Wall clock time and date at job start Mon Mar 30 2020 00:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47158 * 2 1 4 4 C 1.50701 * 109.47180 * 120.00432 * 2 1 3 5 5 H 1.07996 * 120.00176 * 120.00134 * 4 2 1 6 6 C 1.37879 * 119.99589 * 299.99699 * 4 2 1 7 7 N 1.31507 * 120.00337 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99504 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47504 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47001 * 120.00264 * 8 6 4 11 11 H 1.48496 * 109.47287 * 239.99991 * 8 6 4 12 12 N 1.46498 * 109.47048 * 240.00300 * 2 1 3 13 13 C 1.34775 * 120.00039 * 84.99876 * 12 2 1 14 14 O 1.21282 * 120.00196 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00007 * 179.97438 * 13 12 2 16 16 C 1.53002 * 109.47334 * 180.02562 * 15 13 12 17 17 H 1.09006 * 109.48242 * 305.02404 * 16 15 13 18 18 C 1.53089 * 109.48481 * 185.00094 * 16 15 13 19 19 C 1.53177 * 109.16584 * 182.40776 * 18 16 15 20 20 C 1.53179 * 109.10692 * 56.93603 * 19 18 16 21 21 C 1.52999 * 109.52406 * 62.97030 * 20 19 18 22 22 C 1.53002 * 109.51846 * 183.16031 * 20 19 18 23 23 C 1.53100 * 109.15719 * 303.14927 * 20 19 18 24 24 O 1.42902 * 109.48115 * 65.05523 * 16 15 13 25 25 H 1.09004 * 109.46954 * 299.99562 * 1 2 3 26 26 H 1.09000 * 109.47043 * 59.99688 * 1 2 3 27 27 H 1.09002 * 109.47158 * 179.97438 * 1 2 3 28 28 H 0.96998 * 120.00235 * 179.97438 * 7 6 4 29 29 H 0.97008 * 120.00231 * 264.99979 * 12 2 1 30 30 H 1.09001 * 109.47412 * 60.00096 * 15 13 12 31 31 H 1.08996 * 109.47340 * 300.00211 * 15 13 12 32 32 H 1.08999 * 109.52464 * 62.50338 * 18 16 15 33 33 H 1.08995 * 109.57222 * 302.34410 * 18 16 15 34 34 H 1.09002 * 109.54459 * 176.84823 * 19 18 16 35 35 H 1.08999 * 109.54390 * 297.02744 * 19 18 16 36 36 H 1.09006 * 109.47079 * 59.99923 * 21 20 19 37 37 H 1.08998 * 109.46952 * 179.97438 * 21 20 19 38 38 H 1.08993 * 109.46892 * 299.99948 * 21 20 19 39 39 H 1.08992 * 109.47446 * 60.00441 * 22 20 19 40 40 H 1.09005 * 109.46702 * 180.02562 * 22 20 19 41 41 H 1.09000 * 109.47086 * 299.99487 * 22 20 19 42 42 H 1.09002 * 109.41285 * 297.49784 * 23 20 19 43 43 H 1.08998 * 109.49112 * 177.50691 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3213 -1.1206 4.0078 9 1 3.1464 -2.2872 3.6036 10 1 3.1466 -0.1876 4.8164 11 1 1.1661 -1.5869 4.8159 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8581 1.1585 -2.4117 15 6 2.6498 -0.7284 -3.5875 16 6 2.7018 0.2549 -4.7586 17 1 1.7221 0.7141 -4.8914 18 6 3.0925 -0.4927 -6.0361 19 6 3.2011 0.5077 -7.1909 20 6 4.2154 1.5939 -6.8197 21 6 5.5970 0.9625 -6.6375 22 6 4.2733 2.6414 -7.9335 23 6 3.7822 2.2596 -5.5108 24 8 3.6708 1.2693 -4.4865 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7082 1.1607 3.4844 29 1 2.2490 -1.6318 -1.1527 30 1 1.9776 -1.5507 -3.8326 31 1 3.6491 -1.1202 -3.3979 32 1 2.3316 -1.2374 -6.2696 33 1 4.0531 -0.9867 -5.8907 34 1 3.5334 -0.0092 -8.0912 35 1 2.2277 0.9640 -7.3708 36 1 5.9029 0.4829 -7.5674 37 1 6.3181 1.7362 -6.3738 38 1 5.5545 0.2187 -5.8420 39 1 3.2890 3.0921 -8.0599 40 1 4.9956 3.4136 -7.6687 41 1 4.5770 2.1645 -8.8653 42 1 2.8168 2.7451 -5.6534 43 1 4.5235 3.0032 -5.2183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878534519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:42 Heat of formation + Delta-G solvation = -132.985227 kcal Electronic energy + Delta-G solvation = -21416.762916 eV Core-core repulsion = 18266.981086 eV Total energy + Delta-G solvation = -3149.781830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.15136 -40.09028 -36.78486 -36.12492 -34.34224 -34.03298 -31.44084 -29.87975 -28.15561 -27.34949 -26.90689 -25.31686 -23.16852 -22.24189 -21.02908 -19.79287 -18.82748 -17.44974 -17.36867 -17.17222 -16.55921 -16.03032 -15.90993 -15.76426 -15.14009 -15.00934 -14.59597 -14.27377 -14.10530 -13.63264 -13.49269 -13.12074 -13.01548 -12.96386 -12.83185 -12.80428 -12.72243 -12.62271 -12.40091 -12.27044 -12.10639 -11.90796 -11.73923 -11.33133 -11.09632 -11.07451 -10.67450 -10.51915 -10.16517 -9.67682 -8.17268 -6.35021 1.44122 1.44912 1.57459 1.94917 2.36970 2.69777 2.91862 3.12920 3.70219 3.82008 3.85454 3.89525 4.08795 4.20407 4.37808 4.42969 4.57708 4.65657 4.69337 4.73263 4.77859 4.82978 4.86125 4.91772 4.92643 4.97973 5.04844 5.08032 5.10828 5.16193 5.26624 5.32334 5.42065 5.45594 5.57075 5.63983 5.71830 5.94306 6.11736 6.43238 6.74223 7.05495 7.33620 7.66980 8.89412 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039416 B = 0.003591 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.202043 B = 7794.804784 C = 7829.502841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H -0.009 1.009 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.259 1.259 10 H -0.284 1.284 11 H -0.277 1.277 12 N -0.711 5.711 13 C 0.494 3.506 14 O -0.595 6.595 15 C -0.125 4.125 16 C 0.104 3.896 17 H 0.039 0.961 18 C -0.143 4.143 19 C -0.110 4.110 20 C -0.099 4.099 21 C -0.134 4.134 22 C -0.136 4.136 23 C 0.067 3.933 24 O -0.392 6.392 25 H 0.065 0.935 26 H 0.010 0.990 27 H 0.042 0.958 28 H 0.265 0.735 29 H 0.405 0.595 30 H 0.138 0.862 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.460 -5.042 -20.987 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.166 3.834 3 H 0.009 0.991 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.189 4.189 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.182 1.182 10 H -0.210 1.210 11 H -0.203 1.203 12 N -0.360 5.360 13 C 0.282 3.718 14 O -0.477 6.477 15 C -0.164 4.164 16 C 0.046 3.954 17 H 0.057 0.943 18 C -0.180 4.180 19 C -0.147 4.147 20 C -0.099 4.099 21 C -0.191 4.191 22 C -0.193 4.193 23 C -0.010 4.010 24 O -0.311 6.311 25 H 0.083 0.917 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.240 0.760 30 H 0.156 0.844 31 H 0.132 0.868 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.281 -4.101 -20.709 22.026 hybrid contribution -0.099 -0.065 1.072 1.079 sum 6.183 -4.167 -19.637 21.004 Atomic orbital electron populations 1.21878 0.98361 0.99442 0.99367 1.18288 0.91082 0.91712 0.82330 0.99063 1.21606 1.32436 1.13494 0.90863 0.90813 1.25854 0.94905 0.95617 1.02481 1.70070 1.37134 1.24081 1.24509 0.85258 0.78100 0.78498 0.78226 1.18232 1.21039 1.20300 1.46295 1.65735 1.14184 1.09824 1.21398 0.77311 0.87224 0.85878 1.90634 1.52611 1.18448 1.85972 1.21820 1.04993 0.98968 0.90652 1.21839 0.91361 0.88202 0.93968 0.94263 1.22226 1.03732 0.98669 0.93395 1.21673 0.98614 0.95986 0.98426 1.21199 0.96841 0.96803 0.95058 1.21785 0.94681 1.00633 1.01986 1.21765 1.01963 0.97963 0.97650 1.22691 1.00049 0.90380 0.87864 1.87965 1.59756 1.38711 1.44718 0.91672 0.97123 0.93904 0.92593 0.76023 0.84412 0.86798 0.88798 0.89913 0.89372 0.92173 0.91223 0.93102 0.92935 0.92698 0.92354 0.90897 0.94599 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.91 9.26 71.98 0.67 -6.24 16 2 C 0.27 14.57 2.56 44.24 0.11 14.68 16 3 H -0.01 -0.55 7.58 -2.39 -0.02 -0.57 16 4 C -0.55 -29.73 8.73 25.60 0.22 -29.51 16 5 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -54.17 11.32 21.45 0.24 -53.93 16 8 Si 0.97 42.79 29.54 68.60 2.03 44.81 16 9 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 12 N -0.71 -30.51 5.07 -446.11 -2.26 -32.77 16 13 C 0.49 20.50 7.67 87.66 0.67 21.17 16 14 O -0.60 -30.92 15.09 10.68 0.16 -30.76 16 15 C -0.12 -3.41 5.41 29.85 0.16 -3.25 16 16 C 0.10 2.88 2.19 30.62 0.07 2.95 16 17 H 0.04 1.25 7.95 -2.38 -0.02 1.23 16 18 C -0.14 -2.58 5.05 30.68 0.16 -2.42 16 19 C -0.11 -1.82 4.81 30.71 0.15 -1.67 16 20 C -0.10 -1.83 0.78 -52.09 -0.04 -1.87 16 21 C -0.13 -2.35 8.08 71.98 0.58 -1.76 16 22 C -0.14 -2.00 8.49 71.98 0.61 -1.39 16 23 C 0.07 1.77 5.54 72.02 0.40 2.17 16 24 O -0.39 -12.98 9.07 -135.27 -1.23 -14.20 16 25 H 0.06 3.73 6.07 -2.39 -0.01 3.72 16 26 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.40 14.31 8.54 -92.70 -0.79 13.51 16 30 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.39 6.64 -2.39 -0.02 1.37 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.05 1.06 6.15 -2.39 -0.01 1.04 16 39 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -72.52 338.23 3.33 -69.19 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.18 Total: 23.75 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 4.21 Total: -6.08 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -2.02 Total: -86.70 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -1.07 Total: -44.96 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -72.52 3.33 -69.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878534519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.800 kcal (2) G-P(sol) polarization free energy of solvation -72.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds