Wall clock time and date at job start Mon Mar 30 2020 00:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47158 * 2 1 4 4 C 1.50701 * 109.47180 * 120.00432 * 2 1 3 5 5 H 1.07996 * 120.00176 * 120.00134 * 4 2 1 6 6 C 1.37879 * 119.99589 * 299.99699 * 4 2 1 7 7 N 1.31507 * 120.00337 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99504 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47504 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47001 * 120.00264 * 8 6 4 11 11 H 1.48496 * 109.47287 * 239.99991 * 8 6 4 12 12 N 1.46498 * 109.47048 * 240.00300 * 2 1 3 13 13 C 1.34775 * 120.00039 * 84.99876 * 12 2 1 14 14 O 1.21282 * 120.00196 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00007 * 179.97438 * 13 12 2 16 16 C 1.53002 * 109.47334 * 180.02562 * 15 13 12 17 17 H 1.09006 * 109.48242 * 305.02404 * 16 15 13 18 18 C 1.53089 * 109.48481 * 185.00094 * 16 15 13 19 19 C 1.53177 * 109.16584 * 182.40776 * 18 16 15 20 20 C 1.53179 * 109.10692 * 56.93603 * 19 18 16 21 21 C 1.52999 * 109.52406 * 62.97030 * 20 19 18 22 22 C 1.53002 * 109.51846 * 183.16031 * 20 19 18 23 23 C 1.53100 * 109.15719 * 303.14927 * 20 19 18 24 24 O 1.42902 * 109.48115 * 65.05523 * 16 15 13 25 25 H 1.09004 * 109.46954 * 299.99562 * 1 2 3 26 26 H 1.09000 * 109.47043 * 59.99688 * 1 2 3 27 27 H 1.09002 * 109.47158 * 179.97438 * 1 2 3 28 28 H 0.96998 * 120.00235 * 179.97438 * 7 6 4 29 29 H 0.97008 * 120.00231 * 264.99979 * 12 2 1 30 30 H 1.09001 * 109.47412 * 60.00096 * 15 13 12 31 31 H 1.08996 * 109.47340 * 300.00211 * 15 13 12 32 32 H 1.08999 * 109.52464 * 62.50338 * 18 16 15 33 33 H 1.08995 * 109.57222 * 302.34410 * 18 16 15 34 34 H 1.09002 * 109.54459 * 176.84823 * 19 18 16 35 35 H 1.08999 * 109.54390 * 297.02744 * 19 18 16 36 36 H 1.09006 * 109.47079 * 59.99923 * 21 20 19 37 37 H 1.08998 * 109.46952 * 179.97438 * 21 20 19 38 38 H 1.08993 * 109.46892 * 299.99948 * 21 20 19 39 39 H 1.08992 * 109.47446 * 60.00441 * 22 20 19 40 40 H 1.09005 * 109.46702 * 180.02562 * 22 20 19 41 41 H 1.09000 * 109.47086 * 299.99487 * 22 20 19 42 42 H 1.09002 * 109.41285 * 297.49784 * 23 20 19 43 43 H 1.08998 * 109.49112 * 177.50691 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3213 -1.1206 4.0078 9 1 3.1464 -2.2872 3.6036 10 1 3.1466 -0.1876 4.8164 11 1 1.1661 -1.5869 4.8159 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8581 1.1585 -2.4117 15 6 2.6498 -0.7284 -3.5875 16 6 2.7018 0.2549 -4.7586 17 1 1.7221 0.7141 -4.8914 18 6 3.0925 -0.4927 -6.0361 19 6 3.2011 0.5077 -7.1909 20 6 4.2154 1.5939 -6.8197 21 6 5.5970 0.9625 -6.6375 22 6 4.2733 2.6414 -7.9335 23 6 3.7822 2.2596 -5.5108 24 8 3.6708 1.2693 -4.4865 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7082 1.1607 3.4844 29 1 2.2490 -1.6318 -1.1527 30 1 1.9776 -1.5507 -3.8326 31 1 3.6491 -1.1202 -3.3979 32 1 2.3316 -1.2374 -6.2696 33 1 4.0531 -0.9867 -5.8907 34 1 3.5334 -0.0092 -8.0912 35 1 2.2277 0.9640 -7.3708 36 1 5.9029 0.4829 -7.5674 37 1 6.3181 1.7362 -6.3738 38 1 5.5545 0.2187 -5.8420 39 1 3.2890 3.0921 -8.0599 40 1 4.9956 3.4136 -7.6687 41 1 4.5770 2.1645 -8.8653 42 1 2.8168 2.7451 -5.6534 43 1 4.5235 3.0032 -5.2183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878534519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:43 Heat of formation + Delta-G solvation = -112.470329 kcal Electronic energy + Delta-G solvation = -21415.873323 eV Core-core repulsion = 18266.981086 eV Total energy + Delta-G solvation = -3148.892238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.05350 -38.51094 -35.37936 -34.58860 -33.04692 -32.25762 -29.96591 -28.35751 -27.43513 -25.91748 -25.20202 -24.23812 -21.86413 -20.69036 -19.24045 -18.89817 -16.99328 -16.32746 -15.87582 -15.43520 -15.14384 -15.04308 -14.51815 -14.27621 -14.10518 -13.67631 -13.28178 -12.73940 -12.62194 -12.36336 -12.27842 -12.05908 -11.95193 -11.85478 -11.58316 -11.47569 -11.08187 -10.97903 -10.90832 -10.86995 -10.65269 -10.49688 -10.24255 -10.19197 -10.13608 -9.17932 -8.97547 -8.82113 -8.49177 -7.77989 -6.07337 -4.16107 3.26625 3.34190 3.37144 3.56620 3.96581 4.15769 4.41418 4.53045 4.63048 4.69641 4.93968 5.07277 5.18166 5.24814 5.34283 5.41610 5.46333 5.52981 5.56058 5.63904 5.71220 5.74916 5.79084 5.81706 5.84187 5.92674 5.96832 6.05475 6.16009 6.21423 6.35591 6.88772 7.02856 7.22474 7.48379 7.57062 7.65559 7.76905 7.99505 8.21699 8.78542 8.86622 9.28140 9.52238 10.98743 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039416 B = 0.003591 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.202043 B = 7794.804784 C = 7829.502841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.715 5.715 13 C 0.502 3.498 14 O -0.545 6.545 15 C -0.138 4.138 16 C 0.109 3.891 17 H 0.063 0.937 18 C -0.153 4.153 19 C -0.109 4.109 20 C -0.104 4.104 21 C -0.136 4.136 22 C -0.139 4.139 23 C 0.074 3.926 24 O -0.358 6.358 25 H 0.089 0.911 26 H 0.013 0.987 27 H 0.025 0.975 28 H 0.263 0.737 29 H 0.387 0.613 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.398 -2.489 -19.541 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.363 5.363 13 C 0.287 3.713 14 O -0.423 6.423 15 C -0.178 4.178 16 C 0.051 3.949 17 H 0.081 0.919 18 C -0.190 4.190 19 C -0.147 4.147 20 C -0.104 4.104 21 C -0.194 4.194 22 C -0.196 4.196 23 C -0.003 4.003 24 O -0.276 6.276 25 H 0.107 0.893 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.219 0.781 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.207 -1.508 -19.231 19.980 hybrid contribution 0.243 -0.947 0.630 1.163 sum 5.450 -2.456 -18.601 19.538 Atomic orbital electron populations 1.22069 0.98660 0.98948 1.00785 1.18695 0.90867 0.94024 0.80192 0.93465 1.21283 1.32169 1.13102 0.90415 0.92083 1.24898 0.94884 0.94980 0.99058 1.69915 1.36044 1.22561 1.23661 0.86404 0.78569 0.79534 0.82639 1.19753 1.20899 1.20928 1.46511 1.65670 1.13416 1.10689 1.20286 0.78706 0.87611 0.84724 1.90655 1.50671 1.15905 1.85107 1.21758 1.03488 0.98577 0.93979 1.21722 0.92614 0.88330 0.92234 0.91890 1.22294 1.02700 0.98582 0.95465 1.21636 0.98870 0.96263 0.97919 1.21246 0.96465 0.96261 0.96435 1.21809 0.95056 1.00986 1.01510 1.21784 1.01836 0.98312 0.97712 1.22545 1.00615 0.90525 0.86626 1.88026 1.59251 1.37586 1.42765 0.89256 0.96755 0.95593 0.92704 0.78140 0.88361 0.88792 0.91010 0.90793 0.91714 0.91874 0.93163 0.92792 0.91657 0.92607 0.92465 0.92563 0.93373 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 2 C 0.26 6.94 2.56 -69.08 -0.18 6.77 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -14.44 8.73 -34.44 -0.30 -14.74 16 5 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.45 11.32 55.43 0.63 -24.82 16 8 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.71 -15.36 5.07 -54.93 -0.28 -15.64 16 13 C 0.50 10.34 7.67 -10.99 -0.08 10.26 16 14 O -0.55 -13.55 15.09 -8.78 -0.13 -13.68 16 15 C -0.14 -2.01 5.41 -27.88 -0.15 -2.16 16 16 C 0.11 1.55 2.19 -26.68 -0.06 1.50 16 17 H 0.06 0.98 7.95 -51.93 -0.41 0.57 16 18 C -0.15 -1.59 5.05 -26.59 -0.13 -1.73 16 19 C -0.11 -1.05 4.81 -26.55 -0.13 -1.17 16 20 C -0.10 -1.04 0.78 -154.36 -0.12 -1.16 16 21 C -0.14 -1.33 8.08 37.16 0.30 -1.03 16 22 C -0.14 -1.15 8.49 37.16 0.32 -0.83 16 23 C 0.07 0.96 5.54 37.21 0.21 1.17 16 24 O -0.36 -5.83 9.07 -49.57 -0.45 -6.28 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 29 H 0.39 7.13 8.54 -40.82 -0.35 6.78 16 30 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.75 6.64 -51.93 -0.34 0.41 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.72 6.15 -51.93 -0.32 0.40 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -31.99 338.23 -7.83 -39.82 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.59 Total: 4.37 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -0.08 Total: -4.85 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.35 Total: -40.45 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.58 Total: -19.96 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.99 -7.83 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878534519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.646 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds