Wall clock time and date at job start Mon Mar 30 2020 00:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31514 * 120.00481 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99745 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47209 * 90.00365 * 8 6 4 10 10 H 1.48506 * 109.47294 * 210.00213 * 8 6 4 11 11 H 1.48501 * 109.47275 * 330.00116 * 8 6 4 12 12 N 1.46493 * 109.47438 * 239.99415 * 2 1 3 13 13 C 1.34781 * 120.00043 * 84.99885 * 12 2 1 14 14 O 1.21282 * 119.99938 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00076 * 180.02562 * 13 12 2 16 16 C 1.53008 * 109.46799 * 180.02562 * 15 13 12 17 17 C 1.53008 * 109.46693 * 180.02562 * 16 15 13 18 18 H 1.09002 * 110.54839 * 305.69564 * 17 16 15 19 19 C 1.54998 * 110.61512 * 182.81986 * 17 16 15 20 20 C 1.54981 * 102.01222 * 204.59358 * 19 17 16 21 21 C 1.53001 * 110.33996 * 262.02716 * 20 19 17 22 22 C 1.52991 * 110.68442 * 139.47787 * 20 19 17 23 23 C 1.54101 * 104.25104 * 20.66483 * 20 19 17 24 24 O 1.43739 * 107.29466 * 2.16798 * 23 20 19 25 25 H 1.09002 * 109.46792 * 60.00409 * 1 2 3 26 26 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 0.97001 * 120.00269 * 265.01038 * 12 2 1 30 30 H 1.08996 * 109.47163 * 300.00170 * 15 13 12 31 31 H 1.08993 * 109.47201 * 60.00387 * 15 13 12 32 32 H 1.09001 * 109.46723 * 299.99493 * 16 15 13 33 33 H 1.08993 * 109.47281 * 60.00004 * 16 15 13 34 34 H 1.08993 * 110.90866 * 322.67559 * 19 17 16 35 35 H 1.09002 * 110.90426 * 86.27454 * 19 17 16 36 36 H 1.09002 * 109.47062 * 176.20843 * 21 20 19 37 37 H 1.08989 * 109.47222 * 296.21394 * 21 20 19 38 38 H 1.08998 * 109.47267 * 56.22036 * 21 20 19 39 39 H 1.08996 * 109.47618 * 303.58196 * 22 20 19 40 40 H 1.09000 * 109.47420 * 63.58812 * 22 20 19 41 41 H 1.09005 * 109.47318 * 183.58704 * 22 20 19 42 42 H 1.08998 * 109.88177 * 242.74174 * 23 20 19 43 43 H 1.09004 * 110.00012 * 121.66317 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 2.1425 -0.8556 3.5567 8 14 0.6368 1.2877 2.6540 9 1 -0.7926 0.8881 2.7031 10 1 0.9937 2.0040 3.9050 11 1 0.8610 2.1824 1.4902 12 7 2.0184 -0.6907 -1.1960 13 6 2.1471 -0.0184 -2.3571 14 8 1.8591 1.1584 -2.4116 15 6 2.6490 -0.7291 -3.5876 16 6 2.7011 0.2542 -4.7587 17 6 3.2101 -0.4675 -6.0082 18 1 4.1646 -0.9538 -5.8070 19 6 3.3407 0.5215 -7.1945 20 6 3.2195 -0.4234 -8.4170 21 6 4.6072 -0.7755 -8.9566 22 6 2.3669 0.2181 -9.5134 23 6 2.5235 -1.6795 -7.8580 24 8 2.2375 -1.4285 -6.4719 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.9118 -0.5216 4.4376 29 1 2.2490 -1.6319 -1.1524 30 1 3.6480 -1.1216 -3.3984 31 1 1.9761 -1.5508 -3.8324 32 1 1.7021 0.6470 -4.9480 33 1 3.3742 1.0757 -4.5137 34 1 2.5296 1.2495 -7.1851 35 1 4.3096 1.0205 -7.1799 36 1 4.5088 -1.4922 -9.7720 37 1 5.0942 0.1278 -9.3237 38 1 5.2070 -1.2132 -8.1587 39 1 1.3898 0.4800 -9.1075 40 1 2.8616 1.1181 -9.8786 41 1 2.2417 -0.4867 -10.3355 42 1 3.1844 -2.5414 -7.9499 43 1 1.5961 -1.8643 -8.4002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878535387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:29 Heat of formation + Delta-G solvation = -128.762821 kcal Electronic energy + Delta-G solvation = -20802.606667 eV Core-core repulsion = 17653.007934 eV Total energy + Delta-G solvation = -3149.598733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.03093 -40.45839 -36.92614 -35.69229 -34.45964 -34.33611 -31.91661 -29.96386 -28.22058 -27.24563 -26.88256 -25.57224 -22.91285 -21.85654 -21.17020 -20.19037 -19.05175 -17.71158 -17.43977 -17.35367 -16.49587 -16.26826 -15.95657 -15.81810 -14.99850 -14.92141 -14.53423 -14.50323 -14.31654 -14.15588 -13.91940 -13.78350 -13.50553 -13.13048 -12.96202 -12.78664 -12.64482 -12.37884 -12.19220 -12.15358 -12.01958 -11.63276 -11.57972 -11.53741 -11.36835 -11.28274 -10.88421 -10.66324 -10.50757 -9.85394 -8.39077 -6.44926 1.26554 1.34420 1.44398 1.80331 2.25495 2.50176 2.95467 2.96996 3.48607 3.72021 3.90258 3.91139 4.00901 4.15686 4.32863 4.36869 4.43059 4.47096 4.53900 4.61461 4.69576 4.74651 4.77239 4.79187 4.81482 4.84162 4.98745 5.00682 5.03830 5.08503 5.14721 5.23904 5.29299 5.32406 5.32944 5.43099 5.44212 5.67240 6.04038 6.13873 6.56876 6.90245 7.18803 7.48440 8.76273 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.048709 B = 0.003146 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.703305 B = 8897.969668 C = 9060.932035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.240 3.760 3 H 0.021 0.979 4 C -0.534 4.534 5 H 0.057 0.943 6 C 0.029 3.971 7 N -0.934 5.934 8 Si 0.939 3.061 9 H -0.260 1.260 10 H -0.291 1.291 11 H -0.264 1.264 12 N -0.704 5.704 13 C 0.499 3.501 14 O -0.599 6.599 15 C -0.126 4.126 16 C -0.091 4.091 17 C 0.080 3.920 18 H 0.084 0.916 19 C -0.142 4.142 20 C -0.099 4.099 21 C -0.136 4.136 22 C -0.136 4.136 23 C 0.048 3.952 24 O -0.396 6.396 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.271 0.729 29 H 0.407 0.593 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.171 -1.008 -26.753 26.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.135 3.865 3 H 0.039 0.961 4 C -0.572 4.572 5 H 0.075 0.925 6 C -0.171 4.171 7 N -0.573 5.573 8 Si 0.767 3.233 9 H -0.185 1.185 10 H -0.218 1.218 11 H -0.188 1.188 12 N -0.353 5.353 13 C 0.288 3.712 14 O -0.481 6.481 15 C -0.165 4.165 16 C -0.129 4.129 17 C 0.023 3.977 18 H 0.102 0.898 19 C -0.180 4.180 20 C -0.099 4.099 21 C -0.193 4.193 22 C -0.193 4.193 23 C -0.028 4.028 24 O -0.316 6.316 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.243 0.757 30 H 0.132 0.868 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.804 -0.299 -26.459 26.609 hybrid contribution -0.280 0.246 0.745 0.833 sum 2.524 -0.053 -25.714 25.838 Atomic orbital electron populations 1.22343 0.97996 1.01628 0.99347 1.18748 0.91134 0.93172 0.83469 0.96082 1.21280 1.32423 1.13515 0.89970 0.92474 1.25563 0.96810 0.99403 0.95343 1.69973 1.46743 1.41908 0.98655 0.85996 0.79783 0.80355 0.77213 1.18529 1.21786 1.18837 1.46099 1.65487 1.14426 1.09314 1.21478 0.77039 0.87109 0.85614 1.90615 1.53183 1.18229 1.86038 1.21626 1.04338 0.99749 0.90827 1.21300 1.02363 0.97248 0.91981 1.23192 0.92070 0.88870 0.93607 0.89841 1.23334 1.03580 0.97862 0.93196 1.21977 0.97249 0.94791 0.95874 1.21864 0.94074 1.02215 1.01187 1.21830 0.98902 1.01038 0.97520 1.23465 1.00620 0.97037 0.81728 1.88872 1.54328 1.62899 1.25490 0.93739 0.91682 0.94068 0.92011 0.75722 0.86849 0.87500 0.92416 0.90220 0.91092 0.88843 0.91440 0.91577 0.92419 0.93159 0.91715 0.91340 0.91502 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.97 8.97 71.98 0.65 -6.32 16 2 C 0.24 11.70 2.15 44.25 0.10 11.79 16 3 H 0.02 1.15 6.61 -2.39 -0.02 1.14 16 4 C -0.53 -29.63 9.31 25.60 0.24 -29.39 16 5 H 0.06 3.36 7.98 -2.91 -0.02 3.33 16 6 C 0.03 1.63 5.45 84.65 0.46 2.09 16 7 N -0.93 -56.55 13.96 21.45 0.30 -56.25 16 8 Si 0.94 45.46 24.39 68.60 1.67 47.13 16 9 H -0.26 -11.81 6.87 99.48 0.68 -11.13 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 11 H -0.26 -12.75 6.53 99.48 0.65 -12.10 16 12 N -0.70 -28.30 5.07 -446.10 -2.26 -30.56 16 13 C 0.50 18.80 7.79 87.66 0.68 19.48 16 14 O -0.60 -27.27 15.64 -3.04 -0.05 -27.32 16 15 C -0.13 -3.31 5.63 29.85 0.17 -3.14 16 16 C -0.09 -2.27 4.27 30.60 0.13 -2.14 16 17 C 0.08 1.57 3.30 31.28 0.10 1.67 16 18 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 19 C -0.14 -2.30 5.71 31.96 0.18 -2.12 16 20 C -0.10 -1.32 0.99 -51.13 -0.05 -1.37 16 21 C -0.14 -1.38 8.25 71.98 0.59 -0.78 16 22 C -0.14 -1.59 8.28 71.98 0.60 -0.99 16 23 C 0.05 0.78 7.03 72.35 0.51 1.29 16 24 O -0.40 -8.93 10.98 -148.98 -1.64 -10.56 16 25 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.04 1.88 3.31 -2.38 -0.01 1.87 16 28 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.41 14.28 8.54 -92.71 -0.79 13.49 16 30 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.11 2.61 7.99 -2.39 -0.02 2.59 16 32 H 0.06 1.66 8.10 -2.39 -0.02 1.65 16 33 H 0.08 2.03 8.10 -2.39 -0.02 2.01 16 34 H 0.07 1.28 7.79 -2.39 -0.02 1.27 16 35 H 0.09 1.26 7.86 -2.39 -0.02 1.24 16 36 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.07 0.94 7.69 -2.39 -0.02 0.92 16 43 H 0.09 1.28 7.70 -2.38 -0.02 1.26 16 Total: -1.00 -68.91 339.07 2.49 -66.42 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.10 Total: 21.07 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 4.36 Total: -9.93 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -1.96 Total: -86.81 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.68 Total: -37.88 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.67 Total: 47.13 kcal Total: -68.91 2.49 -66.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878535387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.341 kcal (2) G-P(sol) polarization free energy of solvation -68.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds