Wall clock time and date at job start Mon Mar 30 2020 00:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47153 * 2 1 4 4 C 1.50696 * 109.46893 * 239.99831 * 2 1 3 5 5 H 1.08002 * 119.99637 * 245.45575 * 4 2 1 6 6 C 1.37875 * 120.00208 * 65.46787 * 4 2 1 7 7 N 1.31518 * 120.00047 * 9.55284 * 6 4 2 8 8 Si 1.86801 * 120.00140 * 189.55786 * 6 4 2 9 9 H 1.48494 * 109.47321 * 84.99022 * 8 6 4 10 10 H 1.48502 * 109.46990 * 204.99159 * 8 6 4 11 11 H 1.48499 * 109.46838 * 324.99044 * 8 6 4 12 12 N 1.46501 * 109.46812 * 119.99882 * 2 1 3 13 13 C 1.34768 * 120.00223 * 275.00045 * 12 2 1 14 14 O 1.21288 * 119.99916 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00233 * 179.97438 * 13 12 2 16 16 C 1.53003 * 109.47099 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.46727 * 180.02562 * 16 15 13 18 18 H 1.08998 * 110.55324 * 56.43185 * 17 16 15 19 19 C 1.55002 * 110.74986 * 179.40240 * 17 16 15 20 20 C 1.54812 * 102.09292 * 155.59158 * 19 17 16 21 21 C 1.53000 * 110.48647 * 220.44405 * 20 19 17 22 22 C 1.53002 * 110.48763 * 97.79257 * 20 19 17 23 23 C 1.54102 * 104.18511 * 339.11792 * 20 19 17 24 24 O 1.43738 * 107.29824 * 357.97156 * 23 20 19 25 25 H 1.09002 * 109.47238 * 183.67816 * 1 2 3 26 26 H 1.09000 * 109.47066 * 303.68109 * 1 2 3 27 27 H 1.09000 * 109.46833 * 63.67885 * 1 2 3 28 28 H 0.97001 * 120.00223 * 180.02562 * 7 6 4 29 29 H 0.97006 * 119.99637 * 95.00048 * 12 2 1 30 30 H 1.09001 * 109.46898 * 60.00394 * 15 13 12 31 31 H 1.08991 * 109.47249 * 299.99942 * 15 13 12 32 32 H 1.09001 * 109.46545 * 60.00641 * 16 15 13 33 33 H 1.08991 * 109.47401 * 300.00313 * 16 15 13 34 34 H 1.09001 * 110.90769 * 37.39214 * 19 17 16 35 35 H 1.08998 * 110.90657 * 273.78849 * 19 17 16 36 36 H 1.09009 * 109.46903 * 176.21894 * 21 20 19 37 37 H 1.08997 * 109.46833 * 296.21571 * 21 20 19 38 38 H 1.08993 * 109.47135 * 56.21799 * 21 20 19 39 39 H 1.08994 * 109.47454 * 303.77953 * 22 20 19 40 40 H 1.08997 * 109.46915 * 63.78314 * 22 20 19 41 41 H 1.09001 * 109.46754 * 183.77625 * 22 20 19 42 42 H 1.09007 * 109.87869 * 117.39619 * 23 20 19 43 43 H 1.09004 * 109.87945 * 238.39295 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5786 -1.6371 -1.1337 6 6 1.7947 -0.1774 -2.4796 7 7 1.2994 1.0356 -2.5935 8 14 2.1760 -1.1781 -4.0101 9 1 1.0241 -2.0610 -4.3241 10 1 2.4228 -0.2615 -5.1521 11 1 3.3845 -2.0074 -3.7709 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3571 14 8 1.8581 1.1584 2.4117 15 6 2.6487 -0.7289 3.5878 16 6 2.7009 0.2545 4.7588 17 6 3.2109 -0.4668 6.0080 18 1 4.1832 -0.9209 5.8175 19 6 3.2897 0.5075 7.2110 20 6 3.1829 -0.4571 8.4171 21 6 2.2934 0.1446 9.5069 22 6 4.5724 -0.7753 8.9731 23 6 2.5335 -1.7254 7.8301 24 8 2.2609 -1.4632 6.4434 25 1 -0.3634 -1.0256 0.0659 26 1 -0.3633 0.5699 0.8552 27 1 -0.3633 0.4557 -0.9211 28 1 1.1319 1.4105 -3.4724 29 1 2.2490 -1.6318 1.1526 30 1 3.6479 -1.1214 3.3987 31 1 1.9758 -1.5506 3.8326 32 1 1.7019 0.6473 4.9480 33 1 3.3740 1.0759 4.5138 34 1 2.4555 1.2089 7.1988 35 1 4.2419 1.0378 7.2202 36 1 2.1752 -0.5745 10.3175 37 1 2.7554 1.0536 9.8921 38 1 1.3162 0.3833 9.0875 39 1 5.1971 -1.1831 8.1785 40 1 5.0264 0.1369 9.3601 41 1 4.4835 -1.5061 9.7768 42 1 3.2188 -2.5683 7.9202 43 1 1.6052 -1.9446 8.3577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878535385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:25 Heat of formation + Delta-G solvation = -136.381211 kcal Electronic energy + Delta-G solvation = -20730.700703 eV Core-core repulsion = 17580.771612 eV Total energy + Delta-G solvation = -3149.929091 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.01326 -40.38002 -36.76995 -35.69116 -34.42824 -34.23541 -31.34584 -29.79429 -28.22464 -27.31691 -26.86984 -25.52738 -22.92369 -21.85930 -21.08111 -20.17733 -18.85174 -17.47493 -17.44738 -17.13104 -16.47212 -16.25197 -15.91032 -15.76186 -14.93174 -14.58484 -14.51685 -14.44254 -14.25732 -13.93748 -13.72306 -13.64197 -13.01742 -12.97549 -12.87102 -12.67998 -12.64045 -12.38175 -12.36602 -12.19216 -12.12867 -12.01179 -11.57975 -11.52904 -11.36663 -11.16336 -10.62952 -10.55365 -10.50354 -9.73204 -8.20941 -6.34744 1.44302 1.46057 1.55641 1.87521 2.36629 2.67455 2.95316 3.11101 3.49452 3.72749 3.91385 3.95265 4.02392 4.15451 4.33196 4.38141 4.48366 4.58213 4.70681 4.74601 4.78010 4.79140 4.81102 4.83839 4.88402 4.99783 5.03340 5.04003 5.08694 5.15565 5.24148 5.29883 5.32757 5.42227 5.44588 5.61788 5.62441 5.90814 6.03739 6.04296 6.74382 7.00304 7.32391 7.60391 8.88529 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.048088 B = 0.003001 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.127427 B = 9328.092607 C = 9487.159799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.267 3.733 3 H 0.001 0.999 4 C -0.549 4.549 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.972 3.028 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.262 1.262 12 N -0.708 5.708 13 C 0.494 3.506 14 O -0.605 6.605 15 C -0.123 4.123 16 C -0.091 4.091 17 C 0.081 3.919 18 H 0.085 0.915 19 C -0.143 4.143 20 C -0.099 4.099 21 C -0.136 4.136 22 C -0.135 4.135 23 C 0.048 3.952 24 O -0.396 6.396 25 H 0.047 0.953 26 H 0.014 0.986 27 H 0.049 0.951 28 H 0.266 0.734 29 H 0.405 0.595 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.300 -7.177 23.007 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.163 3.837 3 H 0.019 0.981 4 C -0.587 4.587 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.796 3.204 9 H -0.195 1.195 10 H -0.213 1.213 11 H -0.186 1.186 12 N -0.357 5.357 13 C 0.282 3.718 14 O -0.487 6.487 15 C -0.163 4.163 16 C -0.129 4.129 17 C 0.024 3.976 18 H 0.103 0.897 19 C -0.181 4.181 20 C -0.099 4.099 21 C -0.193 4.193 22 C -0.193 4.193 23 C -0.029 4.029 24 O -0.316 6.316 25 H 0.067 0.933 26 H 0.033 0.967 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.240 0.760 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.877 -6.324 22.771 24.352 hybrid contribution 0.017 -0.233 -1.058 1.083 sum 5.894 -6.557 21.713 23.435 Atomic orbital electron populations 1.21844 0.98595 0.99297 0.98978 1.18339 0.90804 0.92319 0.82257 0.98101 1.21535 1.37177 1.09023 0.90962 0.90742 1.25846 0.94741 0.95496 1.02512 1.70143 1.45140 1.15595 1.24975 0.85368 0.79036 0.78257 0.77748 1.19528 1.21311 1.18606 1.46320 1.65270 1.14259 1.09854 1.21535 0.77273 0.87134 0.85894 1.90620 1.53372 1.18632 1.86111 1.21604 1.04271 0.99616 0.90801 1.21287 1.02146 0.97278 0.92205 1.23182 0.92544 0.88236 0.93609 0.89688 1.23312 1.03554 0.97902 0.93287 1.21954 0.97403 0.94692 0.95836 1.21835 0.98604 1.01265 0.97596 1.21855 0.93938 1.02343 1.01130 1.23467 1.00871 0.96939 0.81573 1.88872 1.56481 1.60404 1.25847 0.93349 0.96683 0.93229 0.92551 0.75971 0.86780 0.87577 0.92739 0.90449 0.91247 0.88870 0.91261 0.91730 0.93248 0.92365 0.91602 0.91346 0.91366 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.62 9.36 71.98 0.67 -5.95 16 2 C 0.27 14.25 2.42 44.25 0.11 14.35 16 3 H 0.00 0.07 7.52 -2.39 -0.02 0.05 16 4 C -0.55 -29.67 8.66 25.60 0.22 -29.45 16 5 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 6 C 0.01 0.78 5.17 84.65 0.44 1.22 16 7 N -0.92 -54.49 12.16 21.45 0.26 -54.23 16 8 Si 0.97 42.51 29.55 68.60 2.03 44.54 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 12 N -0.71 -30.34 5.07 -446.09 -2.26 -32.60 16 13 C 0.49 20.31 7.79 87.66 0.68 20.99 16 14 O -0.60 -30.63 15.65 -3.05 -0.05 -30.68 16 15 C -0.12 -3.50 5.62 29.85 0.17 -3.34 16 16 C -0.09 -2.48 4.29 30.59 0.13 -2.35 16 17 C 0.08 1.70 3.32 31.28 0.10 1.81 16 18 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 19 C -0.14 -2.50 5.70 31.90 0.18 -2.32 16 20 C -0.10 -1.40 0.99 -51.19 -0.05 -1.45 16 21 C -0.14 -1.70 8.27 71.98 0.60 -1.11 16 22 C -0.14 -1.43 8.26 71.98 0.59 -0.84 16 23 C 0.05 0.81 7.04 72.36 0.51 1.32 16 24 O -0.40 -9.34 10.89 -148.98 -1.62 -10.96 16 25 H 0.05 2.24 8.14 -2.39 -0.02 2.23 16 26 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 2.75 6.83 -2.39 -0.02 2.74 16 28 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.41 14.47 8.53 -92.70 -0.79 13.68 16 30 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.11 2.79 7.92 -2.39 -0.02 2.77 16 32 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 33 H 0.08 2.17 8.10 -2.39 -0.02 2.15 16 34 H 0.07 1.37 7.78 -2.39 -0.02 1.35 16 35 H 0.09 1.37 7.86 -2.39 -0.02 1.35 16 36 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.05 0.73 8.13 -2.39 -0.02 0.71 16 39 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 0.98 7.69 -2.38 -0.02 0.96 16 43 H 0.09 1.34 7.69 -2.38 -0.02 1.32 16 Total: -1.00 -69.84 347.01 2.89 -66.95 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.18 Total: 24.08 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 4.36 Total: -7.10 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -2.00 Total: -86.83 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -1.67 Total: -41.64 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -69.84 2.89 -66.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878535385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.434 kcal (2) G-P(sol) polarization free energy of solvation -69.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds