 21 20 19 39 39 H 1.09003 * 109.47221 * 60.00454 * 22 20 19 40 40 H 1.09004 * 109.47052 * 180.02562 * 22 20 19 41 41 H 1.09001 * 109.47157 * 299.99849 * 22 20 19 42 42 H 1.08989 * 109.48441 * 177.58963 * 23 20 19 43 43 H 1.08999 * 109.48260 * 297.62225 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5786 -1.6369 -1.1339 6 6 1.7946 -0.1773 -2.4796 7 7 1.2992 1.0356 -2.5935 8 14 2.1760 -1.1780 -4.0102 9 1 1.0240 -2.0610 -4.3241 10 1 2.4227 -0.2613 -5.1521 11 1 3.3845 -2.0072 -3.7710 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8591 1.1587 2.4115 15 6 2.6500 -0.7285 3.5874 16 6 2.7019 0.2548 4.7586 17 1 3.3029 1.1203 4.4800 18 6 3.3290 -0.4322 5.9745 19 6 3.3224 0.5386 7.1594 20 6 1.8838 0.9922 7.4256 21 6 1.0324 -0.2151 7.8236 22 6 1.8734 2.0208 8.5583 23 6 1.3125 1.6242 6.1537 24 8 1.3766 0.6791 5.0837 25 1 -0.3632 -1.0255 0.0659 26 1 -0.3633 0.5699 0.8552 27 1 -0.3633 0.4557 -0.9211 28 1 1.1322 1.4108 -3.4723 29 1 2.2491 -1.6317 1.1526 30 1 1.9778 -1.5508 3.8325 31 1 3.6493 -1.1203 3.3978 32 1 2.7516 -1.3211 6.2287 33 1 4.3549 -0.7183 5.7425 34 1 3.7163 0.0373 8.0435 35 1 3.9417 1.4043 6.9249 36 1 1.4431 -0.6678 8.7262 37 1 0.0090 0.1087 8.0133 38 1 1.0385 -0.9463 7.0153 39 1 2.4784 2.8815 8.2730 40 1 0.8493 2.3427 8.7474 41 1 2.2851 1.5706 9.4616 42 1 0.2747 1.9101 6.3243 43 1 1.8951 2.5079 5.8936 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878534518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:41 Heat of formation + Delta-G solvation = -113.739915 kcal Electronic energy + Delta-G solvation = -21417.929184 eV Core-core repulsion = 18268.981893 eV Total energy + Delta-G solvation = -3148.947291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.05771 -38.51005 -35.37911 -34.57202 -33.04687 -32.24341 -29.99481 -28.42700 -27.44049 -25.92391 -25.16430 -24.24423 -21.87379 -20.71117 -19.25183 -18.89880 -16.98678 -16.34106 -15.86468 -15.42231 -15.17295 -15.04048 -14.49868 -14.23712 -14.15562 -13.64001 -13.33560 -12.69675 -12.59192 -12.34016 -12.30416 -12.06375 -11.95432 -11.93470 -11.59264 -11.51983 -11.06605 -10.98150 -10.92123 -10.86898 -10.67799 -10.50808 -10.29007 -10.22388 -10.13756 -9.18453 -9.05165 -8.79218 -8.44959 -7.79619 -6.09876 -4.15103 3.27566 3.34000 3.35435 3.56898 3.96269 4.15618 4.41458 4.52837 4.62849 4.69428 4.93975 5.07145 5.18120 5.23517 5.34395 5.41469 5.45911 5.52828 5.55936 5.64226 5.70390 5.74968 5.78898 5.81796 5.84025 5.92427 5.96509 6.05160 6.15690 6.21155 6.35265 6.84216 6.99577 7.16982 7.47645 7.54044 7.65026 7.74514 7.93556 8.13672 8.79371 8.87010 9.28274 9.51700 10.98633 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.047522 B = 0.003555 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.062588 B = 7874.450670 C = 8088.842847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.263 3.737 3 H 0.054 0.946 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.715 5.715 13 C 0.502 3.498 14 O -0.545 6.545 15 C -0.138 4.138 16 C 0.109 3.891 17 H 0.064 0.936 18 C -0.153 4.153 19 C -0.109 4.109 20 C -0.104 4.104 21 C -0.136 4.136 22 C -0.139 4.139 23 C 0.074 3.926 24 O -0.359 6.359 25 H 0.027 0.973 26 H 0.020 0.980 27 H 0.070 0.930 28 H 0.264 0.736 29 H 0.386 0.614 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.062 -3.287 20.065 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.518 5.518 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.363 5.363 13 C 0.287 3.713 14 O -0.423 6.423 15 C -0.178 4.178 16 C 0.051 3.949 17 H 0.082 0.918 18 C -0.190 4.190 19 C -0.147 4.147 20 C -0.104 4.104 21 C -0.193 4.193 22 C -0.197 4.197 23 C -0.003 4.003 24 O -0.277 6.277 25 H 0.046 0.954 26 H 0.039 0.961 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.218 0.782 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.624 -2.349 19.828 20.139 hybrid contribution 0.502 -0.914 -0.763 1.293 sum 3.126 -3.263 19.065 19.593 Atomic orbital electron populations 1.22000 0.99000 0.98492 1.00422 1.18697 0.90493 0.94490 0.80201 0.92843 1.21195 1.37040 1.08604 0.90560 0.92145 1.24898 0.95048 0.94628 0.99018 1.69989 1.43946 1.13753 1.24130 0.86537 0.78689 0.79956 0.82344 1.20447 1.21206 1.19932 1.46497 1.65725 1.13420 1.10642 1.20288 0.78866 0.87662 0.84507 1.90657 1.50610 1.16099 1.84895 1.21758 1.03212 0.99310 0.93497 1.21729 0.84923 0.96184 0.92089 0.91826 1.22298 1.01520 0.99474 0.95752 1.21635 0.95700 0.99233 0.98128 1.21242 0.96071 0.96703 0.96379 1.21807 0.99014 0.97491 1.01022 1.21790 1.01892 0.98398 0.97584 1.22541 1.01304 0.91135 0.85320 1.88014 1.26421 1.61255 1.52003 0.95391 0.96086 0.91071 0.92611 0.78161 0.88870 0.88292 0.90824 0.90975 0.91716 0.91840 0.93158 0.92818 0.91677 0.92596 0.92481 0.92566 0.89316 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.36 37.16 0.35 -3.23 16 2 C 0.26 6.89 2.42 -69.08 -0.17 6.73 16 3 H 0.05 1.63 7.52 -51.93 -0.39 1.24 16 4 C -0.54 -14.50 8.66 -34.44 -0.30 -14.79 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.86 5.17 -17.82 -0.09 1.77 16 7 N -0.88 -25.55 12.16 55.43 0.67 -24.88 16 8 Si 0.90 20.90 29.55 -169.99 -5.02 15.88 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.71 -15.30 5.07 -54.93 -0.28 -15.58 16 13 C 0.50 10.32 7.67 -10.98 -0.08 10.23 16 14 O -0.54 -13.52 15.08 -8.78 -0.13 -13.66 16 15 C -0.14 -2.00 5.41 -27.88 -0.15 -2.15 16 16 C 0.11 1.55 2.19 -26.68 -0.06 1.49 16 17 H 0.06 1.00 7.95 -51.93 -0.41 0.59 16 18 C -0.15 -1.59 5.05 -26.59 -0.13 -1.73 16 19 C -0.11 -1.05 4.81 -26.55 -0.13 -1.17 16 20 C -0.10 -1.03 0.77 -154.37 -0.12 -1.15 16 21 C -0.14 -1.31 8.07 37.16 0.30 -1.01 16 22 C -0.14 -1.14 8.49 37.16 0.32 -0.83 16 23 C 0.07 0.95 5.54 37.20 0.21 1.16 16 24 O -0.36 -5.76 9.06 -49.57 -0.45 -6.21 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 1.94 6.83 -51.93 -0.35 1.58 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.39 7.08 8.53 -40.82 -0.35 6.73 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.07 0.74 6.62 -51.93 -0.34 0.40 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.70 6.14 -51.93 -0.32 0.38 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 339.51 15.07 5.12 5.12 Total: -1.00 -32.02 339.51 -7.78 -39.81 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.63 Total: 4.20 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -0.06 Total: -4.68 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.40 Total: -40.45 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.58 Total: -19.87 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.02 -7.78 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878534518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.931 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds