Wall clock time and date at job start Mon Mar 30 2020 00:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47132 * 2 1 4 4 C 1.50696 * 109.46942 * 240.00186 * 2 1 3 5 5 H 1.08009 * 120.00052 * 335.25772 * 4 2 1 6 6 C 1.37871 * 120.00172 * 155.25598 * 4 2 1 7 7 N 1.31513 * 119.99897 * 355.43576 * 6 4 2 8 8 Si 1.86798 * 120.00293 * 175.15347 * 6 4 2 9 9 H 1.48500 * 109.46862 * 60.00381 * 8 6 4 10 10 H 1.48503 * 109.47450 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47560 * 300.00612 * 8 6 4 12 12 N 1.46500 * 109.46984 * 119.99964 * 2 1 3 13 13 C 1.34770 * 120.00452 * 274.99819 * 12 2 1 14 14 O 1.21281 * 119.99675 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00140 * 180.02562 * 13 12 2 16 16 C 1.53000 * 109.47254 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47456 * 179.97438 * 16 15 13 18 18 H 1.09003 * 110.55169 * 305.70233 * 17 16 15 19 19 C 1.55001 * 110.62032 * 182.82003 * 17 16 15 20 20 C 1.54983 * 102.00990 * 204.59751 * 19 17 16 21 21 C 1.53005 * 110.33846 * 262.02460 * 20 19 17 22 22 C 1.53004 * 110.68194 * 139.48083 * 20 19 17 23 23 C 1.54093 * 104.25756 * 20.66758 * 20 19 17 24 24 O 1.43748 * 107.29422 * 2.16270 * 23 20 19 25 25 H 1.09005 * 109.46794 * 295.03079 * 1 2 3 26 26 H 1.09004 * 109.47332 * 55.02546 * 1 2 3 27 27 H 1.08996 * 109.47490 * 175.03422 * 1 2 3 28 28 H 0.97000 * 119.99990 * 4.84718 * 7 6 4 29 29 H 0.97006 * 119.99340 * 94.99718 * 12 2 1 30 30 H 1.09007 * 109.47000 * 299.99768 * 15 13 12 31 31 H 1.08996 * 109.47499 * 59.99751 * 15 13 12 32 32 H 1.08998 * 109.47332 * 300.00103 * 16 15 13 33 33 H 1.09008 * 109.47232 * 59.99829 * 16 15 13 34 34 H 1.09003 * 110.90502 * 322.67825 * 19 17 16 35 35 H 1.08998 * 110.90446 * 86.27650 * 19 17 16 36 36 H 1.09003 * 109.46886 * 176.21732 * 21 20 19 37 37 H 1.08994 * 109.47347 * 296.21624 * 21 20 19 38 38 H 1.08997 * 109.47086 * 56.21702 * 21 20 19 39 39 H 1.08995 * 109.46819 * 303.58042 * 22 20 19 40 40 H 1.09001 * 109.47305 * 63.58229 * 22 20 19 41 41 H 1.09003 * 109.46665 * 183.58382 * 22 20 19 42 42 H 1.08997 * 109.88107 * 242.74543 * 23 20 19 43 43 H 1.08999 * 110.00795 * 121.65994 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 1.4114 -1.4455 -1.7209 6 6 3.2845 -0.4218 -1.7302 7 7 4.0043 0.5359 -1.1879 8 14 3.9618 -1.3964 -3.1727 9 1 3.0627 -1.2368 -4.3437 10 1 5.3167 -0.8950 -3.5163 11 1 4.0448 -2.8327 -2.8044 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0184 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6500 -0.7287 3.5874 16 6 2.7008 0.2542 4.7588 17 6 3.2107 -0.4671 6.0081 18 1 2.6090 -1.3531 6.2108 19 6 3.2059 0.4871 7.2295 20 6 4.2866 -0.1491 8.1401 21 6 3.6320 -1.0257 9.2098 22 6 5.1501 0.9332 8.7913 23 6 5.1323 -1.0093 7.1812 24 8 4.6024 -0.8211 5.8583 25 1 -0.3633 0.4348 0.9312 26 1 -0.3634 0.5891 -0.8421 27 1 -0.3634 -1.0237 -0.0890 28 1 3.6851 0.9918 -0.3934 29 1 2.2490 -1.6318 1.1525 30 1 1.9777 -1.5510 3.8325 31 1 3.6492 -1.1206 3.3978 32 1 3.3727 1.0768 4.5141 33 1 1.7012 0.6457 4.9483 34 1 3.4920 1.4970 6.9353 35 1 2.2320 0.4873 7.7191 36 1 4.4054 -1.5184 9.7990 37 1 3.0182 -0.4050 9.8625 38 1 3.0061 -1.7780 8.7299 39 1 5.5927 1.5596 8.0169 40 1 4.5310 1.5472 9.4455 41 1 5.9416 0.4638 9.3754 42 1 5.0595 -2.0596 7.4635 43 1 6.1736 -0.6886 7.2125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878535384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:23 Heat of formation + Delta-G solvation = -142.979620 kcal Electronic energy + Delta-G solvation = -20979.183049 eV Core-core repulsion = 17828.967829 eV Total energy + Delta-G solvation = -3150.215220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.04482 -40.41587 -36.95456 -35.72359 -34.46160 -34.09533 -31.59208 -29.91151 -28.24079 -26.92925 -26.78017 -25.54209 -23.07930 -21.95827 -21.07127 -20.22138 -19.27264 -17.83648 -17.48039 -16.58277 -16.45566 -16.32069 -15.80162 -15.63367 -15.42997 -14.93089 -14.58008 -14.44704 -14.35986 -13.94931 -13.78023 -13.58718 -13.05481 -12.96886 -12.89785 -12.67575 -12.62868 -12.41327 -12.22293 -12.12613 -12.04866 -11.88789 -11.60899 -11.56742 -11.40241 -11.10990 -10.58457 -10.55561 -10.53848 -9.67397 -8.71567 -6.53124 1.55751 1.61516 1.82355 1.85034 2.51114 2.58659 2.92073 3.25025 3.46999 3.69445 3.87713 3.92040 3.99172 4.10087 4.28046 4.34368 4.42122 4.47712 4.54364 4.66381 4.69742 4.71494 4.74791 4.76274 4.78284 4.81178 4.96030 5.00456 5.05217 5.09799 5.18748 5.20422 5.24965 5.28904 5.30108 5.42124 5.74146 5.98055 6.01713 6.10547 6.43160 7.00091 7.37234 7.54696 8.63681 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029282 B = 0.003575 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.997865 B = 7831.180605 C = 8318.524549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.234 3.766 3 H 0.004 0.996 4 C -0.615 4.615 5 H 0.064 0.936 6 C -0.020 4.020 7 N -0.922 5.922 8 Si 1.121 2.879 9 H -0.269 1.269 10 H -0.290 1.290 11 H -0.261 1.261 12 N -0.706 5.706 13 C 0.489 3.511 14 O -0.609 6.609 15 C -0.127 4.127 16 C -0.089 4.089 17 C 0.080 3.920 18 H 0.088 0.912 19 C -0.141 4.141 20 C -0.098 4.098 21 C -0.135 4.135 22 C -0.136 4.136 23 C 0.046 3.954 24 O -0.401 6.401 25 H 0.031 0.969 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.256 0.744 29 H 0.398 0.602 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.310 -6.776 20.734 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.132 3.868 3 H 0.022 0.978 4 C -0.653 4.653 5 H 0.082 0.918 6 C -0.221 4.221 7 N -0.557 5.557 8 Si 0.942 3.058 9 H -0.194 1.194 10 H -0.216 1.216 11 H -0.186 1.186 12 N -0.355 5.355 13 C 0.277 3.723 14 O -0.492 6.492 15 C -0.167 4.167 16 C -0.127 4.127 17 C 0.023 3.977 18 H 0.105 0.895 19 C -0.179 4.179 20 C -0.098 4.098 21 C -0.192 4.192 22 C -0.193 4.193 23 C -0.030 4.030 24 O -0.321 6.321 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.232 0.768 30 H 0.135 0.865 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.855 -6.079 19.530 20.472 hybrid contribution -1.135 0.265 0.951 1.504 sum -0.280 -5.814 20.481 21.292 Atomic orbital electron populations 1.21862 0.96338 1.01063 0.99422 1.18639 0.91658 0.92648 0.83866 0.97839 1.22394 1.03985 1.26936 1.12029 0.91771 1.27549 0.94588 0.95725 1.04283 1.70900 1.41792 1.21507 1.21511 0.82902 0.75492 0.75085 0.72367 1.19384 1.21604 1.18602 1.47230 1.64587 1.14046 1.09599 1.21553 0.77251 0.87287 0.86257 1.90575 1.53955 1.18295 1.86387 1.21628 1.03382 0.99885 0.91758 1.21276 1.01713 0.97125 0.92575 1.23211 0.83153 0.97095 0.94206 0.89459 1.23336 1.00396 0.99055 0.95098 1.21981 0.95394 0.96417 0.96018 1.21856 1.00784 0.99098 0.97438 1.21836 0.99514 0.97594 1.00370 1.23493 0.98290 0.99564 0.81650 1.88905 1.24578 1.90737 1.27868 0.94971 0.93029 0.92203 0.93401 0.76760 0.86481 0.89068 0.93449 0.89899 0.91450 0.88413 0.91347 0.91362 0.92316 0.93515 0.91473 0.91205 0.91263 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 9.46 71.98 0.68 -5.08 16 2 C 0.23 12.21 2.28 44.25 0.10 12.31 16 3 H 0.00 0.22 6.11 -2.39 -0.01 0.21 16 4 C -0.62 -33.31 8.50 25.60 0.22 -33.10 16 5 H 0.06 3.32 7.81 -2.91 -0.02 3.29 16 6 C -0.02 -1.13 5.45 84.65 0.46 -0.67 16 7 N -0.92 -57.13 13.63 21.44 0.29 -56.84 16 8 Si 1.12 48.21 29.91 68.60 2.05 50.26 16 9 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 10 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 12 N -0.71 -32.20 5.07 -446.11 -2.26 -34.46 16 13 C 0.49 21.54 7.79 87.66 0.68 22.22 16 14 O -0.61 -31.75 15.65 -3.03 -0.05 -31.80 16 15 C -0.13 -4.09 5.63 29.85 0.17 -3.92 16 16 C -0.09 -2.67 4.27 30.59 0.13 -2.54 16 17 C 0.08 1.88 3.30 31.28 0.10 1.98 16 18 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 19 C -0.14 -2.70 5.71 31.96 0.18 -2.52 16 20 C -0.10 -1.55 0.99 -51.13 -0.05 -1.61 16 21 C -0.13 -1.55 8.25 71.98 0.59 -0.96 16 22 C -0.14 -1.94 8.28 71.98 0.60 -1.34 16 23 C 0.05 0.91 7.03 72.35 0.51 1.42 16 24 O -0.40 -10.96 10.99 -148.98 -1.64 -12.59 16 25 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 27 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.26 16.73 6.66 -92.71 -0.62 16.11 16 29 H 0.40 16.27 8.59 -92.70 -0.80 15.47 16 30 H 0.12 2.96 8.14 -2.38 -0.02 2.94 16 31 H 0.09 3.01 7.99 -2.39 -0.02 2.99 16 32 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 33 H 0.08 2.42 8.10 -2.38 -0.02 2.41 16 34 H 0.07 1.46 7.79 -2.39 -0.02 1.44 16 35 H 0.10 1.50 7.86 -2.39 -0.02 1.48 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 1.16 7.69 -2.39 -0.02 1.14 16 43 H 0.08 1.56 7.70 -2.39 -0.02 1.54 16 Total: -1.00 -71.18 347.47 3.10 -68.08 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.32 Total: 31.15 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 4.38 Total: -13.79 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -1.97 Total: -91.30 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -1.68 Total: -44.39 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.05 Total: 50.26 kcal Total: -71.18 3.10 -68.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878535384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.903 kcal (2) G-P(sol) polarization free energy of solvation -71.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds