Wall clock time and date at job start Mon Mar 30 2020 00:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.46746 * 239.99818 * 2 1 3 13 13 C 1.34774 * 120.00106 * 85.00589 * 12 2 1 14 14 O 1.21279 * 119.99828 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99877 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47043 * 180.02562 * 15 13 12 17 17 H 1.08999 * 109.48354 * 54.99727 * 16 15 13 18 18 C 1.53090 * 109.48057 * 175.02343 * 16 15 13 19 19 C 1.53181 * 109.15969 * 177.57779 * 18 16 15 20 20 C 1.53180 * 109.04688 * 303.03098 * 19 18 16 21 21 C 1.53001 * 109.52436 * 297.07403 * 20 19 18 22 22 C 1.52999 * 109.52196 * 176.88365 * 20 19 18 23 23 C 1.53094 * 109.15911 * 56.98113 * 20 19 18 24 24 O 1.42908 * 109.47669 * 294.97676 * 16 15 13 25 25 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 26 26 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 27 27 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00040 * 264.99233 * 12 2 1 30 30 H 1.09001 * 109.47014 * 299.99690 * 15 13 12 31 31 H 1.08991 * 109.47236 * 59.99680 * 15 13 12 32 32 H 1.09002 * 109.51997 * 297.49125 * 18 16 15 33 33 H 1.08997 * 109.52602 * 57.68465 * 18 16 15 34 34 H 1.09004 * 109.54231 * 183.16501 * 19 18 16 35 35 H 1.09001 * 109.60943 * 62.94736 * 19 18 16 36 36 H 1.09000 * 109.46903 * 179.68484 * 21 20 19 37 37 H 1.09004 * 109.46979 * 299.68225 * 21 20 19 38 38 H 1.08995 * 109.47242 * 59.68311 * 21 20 19 39 39 H 1.09004 * 109.47153 * 300.31645 * 22 20 19 40 40 H 1.08993 * 109.47300 * 60.31491 * 22 20 19 41 41 H 1.09000 * 109.47219 * 180.31892 * 22 20 19 42 42 H 1.08999 * 109.47871 * 182.41197 * 23 20 19 43 43 H 1.08996 * 109.48478 * 62.37131 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.3426 -2.1615 4.4119 10 1 3.6292 -1.7582 3.7123 11 1 2.4864 -0.1412 5.1123 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8583 1.1583 -2.4117 15 6 2.6498 -0.7287 -3.5874 16 6 2.7019 0.2545 -4.7585 17 1 3.3033 1.1199 -4.4802 18 6 3.3284 -0.4328 -5.9746 19 6 3.3216 0.5380 -7.1596 20 6 1.8831 0.9924 -7.4254 21 6 1.0309 -0.2145 -7.8229 22 6 1.8730 2.0221 -8.5569 23 6 1.3127 1.6247 -6.1531 24 8 1.3767 0.6795 -5.0831 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3635 -1.0276 0.0005 28 1 0.7088 1.1615 3.4843 29 1 2.2490 -1.6318 -1.1526 30 1 3.6492 -1.1206 -3.3978 31 1 1.9777 -1.5509 -3.8324 32 1 4.3546 -0.7182 -5.7432 33 1 2.7506 -1.3214 -6.2287 34 1 3.7149 0.0366 -8.0440 35 1 3.9405 1.4044 -6.9262 36 1 0.0063 0.1089 -8.0064 37 1 1.4378 -0.6640 -8.7288 38 1 1.0415 -0.9482 -7.0169 39 1 2.4829 2.8798 -8.2731 40 1 2.2793 1.5711 -9.4622 41 1 0.8497 2.3490 -8.7416 42 1 0.2750 1.9112 -6.3234 43 1 1.8960 2.5080 -5.8932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878534520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:44 Heat of formation + Delta-G solvation = -112.474136 kcal Electronic energy + Delta-G solvation = -21423.954390 eV Core-core repulsion = 18275.061987 eV Total energy + Delta-G solvation = -3148.892403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.05795 -38.51080 -35.38062 -34.58683 -33.04815 -32.25921 -29.96329 -28.34899 -27.44329 -25.91751 -25.19428 -24.23976 -21.86342 -20.68464 -19.24274 -18.89805 -16.98948 -16.34292 -15.86887 -15.43135 -15.16694 -15.04051 -14.51541 -14.23924 -14.15846 -13.63657 -13.33408 -12.70105 -12.60399 -12.35010 -12.29812 -12.06283 -11.94380 -11.90504 -11.58830 -11.43837 -11.09295 -10.99063 -10.91560 -10.85893 -10.61137 -10.50630 -10.26266 -10.18057 -10.13838 -9.18456 -8.97364 -8.82009 -8.49139 -7.77756 -6.07463 -4.16542 3.26766 3.33324 3.35607 3.56799 3.96267 4.15403 4.41073 4.52812 4.62714 4.69391 4.93913 5.07094 5.17976 5.24398 5.34229 5.41385 5.45981 5.52691 5.55916 5.64108 5.70398 5.74807 5.78917 5.81607 5.83970 5.92337 5.96565 6.05072 6.15618 6.21073 6.35260 6.91472 7.07419 7.24487 7.47899 7.57490 7.65793 7.77193 7.99898 8.22324 8.78296 8.86313 9.28117 9.51829 10.98477 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.047390 B = 0.003559 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.698738 B = 7865.149951 C = 8107.667862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.715 5.715 13 C 0.502 3.498 14 O -0.545 6.545 15 C -0.138 4.138 16 C 0.109 3.891 17 H 0.064 0.936 18 C -0.153 4.153 19 C -0.109 4.109 20 C -0.104 4.104 21 C -0.136 4.136 22 C -0.139 4.139 23 C 0.074 3.926 24 O -0.359 6.359 25 H 0.088 0.912 26 H 0.015 0.985 27 H 0.025 0.975 28 H 0.264 0.736 29 H 0.387 0.613 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.747 -2.900 -19.963 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.363 5.363 13 C 0.287 3.713 14 O -0.423 6.423 15 C -0.178 4.178 16 C 0.051 3.949 17 H 0.082 0.918 18 C -0.190 4.190 19 C -0.147 4.147 20 C -0.104 4.104 21 C -0.193 4.193 22 C -0.197 4.197 23 C -0.003 4.003 24 O -0.277 6.277 25 H 0.107 0.893 26 H 0.034 0.966 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.219 0.781 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.283 -1.982 -19.721 20.091 hybrid contribution 0.626 -0.867 0.728 1.293 sum 3.908 -2.848 -18.993 19.599 Atomic orbital electron populations 1.22064 0.98599 0.98988 1.00834 1.18683 0.90968 0.93902 0.80128 0.93543 1.21248 1.32303 1.13116 0.90446 0.92149 1.24900 0.94895 0.94966 0.99042 1.69917 1.35993 1.22452 1.23768 0.86457 0.79136 0.79267 0.82278 1.20580 1.19886 1.21105 1.46513 1.65694 1.13429 1.10660 1.20286 0.78875 0.87661 0.84511 1.90655 1.50637 1.16143 1.84900 1.21757 1.03201 0.99322 0.93504 1.21727 0.84935 0.96163 0.92093 0.91848 1.22297 1.01512 0.99482 0.95747 1.21639 0.95705 0.99221 0.98132 1.21245 0.96075 0.96699 0.96384 1.21806 0.99018 0.97493 1.01015 1.21786 1.01897 0.98383 0.97595 1.22547 1.01309 0.91129 0.85323 1.88019 1.26416 1.61243 1.52000 0.89333 0.96565 0.95621 0.92645 0.78144 0.88307 0.88858 0.90976 0.90807 0.91716 0.91848 0.92809 0.93155 0.91678 0.92602 0.92564 0.92475 0.89311 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.26 37.16 0.34 -3.45 16 2 C 0.27 6.97 2.56 -69.08 -0.18 6.80 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.43 8.73 -34.44 -0.30 -14.73 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.42 11.32 55.43 0.63 -24.80 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.71 -15.36 5.07 -54.94 -0.28 -15.64 16 13 C 0.50 10.34 7.67 -10.99 -0.08 10.25 16 14 O -0.55 -13.54 15.08 -8.84 -0.13 -13.68 16 15 C -0.14 -2.00 5.41 -27.88 -0.15 -2.15 16 16 C 0.11 1.55 2.19 -26.69 -0.06 1.49 16 17 H 0.06 1.00 7.96 -51.93 -0.41 0.58 16 18 C -0.15 -1.59 5.06 -26.59 -0.13 -1.73 16 19 C -0.11 -1.05 4.81 -26.54 -0.13 -1.17 16 20 C -0.10 -1.03 0.78 -154.37 -0.12 -1.15 16 21 C -0.14 -1.31 8.08 37.16 0.30 -1.01 16 22 C -0.14 -1.14 8.49 37.16 0.32 -0.83 16 23 C 0.07 0.95 5.54 37.21 0.21 1.16 16 24 O -0.36 -5.78 9.07 -49.63 -0.45 -6.23 16 25 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.39 7.13 8.54 -40.82 -0.35 6.78 16 30 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.74 6.62 -51.93 -0.34 0.40 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.70 6.13 -51.93 -0.32 0.39 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 338.20 15.07 5.10 5.10 Total: -1.00 -31.91 338.20 -7.83 -39.74 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.59 Total: 4.46 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -0.08 Total: -4.85 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.35 Total: -40.44 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.58 Total: -19.90 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.91 -7.83 -39.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878534520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.732 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds