Wall clock time and date at job start Mon Mar 30 2020 00:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46895 * 109.47363 * 120.00320 * 2 1 3 13 13 C 1.46904 * 110.99921 * 275.00164 * 12 2 1 14 14 C 1.52997 * 109.47454 * 179.97438 * 13 12 2 15 15 H 1.09001 * 110.31882 * 305.70450 * 14 13 12 16 16 C 1.54509 * 110.35798 * 183.49114 * 14 13 12 17 17 C 1.54620 * 104.06157 * 217.33951 * 16 14 13 18 18 C 1.53958 * 103.91866 * 0.36160 * 17 16 14 19 19 C 1.52579 * 110.17263 * 264.40238 * 18 17 16 20 20 C 1.53197 * 109.20927 * 182.48967 * 19 18 17 21 21 O 1.42911 * 109.33864 * 56.66437 * 20 19 18 22 22 C 1.42915 * 114.21818 * 298.38578 * 21 20 19 23 23 C 1.52578 * 110.18336 * 142.36529 * 18 17 16 24 24 O 1.43943 * 105.55729 * 23.30834 * 18 17 16 25 25 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 26 26 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 27 27 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 28 28 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 29 29 H 1.00904 * 110.99768 * 38.94701 * 12 2 1 30 30 H 1.08995 * 109.46935 * 299.99942 * 13 12 2 31 31 H 1.09003 * 109.47136 * 59.99718 * 13 12 2 32 32 H 1.09004 * 110.51251 * 335.98355 * 16 14 13 33 33 H 1.09000 * 110.51077 * 98.55763 * 16 14 13 34 34 H 1.08998 * 110.54010 * 118.96738 * 17 16 14 35 35 H 1.08996 * 110.53992 * 241.75357 * 17 16 14 36 36 H 1.08998 * 109.51254 * 302.41063 * 19 18 17 37 37 H 1.09000 * 109.51523 * 62.56679 * 19 18 17 38 38 H 1.09000 * 109.49096 * 296.70817 * 20 19 18 39 39 H 1.08992 * 109.49668 * 176.62564 * 20 19 18 40 40 H 1.08994 * 109.49781 * 301.66445 * 22 21 20 41 41 H 1.08997 * 109.51601 * 181.59221 * 22 21 20 42 42 H 1.09004 * 109.51264 * 297.42523 * 23 18 17 43 43 H 1.08997 * 109.51632 * 57.58965 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5951 -0.5332 3.5744 15 1 1.9858 -1.4187 3.7554 16 6 2.5865 0.3879 4.8150 17 6 3.8620 -0.0149 5.5907 18 6 4.4897 -1.1207 4.7227 19 6 4.0640 -2.4946 5.2318 20 6 4.7493 -3.5777 4.3927 21 8 6.1653 -3.3925 4.4461 22 6 6.6138 -2.1442 3.9140 23 6 6.0105 -0.9980 4.7324 24 8 3.9802 -0.9044 3.3939 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7011 1.1560 -3.4844 29 1 1.4495 -1.4979 1.4099 30 1 2.7588 1.0461 2.1182 31 1 1.0871 0.6162 2.5525 32 1 2.6370 1.4343 4.5141 33 1 1.6970 0.2075 5.4185 34 1 4.5403 0.8338 5.6782 35 1 3.6038 -0.4026 6.5761 36 1 4.3573 -2.6029 6.2760 37 1 2.9822 -2.5962 5.1444 38 1 4.4117 -3.5048 3.3589 39 1 4.4958 -4.5605 4.7901 40 1 6.2956 -2.0561 2.8753 41 1 7.7014 -2.0955 3.9667 42 1 6.3016 -0.0441 4.2926 43 1 6.3737 -1.0528 5.7586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878820061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:03 Heat of formation + Delta-G solvation = -100.620154 kcal Electronic energy + Delta-G solvation = -21817.844469 eV Core-core repulsion = 18669.466093 eV Total energy + Delta-G solvation = -3148.378375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.54665 -37.91476 -35.89409 -33.16197 -32.33450 -31.69506 -31.15473 -29.19394 -26.69427 -25.10595 -23.93854 -23.79917 -21.85416 -20.80407 -20.11324 -19.63616 -16.55087 -16.29527 -16.09469 -15.95837 -15.20893 -15.04204 -14.67774 -14.60968 -14.01522 -13.84586 -13.20609 -13.10643 -12.58444 -12.38095 -12.35488 -11.86616 -11.77881 -11.66192 -11.45151 -11.32571 -11.19057 -11.04058 -10.81618 -10.74276 -10.52308 -10.36190 -10.24598 -10.10537 -9.74826 -9.50440 -9.34336 -8.95807 -8.31477 -7.14862 -5.94057 -3.96642 3.38165 3.41386 3.45666 3.88626 3.93466 4.47522 4.51159 4.61162 4.68410 4.92011 4.98424 5.00771 5.10724 5.27801 5.37382 5.37639 5.41181 5.54090 5.61551 5.68885 5.70460 5.73898 5.79781 5.83487 5.92343 5.98850 6.00700 6.06936 6.09185 6.28059 6.46165 6.70154 6.85151 7.11515 7.16265 7.23481 7.41515 7.76416 7.93492 8.32001 8.59045 8.67148 9.10599 9.68395 11.13084 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.004715 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.911109 B = 5937.609629 C = 6738.789778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.032 0.968 4 C -0.492 4.492 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.676 5.676 13 C 0.067 3.933 14 C 0.081 3.919 15 H 0.062 0.938 16 C -0.151 4.151 17 C -0.142 4.142 18 C 0.095 3.905 19 C -0.166 4.166 20 C 0.064 3.936 21 O -0.388 6.388 22 C 0.061 3.939 23 C -0.139 4.139 24 O -0.332 6.332 25 H 0.003 0.997 26 H 0.089 0.911 27 H 0.027 0.973 28 H 0.259 0.741 29 H 0.322 0.678 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.368 -2.997 17.963 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.305 5.305 13 C -0.063 4.063 14 C 0.023 3.977 15 H 0.080 0.920 16 C -0.189 4.189 17 C -0.179 4.179 18 C 0.055 3.945 19 C -0.204 4.204 20 C -0.013 4.013 21 O -0.307 6.307 22 C -0.015 4.015 23 C -0.176 4.176 24 O -0.251 6.251 25 H 0.022 0.978 26 H 0.108 0.892 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.138 0.862 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.203 -2.946 17.505 18.804 hybrid contribution -1.165 0.022 -0.496 1.266 sum 5.038 -2.924 17.009 17.979 Atomic orbital electron populations 1.22443 1.00848 0.99140 1.00420 1.19168 0.89408 0.94413 0.86643 0.94980 1.21136 1.29909 1.12441 0.89586 0.91989 1.24951 0.95382 0.95253 0.99019 1.69876 1.37435 1.23323 1.23351 0.86567 0.79201 0.79603 0.82034 1.20398 1.21503 1.20289 1.60752 1.57936 1.08673 1.03169 1.21957 0.98075 0.96071 0.90224 1.23066 0.84192 0.95910 0.94522 0.92050 1.22989 0.97854 1.01248 0.96831 1.22902 0.97288 0.98768 0.98972 1.21882 0.94327 0.93586 0.84714 1.22545 1.01546 0.95807 1.00495 1.22523 0.80805 0.97790 1.00202 1.87852 1.22220 1.37076 1.83531 1.22573 0.98761 0.82773 0.97434 1.22103 0.93377 1.00560 1.01581 1.89318 1.23610 1.88851 1.23348 0.97765 0.89235 0.95376 0.93096 0.86159 0.91009 0.95221 0.90499 0.90904 0.90692 0.90856 0.90749 0.90591 0.91818 0.89311 0.91751 0.89186 0.90026 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.94 37.16 0.33 -3.77 16 2 C 0.21 5.41 2.58 -68.87 -0.18 5.23 16 3 H 0.03 0.91 7.80 -51.93 -0.40 0.50 16 4 C -0.49 -13.93 8.84 -34.44 -0.30 -14.24 16 5 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.10 11.31 55.43 0.63 -25.48 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.68 -14.69 6.23 -107.95 -0.67 -15.36 16 13 C 0.07 1.21 5.09 -3.82 -0.02 1.19 16 14 C 0.08 1.20 3.05 -25.94 -0.08 1.12 16 15 H 0.06 0.87 7.24 -51.93 -0.38 0.50 16 16 C -0.15 -1.75 6.64 -25.09 -0.17 -1.91 16 17 C -0.14 -1.48 6.17 -25.38 -0.16 -1.64 16 18 C 0.10 1.17 0.69 -90.55 -0.06 1.10 16 19 C -0.17 -1.86 4.87 -26.85 -0.13 -1.99 16 20 C 0.06 0.78 6.74 37.26 0.25 1.04 16 21 O -0.39 -5.26 10.75 -35.23 -0.38 -5.64 16 22 C 0.06 0.76 6.74 37.26 0.25 1.01 16 23 C -0.14 -1.57 5.05 -26.84 -0.14 -1.70 16 24 O -0.33 -5.34 10.11 -35.23 -0.36 -5.69 16 25 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 26 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16 27 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.32 6.63 8.47 -39.29 -0.33 6.30 16 30 H 0.07 1.39 8.05 -51.93 -0.42 0.97 16 31 H 0.03 0.52 7.44 -51.93 -0.39 0.13 16 32 H 0.08 0.90 7.87 -51.93 -0.41 0.49 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 35 H 0.07 0.65 7.83 -51.93 -0.41 0.24 16 36 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 37 H 0.08 0.82 6.93 -51.93 -0.36 0.46 16 38 H 0.06 0.90 7.96 -51.93 -0.41 0.49 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.92 7.97 -51.93 -0.41 0.51 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 331.96 15.07 5.00 5.00 Total: -1.00 -30.20 331.96 -8.82 -39.02 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.53 Total: 4.37 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -0.49 Total: -13.13 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: -0.05 Total: -40.84 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.74 Total: -11.33 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.20 -8.82 -39.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878820061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.599 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds