Wall clock time and date at job start Mon Mar 30 2020 00:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47132 * 2 1 4 4 C 1.50696 * 109.46942 * 240.00186 * 2 1 3 5 5 H 1.08009 * 120.00052 * 335.25772 * 4 2 1 6 6 C 1.37871 * 120.00172 * 155.25598 * 4 2 1 7 7 N 1.31513 * 119.99897 * 355.43576 * 6 4 2 8 8 Si 1.86798 * 120.00293 * 175.15347 * 6 4 2 9 9 H 1.48500 * 109.46862 * 60.00381 * 8 6 4 10 10 H 1.48503 * 109.47450 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47560 * 300.00612 * 8 6 4 12 12 N 1.46500 * 109.46984 * 119.99964 * 2 1 3 13 13 C 1.34770 * 120.00452 * 274.99819 * 12 2 1 14 14 O 1.21281 * 119.99675 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00140 * 180.02562 * 13 12 2 16 16 C 1.53000 * 109.47254 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47456 * 179.97438 * 16 15 13 18 18 H 1.09003 * 110.55169 * 305.70233 * 17 16 15 19 19 C 1.55001 * 110.62032 * 182.82003 * 17 16 15 20 20 C 1.54983 * 102.00990 * 204.59751 * 19 17 16 21 21 C 1.53005 * 110.33846 * 262.02460 * 20 19 17 22 22 C 1.53004 * 110.68194 * 139.48083 * 20 19 17 23 23 C 1.54093 * 104.25756 * 20.66758 * 20 19 17 24 24 O 1.43748 * 107.29422 * 2.16270 * 23 20 19 25 25 H 1.09005 * 109.46794 * 295.03079 * 1 2 3 26 26 H 1.09004 * 109.47332 * 55.02546 * 1 2 3 27 27 H 1.08996 * 109.47490 * 175.03422 * 1 2 3 28 28 H 0.97000 * 119.99990 * 4.84718 * 7 6 4 29 29 H 0.97006 * 119.99340 * 94.99718 * 12 2 1 30 30 H 1.09007 * 109.47000 * 299.99768 * 15 13 12 31 31 H 1.08996 * 109.47499 * 59.99751 * 15 13 12 32 32 H 1.08998 * 109.47332 * 300.00103 * 16 15 13 33 33 H 1.09008 * 109.47232 * 59.99829 * 16 15 13 34 34 H 1.09003 * 110.90502 * 322.67825 * 19 17 16 35 35 H 1.08998 * 110.90446 * 86.27650 * 19 17 16 36 36 H 1.09003 * 109.46886 * 176.21732 * 21 20 19 37 37 H 1.08994 * 109.47347 * 296.21624 * 21 20 19 38 38 H 1.08997 * 109.47086 * 56.21702 * 21 20 19 39 39 H 1.08995 * 109.46819 * 303.58042 * 22 20 19 40 40 H 1.09001 * 109.47305 * 63.58229 * 22 20 19 41 41 H 1.09003 * 109.46665 * 183.58382 * 22 20 19 42 42 H 1.08997 * 109.88107 * 242.74543 * 23 20 19 43 43 H 1.08999 * 110.00795 * 121.65994 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 1.4114 -1.4455 -1.7209 6 6 3.2845 -0.4218 -1.7302 7 7 4.0043 0.5359 -1.1879 8 14 3.9618 -1.3964 -3.1727 9 1 3.0627 -1.2368 -4.3437 10 1 5.3167 -0.8950 -3.5163 11 1 4.0448 -2.8327 -2.8044 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0184 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6500 -0.7287 3.5874 16 6 2.7008 0.2542 4.7588 17 6 3.2107 -0.4671 6.0081 18 1 2.6090 -1.3531 6.2108 19 6 3.2059 0.4871 7.2295 20 6 4.2866 -0.1491 8.1401 21 6 3.6320 -1.0257 9.2098 22 6 5.1501 0.9332 8.7913 23 6 5.1323 -1.0093 7.1812 24 8 4.6024 -0.8211 5.8583 25 1 -0.3633 0.4348 0.9312 26 1 -0.3634 0.5891 -0.8421 27 1 -0.3634 -1.0237 -0.0890 28 1 3.6851 0.9918 -0.3934 29 1 2.2490 -1.6318 1.1525 30 1 1.9777 -1.5510 3.8325 31 1 3.6492 -1.1206 3.3978 32 1 3.3727 1.0768 4.5141 33 1 1.7012 0.6457 4.9483 34 1 3.4920 1.4970 6.9353 35 1 2.2320 0.4873 7.7191 36 1 4.4054 -1.5184 9.7990 37 1 3.0182 -0.4050 9.8625 38 1 3.0061 -1.7780 8.7299 39 1 5.5927 1.5596 8.0169 40 1 4.5310 1.5472 9.4455 41 1 5.9416 0.4638 9.3754 42 1 5.0595 -2.0596 7.4635 43 1 6.1736 -0.6886 7.2125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878535384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:24 Heat of formation + Delta-G solvation = -122.056931 kcal Electronic energy + Delta-G solvation = -20978.275773 eV Core-core repulsion = 17828.967829 eV Total energy + Delta-G solvation = -3149.307944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.08451 -38.68414 -35.11753 -34.73837 -33.18380 -32.06311 -29.90710 -28.62872 -27.66646 -26.12913 -24.74439 -24.22193 -21.38364 -20.71850 -19.53788 -19.15881 -17.30338 -16.49383 -16.17354 -15.49446 -15.16377 -14.67864 -14.50189 -14.03575 -13.83026 -13.78609 -13.56151 -13.36973 -12.99070 -12.77992 -12.48599 -12.19639 -11.88309 -11.72093 -11.45054 -11.40847 -11.17403 -10.96651 -10.95801 -10.84925 -10.84780 -10.64871 -10.47080 -10.19296 -9.97622 -9.63174 -9.12973 -8.66932 -8.43127 -7.74518 -6.49347 -4.30043 3.38014 3.38533 3.58945 3.61445 3.81654 4.15885 4.30204 4.43767 4.49926 4.62670 4.88684 5.01596 5.05487 5.22359 5.29474 5.38686 5.39989 5.42229 5.46126 5.53636 5.62306 5.63916 5.67721 5.79677 5.87107 5.89817 5.94848 6.05654 6.10022 6.32929 6.41205 6.48036 6.57076 6.65213 6.92300 7.09431 7.31639 7.75223 7.97316 8.30467 8.66942 8.88003 9.32749 9.50803 10.87571 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029282 B = 0.003575 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.997865 B = 7831.180605 C = 8318.524549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.235 3.765 3 H 0.052 0.948 4 C -0.610 4.610 5 H 0.055 0.945 6 C 0.030 3.970 7 N -0.890 5.890 8 Si 1.070 2.930 9 H -0.286 1.286 10 H -0.282 1.282 11 H -0.286 1.286 12 N -0.706 5.706 13 C 0.496 3.504 14 O -0.570 6.570 15 C -0.141 4.141 16 C -0.093 4.093 17 C 0.077 3.923 18 H 0.067 0.933 19 C -0.142 4.142 20 C -0.103 4.103 21 C -0.138 4.138 22 C -0.137 4.137 23 C 0.054 3.946 24 O -0.369 6.369 25 H 0.030 0.970 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.277 0.723 29 H 0.386 0.614 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.222 -4.497 19.492 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.135 3.865 3 H 0.070 0.930 4 C -0.649 4.649 5 H 0.073 0.927 6 C -0.179 4.179 7 N -0.523 5.523 8 Si 0.898 3.102 9 H -0.212 1.212 10 H -0.207 1.207 11 H -0.212 1.212 12 N -0.355 5.355 13 C 0.281 3.719 14 O -0.451 6.451 15 C -0.182 4.182 16 C -0.131 4.131 17 C 0.020 3.980 18 H 0.085 0.915 19 C -0.179 4.179 20 C -0.103 4.103 21 C -0.195 4.195 22 C -0.194 4.194 23 C -0.023 4.023 24 O -0.288 6.288 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.219 0.781 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.407 -3.770 18.262 18.700 hybrid contribution -1.262 -0.483 1.307 1.880 sum 0.145 -4.253 19.569 20.026 Atomic orbital electron populations 1.21990 0.98699 0.99785 0.99270 1.18832 0.89822 0.95021 0.82845 0.92983 1.22111 1.03953 1.27299 1.11528 0.92659 1.26023 0.93946 0.95867 1.02078 1.70741 1.40864 1.19442 1.21270 0.83535 0.76410 0.75347 0.74940 1.21249 1.20680 1.21219 1.47607 1.64367 1.13597 1.09928 1.20694 0.78304 0.87654 0.85245 1.90595 1.52425 1.16366 1.85688 1.21671 1.03090 0.99224 0.94170 1.21330 1.02105 0.98039 0.91635 1.23223 0.83437 0.96211 0.95151 0.91469 1.23329 0.98887 1.00189 0.95527 1.21989 0.95980 0.96280 0.96066 1.21871 1.00456 0.99277 0.97901 1.21838 0.99146 0.97825 1.00582 1.23278 0.97994 0.98391 0.82626 1.88946 1.23754 1.90493 1.25607 0.95052 0.93167 0.94228 0.91078 0.78095 0.90108 0.89013 0.90374 0.90134 0.90071 0.90215 0.92401 0.92280 0.92398 0.92074 0.92381 0.92486 0.92568 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.46 37.16 0.35 -2.80 16 2 C 0.23 6.04 2.28 -69.08 -0.16 5.88 16 3 H 0.05 1.54 6.11 -51.93 -0.32 1.22 16 4 C -0.61 -16.58 8.50 -34.44 -0.29 -16.87 16 5 H 0.06 1.47 7.81 -52.48 -0.41 1.06 16 6 C 0.03 0.83 5.45 -17.82 -0.10 0.73 16 7 N -0.89 -26.78 13.63 55.43 0.76 -26.02 16 8 Si 1.07 24.30 29.91 -169.99 -5.08 19.22 16 9 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.14 7.11 56.52 0.40 -5.73 16 12 N -0.71 -16.04 5.07 -54.94 -0.28 -16.32 16 13 C 0.50 10.78 7.79 -10.99 -0.09 10.69 16 14 O -0.57 -14.34 15.65 5.56 0.09 -14.25 16 15 C -0.14 -2.34 5.63 -27.88 -0.16 -2.50 16 16 C -0.09 -1.41 4.27 -26.73 -0.11 -1.52 16 17 C 0.08 0.96 3.30 -25.68 -0.08 0.87 16 18 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 19 C -0.14 -1.45 5.71 -24.63 -0.14 -1.59 16 20 C -0.10 -0.92 0.99 -152.89 -0.15 -1.07 16 21 C -0.14 -1.00 8.25 37.16 0.31 -0.70 16 22 C -0.14 -1.08 8.28 37.16 0.31 -0.77 16 23 C 0.05 0.57 7.03 37.73 0.27 0.84 16 24 O -0.37 -5.19 10.99 -35.23 -0.39 -5.58 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.28 8.63 6.66 -40.82 -0.27 8.36 16 29 H 0.39 8.03 8.59 -40.82 -0.35 7.68 16 30 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 31 H 0.09 1.54 7.99 -51.93 -0.41 1.13 16 32 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 33 H 0.08 1.19 8.10 -51.92 -0.42 0.77 16 34 H 0.08 0.89 7.79 -51.93 -0.40 0.48 16 35 H 0.08 0.71 7.86 -51.93 -0.41 0.30 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.53 7.69 -51.93 -0.40 0.13 16 43 H 0.08 0.81 7.70 -51.93 -0.40 0.41 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -31.93 347.47 -7.38 -39.32 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.66 Total: 7.20 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -0.05 Total: -8.80 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.48 Total: -42.34 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.30 Total: -19.83 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.08 Total: 19.22 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.93 -7.38 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878535384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.739 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds