Wall clock time and date at job start Mon Mar 30 2020 00:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46895 * 109.47363 * 120.00320 * 2 1 3 13 13 C 1.46904 * 110.99921 * 275.00164 * 12 2 1 14 14 C 1.52997 * 109.47454 * 179.97438 * 13 12 2 15 15 H 1.09001 * 110.31882 * 305.70450 * 14 13 12 16 16 C 1.54509 * 110.35798 * 183.49114 * 14 13 12 17 17 C 1.54620 * 104.06157 * 217.33951 * 16 14 13 18 18 C 1.53958 * 103.91866 * 0.36160 * 17 16 14 19 19 C 1.52579 * 110.17263 * 264.40238 * 18 17 16 20 20 C 1.53197 * 109.20927 * 182.48967 * 19 18 17 21 21 O 1.42911 * 109.33864 * 56.66437 * 20 19 18 22 22 C 1.42915 * 114.21818 * 298.38578 * 21 20 19 23 23 C 1.52578 * 110.18336 * 142.36529 * 18 17 16 24 24 O 1.43943 * 105.55729 * 23.30834 * 18 17 16 25 25 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 26 26 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 27 27 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 28 28 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 29 29 H 1.00904 * 110.99768 * 38.94701 * 12 2 1 30 30 H 1.08995 * 109.46935 * 299.99942 * 13 12 2 31 31 H 1.09003 * 109.47136 * 59.99718 * 13 12 2 32 32 H 1.09004 * 110.51251 * 335.98355 * 16 14 13 33 33 H 1.09000 * 110.51077 * 98.55763 * 16 14 13 34 34 H 1.08998 * 110.54010 * 118.96738 * 17 16 14 35 35 H 1.08996 * 110.53992 * 241.75357 * 17 16 14 36 36 H 1.08998 * 109.51254 * 302.41063 * 19 18 17 37 37 H 1.09000 * 109.51523 * 62.56679 * 19 18 17 38 38 H 1.09000 * 109.49096 * 296.70817 * 20 19 18 39 39 H 1.08992 * 109.49668 * 176.62564 * 20 19 18 40 40 H 1.08994 * 109.49781 * 301.66445 * 22 21 20 41 41 H 1.08997 * 109.51601 * 181.59221 * 22 21 20 42 42 H 1.09004 * 109.51264 * 297.42523 * 23 18 17 43 43 H 1.08997 * 109.51632 * 57.58965 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5951 -0.5332 3.5744 15 1 1.9858 -1.4187 3.7554 16 6 2.5865 0.3879 4.8150 17 6 3.8620 -0.0149 5.5907 18 6 4.4897 -1.1207 4.7227 19 6 4.0640 -2.4946 5.2318 20 6 4.7493 -3.5777 4.3927 21 8 6.1653 -3.3925 4.4461 22 6 6.6138 -2.1442 3.9140 23 6 6.0105 -0.9980 4.7324 24 8 3.9802 -0.9044 3.3939 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7011 1.1560 -3.4844 29 1 1.4495 -1.4979 1.4099 30 1 2.7588 1.0461 2.1182 31 1 1.0871 0.6162 2.5525 32 1 2.6370 1.4343 4.5141 33 1 1.6970 0.2075 5.4185 34 1 4.5403 0.8338 5.6782 35 1 3.6038 -0.4026 6.5761 36 1 4.3573 -2.6029 6.2760 37 1 2.9822 -2.5962 5.1444 38 1 4.4117 -3.5048 3.3589 39 1 4.4958 -4.5605 4.7901 40 1 6.2956 -2.0561 2.8753 41 1 7.7014 -2.0955 3.9667 42 1 6.3016 -0.0441 4.2926 43 1 6.3737 -1.0528 5.7586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878820061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:02 Heat of formation + Delta-G solvation = -121.302983 kcal Electronic energy + Delta-G solvation = -21818.741343 eV Core-core repulsion = 18669.466093 eV Total energy + Delta-G solvation = -3149.275250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.54050 -39.00501 -37.65152 -34.80810 -33.61394 -32.94595 -32.08662 -30.79333 -28.08015 -27.23050 -25.19177 -24.72981 -22.97792 -22.19391 -21.77951 -20.61337 -18.42032 -17.44856 -17.18311 -16.98774 -16.74713 -16.50821 -16.04837 -15.59431 -15.43739 -15.06654 -14.71041 -14.65401 -13.86424 -13.74372 -13.49157 -13.25482 -13.07056 -12.94040 -12.79024 -12.73749 -12.58841 -12.49699 -12.29755 -12.18391 -12.16165 -12.02394 -11.57806 -11.41485 -11.20895 -11.00791 -10.55149 -10.48776 -10.34238 -8.91695 -8.10344 -6.21303 1.41629 1.43762 1.51613 2.43415 2.89325 2.96803 3.17480 3.51092 3.59922 3.76384 3.81685 4.02724 4.07532 4.12070 4.29524 4.35743 4.39696 4.41957 4.53197 4.67007 4.72113 4.73122 4.77888 4.78854 4.85271 4.88635 4.94007 4.97933 5.04917 5.08081 5.09635 5.19067 5.23111 5.30828 5.41456 5.68498 5.80733 6.14661 6.25175 6.27846 6.65204 6.84040 6.94184 7.48537 8.94944 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.004715 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.911109 B = 5937.609629 C = 6738.789778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H -0.002 1.002 4 C -0.516 4.516 5 H 0.050 0.950 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.277 1.277 12 N -0.684 5.684 13 C 0.069 3.931 14 C 0.084 3.916 15 H 0.069 0.931 16 C -0.145 4.145 17 C -0.134 4.134 18 C 0.085 3.915 19 C -0.160 4.160 20 C 0.060 3.940 21 O -0.399 6.399 22 C 0.059 3.941 23 C -0.136 4.136 24 O -0.368 6.368 25 H 0.027 0.973 26 H 0.062 0.938 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.329 0.671 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.108 0.892 40 H 0.033 0.967 41 H 0.110 0.890 42 H 0.079 0.921 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.456 -3.561 19.916 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.108 3.892 3 H 0.016 0.984 4 C -0.555 4.555 5 H 0.068 0.932 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.202 1.202 12 N -0.314 5.314 13 C -0.061 4.061 14 C 0.026 3.974 15 H 0.086 0.914 16 C -0.183 4.183 17 C -0.171 4.171 18 C 0.045 3.955 19 C -0.198 4.198 20 C -0.017 4.017 21 O -0.318 6.318 22 C -0.018 4.018 23 C -0.173 4.173 24 O -0.288 6.288 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.146 0.854 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.126 0.874 40 H 0.051 0.949 41 H 0.128 0.872 42 H 0.097 0.903 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.291 -3.513 19.480 20.770 hybrid contribution -1.156 0.200 -1.093 1.604 sum 5.135 -3.312 18.387 19.375 Atomic orbital electron populations 1.22227 0.99733 0.99295 1.00182 1.18923 0.90145 0.92479 0.87683 0.98436 1.21419 1.30309 1.12484 0.91245 0.93183 1.25708 0.95442 0.95926 1.01820 1.69998 1.37970 1.24248 1.24040 0.85588 0.78524 0.78778 0.78559 1.19578 1.20672 1.20203 1.60593 1.57875 1.09394 1.03503 1.21976 0.98322 0.95382 0.90374 1.23004 0.83961 0.96469 0.93979 0.91363 1.22967 0.99629 1.00155 0.95589 1.22897 0.96467 0.98312 0.99452 1.22164 0.94851 0.94941 0.83535 1.22520 1.01609 0.94465 1.01194 1.22604 0.80465 0.99553 0.99067 1.87834 1.22887 1.37646 1.83422 1.22624 1.00004 0.83146 0.95994 1.22120 0.92934 0.99702 1.02586 1.89294 1.24162 1.89180 1.26129 0.95393 0.91947 0.94871 0.92964 0.85373 0.93113 0.94229 0.90905 0.88596 0.90035 0.88298 0.88552 0.90145 0.94715 0.87370 0.94852 0.87243 0.90286 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.55 8.94 71.98 0.64 -6.91 16 2 C 0.22 11.36 2.58 44.17 0.11 11.47 16 3 H 0.00 -0.14 7.80 -2.38 -0.02 -0.15 16 4 C -0.52 -29.88 8.84 25.60 0.23 -29.65 16 5 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 6 C 0.01 0.52 5.30 84.66 0.45 0.97 16 7 N -0.92 -54.29 11.31 21.45 0.24 -54.05 16 8 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 N -0.68 -30.26 6.23 -495.45 -3.09 -33.34 16 13 C 0.07 2.51 5.09 86.30 0.44 2.94 16 14 C 0.08 2.38 3.05 31.11 0.09 2.48 16 15 H 0.07 1.83 7.24 -2.39 -0.02 1.82 16 16 C -0.15 -3.00 6.64 31.66 0.21 -2.79 16 17 C -0.13 -2.37 6.17 31.47 0.19 -2.17 16 18 C 0.08 1.91 0.69 -10.75 -0.01 1.91 16 19 C -0.16 -3.20 4.87 30.52 0.15 -3.05 16 20 C 0.06 1.42 6.74 72.05 0.49 1.90 16 21 O -0.40 -10.45 10.75 -148.98 -1.60 -12.05 16 22 C 0.06 1.43 6.74 72.05 0.49 1.92 16 23 C -0.14 -2.85 5.05 30.52 0.15 -2.70 16 24 O -0.37 -11.74 10.11 -148.98 -1.51 -13.25 16 25 H 0.03 1.18 7.45 -2.39 -0.02 1.16 16 26 H 0.06 3.40 6.06 -2.39 -0.01 3.38 16 27 H 0.03 1.53 8.13 -2.38 -0.02 1.51 16 28 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 29 H 0.33 13.63 8.47 -89.69 -0.76 12.87 16 30 H 0.05 2.03 8.05 -2.39 -0.02 2.01 16 31 H 0.04 1.35 7.44 -2.39 -0.02 1.33 16 32 H 0.07 1.57 7.87 -2.39 -0.02 1.55 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.35 7.85 -2.39 -0.02 1.33 16 35 H 0.10 1.28 7.83 -2.39 -0.02 1.26 16 36 H 0.10 1.53 8.13 -2.39 -0.02 1.51 16 37 H 0.08 1.54 6.93 -2.39 -0.02 1.52 16 38 H 0.03 1.01 7.96 -2.39 -0.02 0.99 16 39 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.03 1.00 7.97 -2.39 -0.02 0.98 16 41 H 0.11 2.15 8.14 -2.39 -0.02 2.14 16 42 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -66.12 331.96 -0.07 -66.19 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.22 Total: 22.84 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 3.64 Total: -23.68 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -2.84 Total: -87.39 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -3.11 Total: -25.30 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -66.12 -0.07 -66.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878820061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.111 kcal (2) G-P(sol) polarization free energy of solvation -66.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds