Wall clock time and date at job start Mon Mar 30 2020 00:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47153 * 2 1 4 4 C 1.50696 * 109.46893 * 239.99831 * 2 1 3 5 5 H 1.08002 * 119.99637 * 245.45575 * 4 2 1 6 6 C 1.37875 * 120.00208 * 65.46787 * 4 2 1 7 7 N 1.31518 * 120.00047 * 9.55284 * 6 4 2 8 8 Si 1.86801 * 120.00140 * 189.55786 * 6 4 2 9 9 H 1.48494 * 109.47321 * 84.99022 * 8 6 4 10 10 H 1.48502 * 109.46990 * 204.99159 * 8 6 4 11 11 H 1.48499 * 109.46838 * 324.99044 * 8 6 4 12 12 N 1.46501 * 109.46812 * 119.99882 * 2 1 3 13 13 C 1.34768 * 120.00223 * 275.00045 * 12 2 1 14 14 O 1.21288 * 119.99916 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00233 * 179.97438 * 13 12 2 16 16 C 1.53003 * 109.47099 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.46727 * 180.02562 * 16 15 13 18 18 H 1.08998 * 110.55324 * 56.43185 * 17 16 15 19 19 C 1.55002 * 110.74986 * 179.40240 * 17 16 15 20 20 C 1.54812 * 102.09292 * 155.59158 * 19 17 16 21 21 C 1.53000 * 110.48647 * 220.44405 * 20 19 17 22 22 C 1.53002 * 110.48763 * 97.79257 * 20 19 17 23 23 C 1.54102 * 104.18511 * 339.11792 * 20 19 17 24 24 O 1.43738 * 107.29824 * 357.97156 * 23 20 19 25 25 H 1.09002 * 109.47238 * 183.67816 * 1 2 3 26 26 H 1.09000 * 109.47066 * 303.68109 * 1 2 3 27 27 H 1.09000 * 109.46833 * 63.67885 * 1 2 3 28 28 H 0.97001 * 120.00223 * 180.02562 * 7 6 4 29 29 H 0.97006 * 119.99637 * 95.00048 * 12 2 1 30 30 H 1.09001 * 109.46898 * 60.00394 * 15 13 12 31 31 H 1.08991 * 109.47249 * 299.99942 * 15 13 12 32 32 H 1.09001 * 109.46545 * 60.00641 * 16 15 13 33 33 H 1.08991 * 109.47401 * 300.00313 * 16 15 13 34 34 H 1.09001 * 110.90769 * 37.39214 * 19 17 16 35 35 H 1.08998 * 110.90657 * 273.78849 * 19 17 16 36 36 H 1.09009 * 109.46903 * 176.21894 * 21 20 19 37 37 H 1.08997 * 109.46833 * 296.21571 * 21 20 19 38 38 H 1.08993 * 109.47135 * 56.21799 * 21 20 19 39 39 H 1.08994 * 109.47454 * 303.77953 * 22 20 19 40 40 H 1.08997 * 109.46915 * 63.78314 * 22 20 19 41 41 H 1.09001 * 109.46754 * 183.77625 * 22 20 19 42 42 H 1.09007 * 109.87869 * 117.39619 * 23 20 19 43 43 H 1.09004 * 109.87945 * 238.39295 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5786 -1.6371 -1.1337 6 6 1.7947 -0.1774 -2.4796 7 7 1.2994 1.0356 -2.5935 8 14 2.1760 -1.1781 -4.0101 9 1 1.0241 -2.0610 -4.3241 10 1 2.4228 -0.2615 -5.1521 11 1 3.3845 -2.0074 -3.7709 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3571 14 8 1.8581 1.1584 2.4117 15 6 2.6487 -0.7289 3.5878 16 6 2.7009 0.2545 4.7588 17 6 3.2109 -0.4668 6.0080 18 1 4.1832 -0.9209 5.8175 19 6 3.2897 0.5075 7.2110 20 6 3.1829 -0.4571 8.4171 21 6 2.2934 0.1446 9.5069 22 6 4.5724 -0.7753 8.9731 23 6 2.5335 -1.7254 7.8301 24 8 2.2609 -1.4632 6.4434 25 1 -0.3634 -1.0256 0.0659 26 1 -0.3633 0.5699 0.8552 27 1 -0.3633 0.4557 -0.9211 28 1 1.1319 1.4105 -3.4724 29 1 2.2490 -1.6318 1.1526 30 1 3.6479 -1.1214 3.3987 31 1 1.9758 -1.5506 3.8326 32 1 1.7019 0.6473 4.9480 33 1 3.3740 1.0759 4.5138 34 1 2.4555 1.2089 7.1988 35 1 4.2419 1.0378 7.2202 36 1 2.1752 -0.5745 10.3175 37 1 2.7554 1.0536 9.8921 38 1 1.3162 0.3833 9.0875 39 1 5.1971 -1.1831 8.1785 40 1 5.0264 0.1369 9.3601 41 1 4.4835 -1.5061 9.7768 42 1 3.2188 -2.5683 7.9202 43 1 1.6052 -1.9446 8.3577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878535385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:25 Heat of formation + Delta-G solvation = -115.797472 kcal Electronic energy + Delta-G solvation = -20729.808125 eV Core-core repulsion = 17580.771612 eV Total energy + Delta-G solvation = -3149.036513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.14365 -38.73933 -35.06862 -34.68505 -33.23757 -32.27626 -29.76568 -28.43494 -27.70543 -26.16920 -25.19416 -24.33527 -21.35516 -20.63088 -19.53730 -19.22439 -17.04025 -16.56027 -15.89537 -15.52093 -15.15604 -15.05756 -14.62007 -14.29258 -13.96234 -13.80255 -13.54210 -13.08635 -12.90261 -12.56643 -12.33150 -12.21030 -11.91564 -11.74963 -11.49729 -11.43977 -11.09639 -11.02216 -10.95475 -10.88242 -10.78075 -10.62556 -10.53497 -10.31167 -10.23184 -9.68760 -9.07536 -8.86163 -8.46551 -7.84052 -6.11228 -4.16460 3.27175 3.33592 3.35143 3.53095 3.76050 4.09764 4.23418 4.39586 4.48064 4.58723 4.85978 4.98262 5.01760 5.21542 5.22461 5.27813 5.34978 5.35754 5.40667 5.47972 5.57350 5.59808 5.63479 5.74635 5.83696 5.85459 5.90021 6.01670 6.04172 6.25293 6.42274 6.81190 6.85754 6.95362 7.13847 7.50349 7.62128 7.72444 7.90727 8.11687 8.76425 8.84619 9.23446 9.50039 10.97366 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.048088 B = 0.003001 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.127427 B = 9328.092607 C = 9487.159799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.261 3.739 3 H 0.054 0.946 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.711 5.711 13 C 0.500 3.500 14 O -0.560 6.560 15 C -0.139 4.139 16 C -0.094 4.094 17 C 0.077 3.923 18 H 0.069 0.931 19 C -0.142 4.142 20 C -0.103 4.103 21 C -0.137 4.137 22 C -0.138 4.138 23 C 0.055 3.945 24 O -0.370 6.370 25 H 0.028 0.972 26 H 0.019 0.981 27 H 0.071 0.929 28 H 0.264 0.736 29 H 0.388 0.612 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.985 -4.961 21.962 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.159 3.841 3 H 0.072 0.928 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.359 5.359 13 C 0.285 3.715 14 O -0.439 6.439 15 C -0.180 4.180 16 C -0.132 4.132 17 C 0.020 3.980 18 H 0.086 0.914 19 C -0.180 4.180 20 C -0.103 4.103 21 C -0.194 4.194 22 C -0.195 4.195 23 C -0.022 4.022 24 O -0.290 6.290 25 H 0.047 0.953 26 H 0.038 0.962 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.220 0.780 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.549 -4.066 21.693 22.534 hybrid contribution 0.445 -0.966 -0.783 1.321 sum 4.994 -5.032 20.910 22.079 Atomic orbital electron populations 1.22011 0.98981 0.98554 1.00438 1.18724 0.90510 0.94546 0.80271 0.92779 1.21193 1.37065 1.08620 0.90533 0.92108 1.24899 0.95023 0.94630 0.99043 1.69990 1.43950 1.13765 1.24166 0.86525 0.78713 0.79948 0.82286 1.20428 1.21185 1.19915 1.46521 1.65193 1.13518 1.10673 1.20530 0.78551 0.87538 0.84906 1.90640 1.51632 1.16308 1.85355 1.21631 1.02783 0.99820 0.93721 1.21340 1.03390 0.97304 0.91150 1.23232 0.92419 0.87986 0.94389 0.91355 1.23303 1.03322 0.98045 0.93300 1.21962 0.96363 0.95768 0.96243 1.21840 0.99340 1.00646 0.97565 1.21867 0.95109 1.01691 1.00859 1.23272 1.00130 0.95938 0.82907 1.88913 1.55804 1.60171 1.24082 0.95294 0.96180 0.90973 0.92589 0.77977 0.89769 0.88995 0.90410 0.89890 0.90048 0.90167 0.92516 0.92351 0.92102 0.92350 0.92248 0.92406 0.92552 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.36 37.16 0.35 -3.22 16 2 C 0.26 6.84 2.42 -69.08 -0.17 6.67 16 3 H 0.05 1.64 7.52 -51.93 -0.39 1.25 16 4 C -0.54 -14.52 8.66 -34.44 -0.30 -14.82 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.86 5.17 -17.82 -0.09 1.77 16 7 N -0.88 -25.54 12.16 55.43 0.67 -24.87 16 8 Si 0.90 20.93 29.55 -169.99 -5.02 15.90 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.71 -15.31 5.07 -54.93 -0.28 -15.59 16 13 C 0.50 10.24 7.79 -10.99 -0.09 10.15 16 14 O -0.56 -13.69 15.65 5.55 0.09 -13.60 16 15 C -0.14 -2.08 5.62 -27.88 -0.16 -2.24 16 16 C -0.09 -1.30 4.29 -26.73 -0.11 -1.42 16 17 C 0.08 0.87 3.32 -25.67 -0.09 0.78 16 18 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 19 C -0.14 -1.34 5.70 -24.72 -0.14 -1.48 16 20 C -0.10 -0.84 0.99 -152.98 -0.15 -0.99 16 21 C -0.14 -0.97 8.27 37.16 0.31 -0.67 16 22 C -0.14 -0.92 8.26 37.16 0.31 -0.62 16 23 C 0.05 0.51 7.04 37.73 0.27 0.78 16 24 O -0.37 -4.66 10.89 -35.23 -0.38 -5.04 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 1.95 6.83 -51.93 -0.35 1.60 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.39 7.23 8.53 -40.82 -0.35 6.88 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 1.31 7.92 -51.93 -0.41 0.90 16 32 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 33 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 34 H 0.08 0.81 7.78 -51.93 -0.40 0.41 16 35 H 0.08 0.67 7.86 -51.93 -0.41 0.26 16 36 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.48 7.69 -51.93 -0.40 0.08 16 43 H 0.08 0.70 7.69 -51.93 -0.40 0.30 16 LS Contribution 347.01 15.07 5.23 5.23 Total: -1.00 -31.61 347.01 -7.48 -39.09 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.72 Total: 4.16 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -0.06 Total: -5.28 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.40 Total: -40.46 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.30 Total: -18.64 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.61 -7.48 -39.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878535385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.705 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds