Wall clock time and date at job start Mon Mar 30 2020 00:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.46746 * 239.99818 * 2 1 3 13 13 C 1.34774 * 120.00106 * 85.00589 * 12 2 1 14 14 O 1.21279 * 119.99828 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99877 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47043 * 180.02562 * 15 13 12 17 17 H 1.08999 * 109.48354 * 54.99727 * 16 15 13 18 18 C 1.53090 * 109.48057 * 175.02343 * 16 15 13 19 19 C 1.53181 * 109.15969 * 177.57779 * 18 16 15 20 20 C 1.53180 * 109.04688 * 303.03098 * 19 18 16 21 21 C 1.53001 * 109.52436 * 297.07403 * 20 19 18 22 22 C 1.52999 * 109.52196 * 176.88365 * 20 19 18 23 23 C 1.53094 * 109.15911 * 56.98113 * 20 19 18 24 24 O 1.42908 * 109.47669 * 294.97676 * 16 15 13 25 25 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 26 26 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 27 27 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00040 * 264.99233 * 12 2 1 30 30 H 1.09001 * 109.47014 * 299.99690 * 15 13 12 31 31 H 1.08991 * 109.47236 * 59.99680 * 15 13 12 32 32 H 1.09002 * 109.51997 * 297.49125 * 18 16 15 33 33 H 1.08997 * 109.52602 * 57.68465 * 18 16 15 34 34 H 1.09004 * 109.54231 * 183.16501 * 19 18 16 35 35 H 1.09001 * 109.60943 * 62.94736 * 19 18 16 36 36 H 1.09000 * 109.46903 * 179.68484 * 21 20 19 37 37 H 1.09004 * 109.46979 * 299.68225 * 21 20 19 38 38 H 1.08995 * 109.47242 * 59.68311 * 21 20 19 39 39 H 1.09004 * 109.47153 * 300.31645 * 22 20 19 40 40 H 1.08993 * 109.47300 * 60.31491 * 22 20 19 41 41 H 1.09000 * 109.47219 * 180.31892 * 22 20 19 42 42 H 1.08999 * 109.47871 * 182.41197 * 23 20 19 43 43 H 1.08996 * 109.48478 * 62.37131 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.3426 -2.1615 4.4119 10 1 3.6292 -1.7582 3.7123 11 1 2.4864 -0.1412 5.1123 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8583 1.1583 -2.4117 15 6 2.6498 -0.7287 -3.5874 16 6 2.7019 0.2545 -4.7585 17 1 3.3033 1.1199 -4.4802 18 6 3.3284 -0.4328 -5.9746 19 6 3.3216 0.5380 -7.1596 20 6 1.8831 0.9924 -7.4254 21 6 1.0309 -0.2145 -7.8229 22 6 1.8730 2.0221 -8.5569 23 6 1.3127 1.6247 -6.1531 24 8 1.3767 0.6795 -5.0831 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3635 -1.0276 0.0005 28 1 0.7088 1.1615 3.4843 29 1 2.2490 -1.6318 -1.1526 30 1 3.6492 -1.1206 -3.3978 31 1 1.9777 -1.5509 -3.8324 32 1 4.3546 -0.7182 -5.7432 33 1 2.7506 -1.3214 -6.2287 34 1 3.7149 0.0366 -8.0440 35 1 3.9405 1.4044 -6.9262 36 1 0.0063 0.1089 -8.0064 37 1 1.4378 -0.6640 -8.7288 38 1 1.0415 -0.9482 -7.0169 39 1 2.4829 2.8798 -8.2731 40 1 2.2793 1.5711 -9.4622 41 1 0.8497 2.3490 -8.7416 42 1 0.2750 1.9112 -6.3234 43 1 1.8960 2.5080 -5.8932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878534520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:44 Heat of formation + Delta-G solvation = -132.873917 kcal Electronic energy + Delta-G solvation = -21424.838991 eV Core-core repulsion = 18275.061987 eV Total energy + Delta-G solvation = -3149.777004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.15214 -40.09078 -36.78454 -36.12220 -34.34137 -34.03215 -31.44100 -29.88022 -28.15396 -27.34716 -26.90283 -25.31993 -23.16861 -22.23956 -21.03238 -19.79169 -18.82180 -17.49555 -17.30228 -17.18729 -16.56654 -16.09005 -15.91874 -15.62789 -15.21513 -15.00557 -14.58041 -14.35797 -13.94023 -13.72436 -13.49353 -13.08855 -13.02294 -13.00298 -12.82794 -12.79005 -12.70426 -12.60894 -12.39579 -12.27907 -12.13017 -11.91010 -11.73875 -11.32816 -11.09455 -11.08437 -10.66627 -10.52133 -10.16140 -9.67906 -8.16916 -6.34955 1.44860 1.46038 1.56731 1.95018 2.36979 2.69890 2.91681 3.13118 3.70341 3.82093 3.85529 3.89552 4.08824 4.20572 4.37497 4.43119 4.57993 4.65821 4.69281 4.72719 4.77542 4.83203 4.86323 4.91922 4.93049 4.98089 5.04981 5.07937 5.11191 5.16324 5.26540 5.32477 5.41988 5.45060 5.57280 5.63679 5.71280 5.93789 6.11238 6.42876 6.74112 7.05488 7.33700 7.66962 8.89611 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.047390 B = 0.003559 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.698738 B = 7865.149951 C = 8107.667862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.271 3.729 3 H -0.006 1.006 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.975 3.025 9 H -0.271 1.271 10 H -0.262 1.262 11 H -0.287 1.287 12 N -0.711 5.711 13 C 0.494 3.506 14 O -0.595 6.595 15 C -0.125 4.125 16 C 0.104 3.896 17 H 0.038 0.962 18 C -0.143 4.143 19 C -0.110 4.110 20 C -0.099 4.099 21 C -0.133 4.133 22 C -0.136 4.136 23 C 0.067 3.933 24 O -0.391 6.391 25 H 0.065 0.935 26 H 0.007 0.993 27 H 0.039 0.961 28 H 0.265 0.735 29 H 0.405 0.595 30 H 0.136 0.864 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.148 -5.397 -21.291 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.012 0.988 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.189 4.189 7 N -0.558 5.558 8 Si 0.800 3.200 9 H -0.196 1.196 10 H -0.186 1.186 11 H -0.213 1.213 12 N -0.360 5.360 13 C 0.282 3.718 14 O -0.477 6.477 15 C -0.164 4.164 16 C 0.046 3.954 17 H 0.056 0.944 18 C -0.180 4.180 19 C -0.147 4.147 20 C -0.099 4.099 21 C -0.190 4.190 22 C -0.194 4.194 23 C -0.010 4.010 24 O -0.310 6.310 25 H 0.084 0.916 26 H 0.026 0.974 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.240 0.760 30 H 0.154 0.846 31 H 0.134 0.866 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.701 -4.519 -21.083 22.068 hybrid contribution 0.153 -0.008 1.126 1.137 sum 4.853 -4.527 -19.956 21.031 Atomic orbital electron populations 1.21885 0.98691 0.99269 0.99236 1.18274 0.90872 0.91813 0.82336 0.98816 1.21577 1.32557 1.13542 0.90799 0.90679 1.25867 0.94901 0.95590 1.02509 1.70076 1.37141 1.24032 1.24575 0.85295 0.79033 0.77966 0.77729 1.19617 1.18601 1.21277 1.46294 1.65746 1.14205 1.09802 1.21399 0.77511 0.87265 0.85640 1.90634 1.52563 1.18697 1.85762 1.21815 1.05313 0.99211 0.90072 1.21831 0.84231 0.95579 0.93726 0.94410 1.22229 1.02341 0.99436 0.94008 1.21676 0.95220 0.99157 0.98676 1.21197 0.96387 0.97160 0.95150 1.21781 0.98988 0.96933 1.01335 1.21768 1.02201 0.97943 0.97452 1.22695 1.01358 0.90629 0.86301 1.87960 1.27717 1.61936 1.53398 0.91633 0.97396 0.94163 0.92594 0.76015 0.84629 0.86574 0.88904 0.89806 0.89387 0.92251 0.93061 0.91252 0.92876 0.92756 0.90921 0.92311 0.89517 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.06 9.26 71.98 0.67 -6.40 16 2 C 0.27 14.64 2.56 44.24 0.11 14.75 16 3 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 4 C -0.55 -29.61 8.73 25.60 0.22 -29.38 16 5 H 0.08 3.76 7.74 -2.91 -0.02 3.73 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -54.15 11.32 21.45 0.24 -53.91 16 8 Si 0.98 42.52 29.54 68.60 2.03 44.55 16 9 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 10 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 11 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 12 N -0.71 -30.51 5.07 -446.11 -2.26 -32.77 16 13 C 0.49 20.50 7.67 87.66 0.67 21.17 16 14 O -0.60 -30.92 15.08 10.74 0.16 -30.76 16 15 C -0.12 -3.40 5.41 29.85 0.16 -3.24 16 16 C 0.10 2.88 2.19 30.62 0.07 2.95 16 17 H 0.04 1.21 7.96 -2.39 -0.02 1.20 16 18 C -0.14 -2.58 5.06 30.68 0.16 -2.43 16 19 C -0.11 -1.83 4.81 30.72 0.15 -1.68 16 20 C -0.10 -1.81 0.78 -52.09 -0.04 -1.85 16 21 C -0.13 -2.29 8.08 71.98 0.58 -1.71 16 22 C -0.14 -1.99 8.49 71.98 0.61 -1.38 16 23 C 0.07 1.75 5.54 72.01 0.40 2.15 16 24 O -0.39 -12.75 9.07 -135.21 -1.23 -13.98 16 25 H 0.06 3.80 6.07 -2.39 -0.01 3.79 16 26 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 27 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 29 H 0.40 14.29 8.54 -92.71 -0.79 13.50 16 30 H 0.14 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.39 6.62 -2.39 -0.02 1.38 16 34 H 0.09 1.10 8.14 -2.38 -0.02 1.09 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.05 1.04 6.13 -2.39 -0.01 1.03 16 39 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -72.18 338.20 3.33 -68.85 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.18 Total: 24.01 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 4.21 Total: -5.99 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -2.02 Total: -86.68 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.06 Total: -44.74 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -72.18 3.33 -68.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878534520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.025 kcal (2) G-P(sol) polarization free energy of solvation -72.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds