Wall clock time and date at job start Mon Mar 30 2020 00:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31514 * 120.00481 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99745 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47209 * 90.00365 * 8 6 4 10 10 H 1.48506 * 109.47294 * 210.00213 * 8 6 4 11 11 H 1.48501 * 109.47275 * 330.00116 * 8 6 4 12 12 N 1.46493 * 109.47438 * 239.99415 * 2 1 3 13 13 C 1.34781 * 120.00043 * 84.99885 * 12 2 1 14 14 O 1.21282 * 119.99938 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00076 * 180.02562 * 13 12 2 16 16 C 1.53008 * 109.46799 * 180.02562 * 15 13 12 17 17 C 1.53008 * 109.46693 * 180.02562 * 16 15 13 18 18 H 1.09002 * 110.54839 * 305.69564 * 17 16 15 19 19 C 1.54998 * 110.61512 * 182.81986 * 17 16 15 20 20 C 1.54981 * 102.01222 * 204.59358 * 19 17 16 21 21 C 1.53001 * 110.33996 * 262.02716 * 20 19 17 22 22 C 1.52991 * 110.68442 * 139.47787 * 20 19 17 23 23 C 1.54101 * 104.25104 * 20.66483 * 20 19 17 24 24 O 1.43739 * 107.29466 * 2.16798 * 23 20 19 25 25 H 1.09002 * 109.46792 * 60.00409 * 1 2 3 26 26 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 0.97001 * 120.00269 * 265.01038 * 12 2 1 30 30 H 1.08996 * 109.47163 * 300.00170 * 15 13 12 31 31 H 1.08993 * 109.47201 * 60.00387 * 15 13 12 32 32 H 1.09001 * 109.46723 * 299.99493 * 16 15 13 33 33 H 1.08993 * 109.47281 * 60.00004 * 16 15 13 34 34 H 1.08993 * 110.90866 * 322.67559 * 19 17 16 35 35 H 1.09002 * 110.90426 * 86.27454 * 19 17 16 36 36 H 1.09002 * 109.47062 * 176.20843 * 21 20 19 37 37 H 1.08989 * 109.47222 * 296.21394 * 21 20 19 38 38 H 1.08998 * 109.47267 * 56.22036 * 21 20 19 39 39 H 1.08996 * 109.47618 * 303.58196 * 22 20 19 40 40 H 1.09000 * 109.47420 * 63.58812 * 22 20 19 41 41 H 1.09005 * 109.47318 * 183.58704 * 22 20 19 42 42 H 1.08998 * 109.88177 * 242.74174 * 23 20 19 43 43 H 1.09004 * 110.00012 * 121.66317 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 2.1425 -0.8556 3.5567 8 14 0.6368 1.2877 2.6540 9 1 -0.7926 0.8881 2.7031 10 1 0.9937 2.0040 3.9050 11 1 0.8610 2.1824 1.4902 12 7 2.0184 -0.6907 -1.1960 13 6 2.1471 -0.0184 -2.3571 14 8 1.8591 1.1584 -2.4116 15 6 2.6490 -0.7291 -3.5876 16 6 2.7011 0.2542 -4.7587 17 6 3.2101 -0.4675 -6.0082 18 1 4.1646 -0.9538 -5.8070 19 6 3.3407 0.5215 -7.1945 20 6 3.2195 -0.4234 -8.4170 21 6 4.6072 -0.7755 -8.9566 22 6 2.3669 0.2181 -9.5134 23 6 2.5235 -1.6795 -7.8580 24 8 2.2375 -1.4285 -6.4719 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.9118 -0.5216 4.4376 29 1 2.2490 -1.6319 -1.1524 30 1 3.6480 -1.1216 -3.3984 31 1 1.9761 -1.5508 -3.8324 32 1 1.7021 0.6470 -4.9480 33 1 3.3742 1.0757 -4.5137 34 1 2.5296 1.2495 -7.1851 35 1 4.3096 1.0205 -7.1799 36 1 4.5088 -1.4922 -9.7720 37 1 5.0942 0.1278 -9.3237 38 1 5.2070 -1.2132 -8.1587 39 1 1.3898 0.4800 -9.1075 40 1 2.8616 1.1181 -9.8786 41 1 2.2417 -0.4867 -10.3355 42 1 3.1844 -2.5414 -7.9499 43 1 1.5961 -1.8643 -8.4002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878535387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:29 Heat of formation + Delta-G solvation = -106.590992 kcal Electronic energy + Delta-G solvation = -20801.645224 eV Core-core repulsion = 17653.007934 eV Total energy + Delta-G solvation = -3148.637290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.18403 -38.94477 -35.20896 -34.83362 -33.33618 -32.32697 -30.24132 -28.87082 -27.72891 -26.22021 -25.18575 -24.43125 -21.43066 -20.68701 -19.61220 -19.40174 -17.20020 -16.59830 -16.04992 -15.60639 -15.56053 -15.10505 -14.72137 -14.37222 -13.97434 -13.85854 -13.60087 -13.12993 -13.03859 -12.89155 -12.56963 -12.29861 -12.15566 -11.95924 -11.78075 -11.57172 -11.46826 -11.25433 -11.04464 -10.93003 -10.81834 -10.73810 -10.57820 -10.15227 -9.73182 -9.67712 -9.18938 -9.03009 -8.72456 -8.07889 -6.18282 -4.20426 3.25665 3.35016 3.37378 3.42788 3.71770 3.98232 4.17800 4.34487 4.41157 4.54674 4.79040 4.94015 4.97470 5.13168 5.16620 5.23815 5.29742 5.31821 5.34423 5.43345 5.51312 5.56292 5.58667 5.67966 5.78186 5.81182 5.84550 5.92102 5.98793 6.16447 6.33831 6.36306 6.43745 6.61551 6.81188 6.90911 7.25051 7.36285 7.57591 8.20536 8.59912 8.79590 9.03105 9.43286 10.94016 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.048709 B = 0.003146 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.703305 B = 8897.969668 C = 9060.932035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.235 3.765 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.704 5.704 13 C 0.502 3.498 14 O -0.561 6.561 15 C -0.139 4.139 16 C -0.095 4.095 17 C 0.077 3.923 18 H 0.069 0.931 19 C -0.142 4.142 20 C -0.103 4.103 21 C -0.138 4.138 22 C -0.137 4.137 23 C 0.055 3.945 24 O -0.371 6.371 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.267 0.733 29 H 0.395 0.605 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.088 -0.873 -24.814 25.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.531 5.531 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.352 5.352 13 C 0.288 3.712 14 O -0.441 6.441 15 C -0.179 4.179 16 C -0.132 4.132 17 C 0.019 3.981 18 H 0.087 0.913 19 C -0.180 4.180 20 C -0.103 4.103 21 C -0.196 4.196 22 C -0.194 4.194 23 C -0.022 4.022 24 O -0.290 6.290 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.228 0.772 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.718 -0.136 -24.492 24.643 hybrid contribution -0.301 0.250 0.181 0.431 sum 2.417 0.114 -24.311 24.431 Atomic orbital electron populations 1.22442 0.99399 1.00810 0.99227 1.19078 0.90104 0.94652 0.83006 0.93483 1.21069 1.33215 1.14289 0.88612 0.90228 1.24838 0.95500 0.96751 0.95531 1.69871 1.45078 1.40137 0.98023 0.86866 0.80503 0.83665 0.77402 1.20308 1.22185 1.18650 1.46211 1.65211 1.13837 1.09909 1.20595 0.78265 0.87478 0.84902 1.90633 1.51717 1.16332 1.85419 1.21631 1.03016 0.99864 0.93425 1.21351 1.03429 0.97299 0.91156 1.23223 0.92040 0.88595 0.94210 0.91262 1.23327 1.03247 0.98105 0.93274 1.21986 0.96354 0.95763 0.96206 1.21875 0.95122 1.01628 1.00950 1.21836 0.99553 1.00497 0.97511 1.23278 0.99934 0.96055 0.82972 1.88911 1.53624 1.62613 1.23832 0.94575 0.92852 0.93544 0.92325 0.77164 0.89468 0.88784 0.90388 0.89859 0.90097 0.90114 0.92389 0.92239 0.92332 0.92134 0.92348 0.92477 0.92491 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 8.97 37.16 0.33 -3.38 16 2 C 0.24 5.77 2.15 -69.08 -0.15 5.63 16 3 H 0.05 1.27 6.61 -51.93 -0.34 0.93 16 4 C -0.53 -14.73 9.31 -34.44 -0.32 -15.05 16 5 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 8 Si 0.89 22.18 24.39 -169.99 -4.15 18.03 16 9 H -0.28 -6.70 6.87 56.52 0.39 -6.31 16 10 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.26 -6.53 6.53 56.52 0.37 -6.16 16 12 N -0.70 -14.40 5.07 -54.94 -0.28 -14.67 16 13 C 0.50 9.66 7.79 -10.99 -0.09 9.57 16 14 O -0.56 -12.82 15.64 5.56 0.09 -12.73 16 15 C -0.14 -1.95 5.63 -27.88 -0.16 -2.11 16 16 C -0.09 -1.23 4.27 -26.72 -0.11 -1.34 16 17 C 0.08 0.82 3.30 -25.67 -0.08 0.74 16 18 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 19 C -0.14 -1.27 5.71 -24.63 -0.14 -1.41 16 20 C -0.10 -0.79 0.99 -152.89 -0.15 -0.95 16 21 C -0.14 -0.89 8.25 37.16 0.31 -0.58 16 22 C -0.14 -0.93 8.28 37.15 0.31 -0.62 16 23 C 0.05 0.49 7.03 37.73 0.27 0.76 16 24 O -0.37 -4.48 10.98 -35.23 -0.39 -4.86 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.05 1.10 3.31 -51.93 -0.17 0.93 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.40 7.12 8.54 -40.82 -0.35 6.77 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.09 1.25 7.99 -51.93 -0.41 0.84 16 32 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 34 H 0.08 0.76 7.79 -51.93 -0.40 0.36 16 35 H 0.08 0.63 7.86 -51.93 -0.41 0.22 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.35 8.14 -51.94 -0.42 -0.07 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.47 7.69 -51.93 -0.40 0.07 16 43 H 0.08 0.68 7.70 -51.93 -0.40 0.28 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -32.22 339.07 -6.49 -38.71 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.56 Total: 3.12 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -0.09 Total: -6.64 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.50 Total: -40.74 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.30 Total: -17.60 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.15 Total: 18.03 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.22 -6.49 -38.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878535387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.884 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds