Wall clock time and date at job start Mon Mar 30 2020 00:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.46929 * 2 1 4 4 C 1.50697 * 109.47253 * 240.00094 * 2 1 3 5 5 H 1.07992 * 120.00315 * 245.45981 * 4 2 1 6 6 C 1.37878 * 119.99854 * 65.45651 * 4 2 1 7 7 N 1.31516 * 120.00345 * 9.55929 * 6 4 2 8 8 Si 1.86805 * 120.00135 * 189.55953 * 6 4 2 9 9 H 1.48506 * 109.46962 * 84.99431 * 8 6 4 10 10 H 1.48495 * 109.47070 * 204.99669 * 8 6 4 11 11 H 1.48503 * 109.46781 * 324.99805 * 8 6 4 12 12 N 1.46499 * 109.47214 * 119.99863 * 2 1 3 13 13 C 1.34778 * 119.99864 * 275.00269 * 12 2 1 14 14 O 1.21278 * 120.00336 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99509 * 180.02562 * 13 12 2 16 16 C 1.53005 * 109.46977 * 179.97438 * 15 13 12 17 17 H 1.08993 * 109.47760 * 305.01987 * 16 15 13 18 18 C 1.53094 * 109.48071 * 184.99607 * 16 15 13 19 19 C 1.53180 * 109.16196 * 182.40828 * 18 16 15 20 20 C 1.53173 * 109.03347 * 56.98146 * 19 18 16 21 21 C 1.52998 * 109.52177 * 62.92887 * 20 19 18 22 22 C 1.53006 * 109.51746 * 183.04912 * 20 19 18 23 23 C 1.53089 * 109.16889 * 303.01593 * 20 19 18 24 24 O 1.42906 * 109.47949 * 65.05634 * 16 15 13 25 25 H 1.08997 * 109.46645 * 183.67906 * 1 2 3 26 26 H 1.09000 * 109.46901 * 303.67902 * 1 2 3 27 27 H 1.09000 * 109.46818 * 63.67682 * 1 2 3 28 28 H 0.96999 * 120.00668 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99930 * 94.99836 * 12 2 1 30 30 H 1.09005 * 109.47324 * 299.99524 * 15 13 12 31 31 H 1.08998 * 109.47555 * 59.99620 * 15 13 12 32 32 H 1.08995 * 109.52328 * 302.31454 * 18 16 15 33 33 H 1.09007 * 109.51951 * 62.44167 * 18 16 15 34 34 H 1.08996 * 109.53955 * 176.84887 * 19 18 16 35 35 H 1.08997 * 109.54296 * 297.02510 * 19 18 16 36 36 H 1.09002 * 109.47625 * 59.99756 * 21 20 19 37 37 H 1.09003 * 109.46740 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.47073 * 299.99199 * 21 20 19 39 39 H 1.09003 * 109.47221 * 60.00454 * 22 20 19 40 40 H 1.09004 * 109.47052 * 180.02562 * 22 20 19 41 41 H 1.09001 * 109.47157 * 299.99849 * 22 20 19 42 42 H 1.08989 * 109.48441 * 177.58963 * 23 20 19 43 43 H 1.08999 * 109.48260 * 297.62225 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5786 -1.6369 -1.1339 6 6 1.7946 -0.1773 -2.4796 7 7 1.2992 1.0356 -2.5935 8 14 2.1760 -1.1780 -4.0102 9 1 1.0240 -2.0610 -4.3241 10 1 2.4227 -0.2613 -5.1521 11 1 3.3845 -2.0072 -3.7710 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8591 1.1587 2.4115 15 6 2.6500 -0.7285 3.5874 16 6 2.7019 0.2548 4.7586 17 1 3.3029 1.1203 4.4800 18 6 3.3290 -0.4322 5.9745 19 6 3.3224 0.5386 7.1594 20 6 1.8838 0.9922 7.4256 21 6 1.0324 -0.2151 7.8236 22 6 1.8734 2.0208 8.5583 23 6 1.3125 1.6242 6.1537 24 8 1.3766 0.6791 5.0837 25 1 -0.3632 -1.0255 0.0659 26 1 -0.3633 0.5699 0.8552 27 1 -0.3633 0.4557 -0.9211 28 1 1.1322 1.4108 -3.4723 29 1 2.2491 -1.6317 1.1526 30 1 1.9778 -1.5508 3.8325 31 1 3.6493 -1.1203 3.3978 32 1 2.7516 -1.3211 6.2287 33 1 4.3549 -0.7183 5.7425 34 1 3.7163 0.0373 8.0435 35 1 3.9417 1.4043 6.9249 36 1 1.4431 -0.6678 8.7262 37 1 0.0090 0.1087 8.0133 38 1 1.0385 -0.9463 7.0153 39 1 2.4784 2.8815 8.2730 40 1 0.8493 2.3427 8.7474 41 1 2.2851 1.5706 9.4616 42 1 0.2747 1.9101 6.3243 43 1 1.8951 2.5079 5.8936 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878534518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:40 Heat of formation + Delta-G solvation = -134.337194 kcal Electronic energy + Delta-G solvation = -21418.822350 eV Core-core repulsion = 18268.981893 eV Total energy + Delta-G solvation = -3149.840456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.14966 -40.08625 -36.76324 -36.11619 -34.33143 -34.03119 -31.49506 -29.91876 -28.14865 -27.30836 -26.90517 -25.32581 -23.18609 -22.24714 -21.03389 -19.79138 -18.81721 -17.48609 -17.29367 -17.18551 -16.56255 -16.06602 -15.91822 -15.63400 -15.21335 -15.00473 -14.56659 -14.34451 -13.94298 -13.79996 -13.49256 -13.18457 -13.00790 -12.94845 -12.83632 -12.77015 -12.70877 -12.62983 -12.39455 -12.34245 -12.12409 -11.90792 -11.73708 -11.32714 -11.15067 -11.08267 -10.60596 -10.52737 -10.16049 -9.68463 -8.19829 -6.33772 1.44560 1.46450 1.56006 1.95545 2.37381 2.69889 2.91727 3.12079 3.70471 3.82294 3.85622 3.89783 4.08949 4.20846 4.37737 4.43325 4.58231 4.66059 4.69077 4.71601 4.76647 4.83338 4.85547 4.90137 4.92098 4.98166 5.04864 5.05407 5.08159 5.16442 5.26693 5.32634 5.41886 5.44121 5.57372 5.63246 5.63923 5.93972 6.05331 6.42877 6.75862 7.05850 7.33772 7.67549 8.89585 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.047522 B = 0.003555 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.062588 B = 7874.450670 C = 8088.842847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.269 3.731 3 H -0.002 1.002 4 C -0.548 4.548 5 H 0.076 0.924 6 C 0.013 3.987 7 N -0.921 5.921 8 Si 0.972 3.028 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.261 1.261 12 N -0.711 5.711 13 C 0.494 3.506 14 O -0.595 6.595 15 C -0.125 4.125 16 C 0.104 3.896 17 H 0.037 0.963 18 C -0.143 4.143 19 C -0.110 4.110 20 C -0.099 4.099 21 C -0.133 4.133 22 C -0.136 4.136 23 C 0.067 3.933 24 O -0.390 6.390 25 H 0.047 0.953 26 H 0.011 0.989 27 H 0.047 0.953 28 H 0.265 0.735 29 H 0.405 0.595 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.239 -5.971 21.428 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.165 3.835 3 H 0.016 0.984 4 C -0.586 4.586 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.796 3.204 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.185 1.185 12 N -0.360 5.360 13 C 0.282 3.718 14 O -0.476 6.476 15 C -0.164 4.164 16 C 0.046 3.954 17 H 0.055 0.945 18 C -0.180 4.180 19 C -0.147 4.147 20 C -0.099 4.099 21 C -0.190 4.190 22 C -0.194 4.194 23 C -0.010 4.010 24 O -0.310 6.310 25 H 0.066 0.934 26 H 0.030 0.970 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.240 0.760 30 H 0.135 0.865 31 H 0.153 0.847 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.818 -5.077 21.222 22.152 hybrid contribution 0.112 0.004 -1.167 1.172 sum 3.930 -5.073 20.056 21.057 Atomic orbital electron populations 1.21821 0.98746 0.99178 0.98748 1.18291 0.90672 0.92211 0.82349 0.98397 1.21541 1.37111 1.09028 0.90919 0.90621 1.25862 0.94768 0.95496 1.02555 1.70149 1.45185 1.15643 1.24921 0.85365 0.79058 0.78241 0.77715 1.19534 1.21413 1.18500 1.46282 1.65766 1.14204 1.09767 1.21399 0.77506 0.87259 0.85653 1.90637 1.52563 1.18679 1.85769 1.21816 1.05309 0.99216 0.90060 1.21829 0.84230 0.95578 0.93736 0.94478 1.22229 1.02336 0.99442 0.94011 1.21672 0.95233 0.99153 0.98677 1.21194 0.96368 0.97177 0.95147 1.21781 0.98997 0.96919 1.01333 1.21771 1.02209 0.97950 0.97440 1.22688 1.01365 0.90622 0.86299 1.87955 1.27684 1.61935 1.53391 0.93371 0.96967 0.93391 0.92610 0.76000 0.86488 0.84684 0.89774 0.88943 0.89387 0.92291 0.91264 0.93035 0.92857 0.92784 0.92292 0.90924 0.89481 0.94707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.59 9.36 71.98 0.67 -5.91 16 2 C 0.27 14.44 2.42 44.25 0.11 14.55 16 3 H 0.00 -0.12 7.52 -2.38 -0.02 -0.14 16 4 C -0.55 -29.62 8.66 25.60 0.22 -29.40 16 5 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 6 C 0.01 0.73 5.17 84.65 0.44 1.17 16 7 N -0.92 -54.81 12.16 21.45 0.26 -54.55 16 8 Si 0.97 42.53 29.55 68.60 2.03 44.56 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 12 N -0.71 -30.33 5.07 -446.08 -2.26 -32.59 16 13 C 0.49 20.46 7.67 87.66 0.67 21.13 16 14 O -0.60 -30.95 15.08 10.69 0.16 -30.79 16 15 C -0.12 -3.39 5.41 29.85 0.16 -3.23 16 16 C 0.10 2.88 2.19 30.63 0.07 2.95 16 17 H 0.04 1.20 7.95 -2.39 -0.02 1.18 16 18 C -0.14 -2.58 5.05 30.69 0.16 -2.43 16 19 C -0.11 -1.83 4.81 30.71 0.15 -1.69 16 20 C -0.10 -1.81 0.77 -52.09 -0.04 -1.85 16 21 C -0.13 -2.27 8.07 71.98 0.58 -1.69 16 22 C -0.14 -1.99 8.49 71.98 0.61 -1.38 16 23 C 0.07 1.75 5.54 72.01 0.40 2.15 16 24 O -0.39 -12.69 9.06 -135.27 -1.23 -13.92 16 25 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 2.69 6.83 -2.39 -0.02 2.68 16 28 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 29 H 0.40 14.15 8.53 -92.71 -0.79 13.36 16 30 H 0.12 2.69 8.14 -2.38 -0.02 2.67 16 31 H 0.14 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.08 1.39 6.62 -2.39 -0.02 1.37 16 33 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 1.04 6.14 -2.39 -0.01 1.02 16 39 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 43 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -72.68 339.51 3.34 -69.34 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.18 Total: 23.58 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 4.20 Total: -5.63 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -2.00 Total: -87.14 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -1.06 Total: -44.70 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -72.68 3.34 -69.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878534518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.996 kcal (2) G-P(sol) polarization free energy of solvation -72.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds