Wall clock time and date at job start Mon Mar 30 2020 00:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46835 * 2 1 4 4 C 1.50698 * 109.47253 * 120.00444 * 2 1 3 5 5 H 1.07993 * 120.00432 * 120.00497 * 4 2 1 6 6 C 1.37879 * 119.99561 * 299.99873 * 4 2 1 7 7 N 1.31515 * 120.00323 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99954 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47571 * 89.99755 * 8 6 4 10 10 H 1.48498 * 109.47189 * 210.00066 * 8 6 4 11 11 H 1.48503 * 109.47009 * 329.99693 * 8 6 4 12 12 N 1.46902 * 109.47385 * 240.00330 * 2 1 3 13 13 C 1.46904 * 110.99986 * 84.99560 * 12 2 1 14 14 C 1.52995 * 109.47076 * 180.02562 * 13 12 2 15 15 H 1.09006 * 110.54508 * 61.40166 * 14 13 12 16 16 C 1.55258 * 110.77345 * 184.24311 * 14 13 12 17 17 C 1.54879 * 101.99504 * 155.34360 * 16 14 13 18 18 C 1.53834 * 104.19266 * 339.28970 * 17 16 14 19 19 C 1.52877 * 109.76304 * 238.39902 * 18 17 16 20 20 C 1.53160 * 109.15725 * 183.05928 * 19 18 17 21 21 O 1.42900 * 109.37840 * 57.05847 * 20 19 18 22 22 C 1.42909 * 114.18223 * 298.55892 * 21 20 19 23 23 C 1.52889 * 109.74966 * 117.59452 * 18 17 16 24 24 O 1.43448 * 107.61194 * 358.00781 * 18 17 16 25 25 H 1.08998 * 109.47282 * 300.00020 * 1 2 3 26 26 H 1.08998 * 109.47240 * 60.00078 * 1 2 3 27 27 H 1.09000 * 109.47313 * 179.97438 * 1 2 3 28 28 H 0.96996 * 119.99980 * 180.02562 * 7 6 4 29 29 H 1.00903 * 110.99933 * 321.04794 * 12 2 1 30 30 H 1.08992 * 109.46975 * 60.00432 * 13 12 2 31 31 H 1.09004 * 109.47512 * 300.00281 * 13 12 2 32 32 H 1.09003 * 110.88459 * 37.21207 * 16 14 13 33 33 H 1.08998 * 111.02373 * 273.54299 * 16 14 13 34 34 H 1.09002 * 110.51115 * 220.57192 * 17 16 14 35 35 H 1.09004 * 110.50869 * 98.00420 * 17 16 14 36 36 H 1.09000 * 109.52937 * 302.96393 * 19 18 17 37 37 H 1.08998 * 109.52244 * 63.15836 * 19 18 17 38 38 H 1.08997 * 109.49013 * 297.08493 * 20 19 18 39 39 H 1.09001 * 109.48462 * 177.02364 * 20 19 18 40 40 H 1.09004 * 109.48769 * 301.47788 * 22 21 20 41 41 H 1.09005 * 109.50701 * 181.43221 * 22 21 20 42 42 H 1.09007 * 109.51879 * 296.86559 * 23 18 17 43 43 H 1.09003 * 109.52114 * 57.05118 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6304 -0.5442 4.4118 10 1 1.3444 -0.9491 5.1122 11 1 2.4879 -2.5655 3.7121 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5950 -0.5329 -3.5745 15 1 1.9171 -1.3462 -3.8337 16 6 2.7745 0.4303 -4.7788 17 6 3.8402 -0.3083 -5.6258 18 6 4.5213 -1.2607 -4.6280 19 6 6.0197 -0.9634 -4.5701 20 6 6.6955 -1.9678 -3.6318 21 8 6.4288 -3.2958 -4.0873 22 6 5.0425 -3.6422 -4.1023 23 6 4.2961 -2.7097 -5.0608 24 8 3.9283 -1.0374 -3.3410 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7087 1.1611 3.4844 29 1 1.4496 -1.4978 -1.4101 30 1 2.7587 1.0463 -2.1182 31 1 1.0870 0.6165 -2.5526 32 1 3.1446 1.4009 -4.4483 33 1 1.8431 0.5394 -5.3345 34 1 4.5627 0.3994 -6.0323 35 1 3.3659 -0.8722 -6.4291 36 1 6.4478 -1.0527 -5.5685 37 1 6.1762 0.0479 -4.1948 38 1 6.3028 -1.8438 -2.6226 39 1 7.7716 -1.7942 -3.6274 40 1 4.6306 -3.5373 -3.0985 41 1 4.9286 -4.6736 -4.4360 42 1 3.2303 -2.9365 -5.0337 43 1 4.6738 -2.8501 -6.0736 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878820062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:04 Heat of formation + Delta-G solvation = -121.399432 kcal Electronic energy + Delta-G solvation = -21827.387171 eV Core-core repulsion = 18678.107739 eV Total energy + Delta-G solvation = -3149.279433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.45485 -39.00335 -37.63874 -34.80836 -33.63126 -32.91883 -32.08409 -30.78622 -27.99958 -27.22745 -25.19107 -24.71005 -22.83135 -22.21535 -21.87759 -20.61135 -18.41445 -17.49261 -17.28269 -16.94749 -16.75142 -16.39555 -16.04154 -15.48259 -15.39422 -15.02691 -14.76451 -14.56275 -14.03812 -13.70581 -13.44087 -13.23181 -13.06572 -12.93928 -12.80192 -12.73620 -12.56610 -12.42032 -12.33223 -12.18810 -12.15969 -12.06584 -11.56703 -11.42629 -11.19466 -10.98895 -10.49600 -10.45573 -10.34394 -8.89945 -8.10365 -6.21099 1.41371 1.42082 1.53156 2.43372 2.87451 2.97747 3.17590 3.51792 3.62432 3.73507 3.82522 4.06810 4.08929 4.10261 4.30688 4.37013 4.41232 4.44310 4.54281 4.67538 4.72856 4.73279 4.78074 4.79578 4.86179 4.89027 4.92929 4.99722 5.04936 5.08782 5.10577 5.20775 5.22173 5.33862 5.41917 5.68946 5.81236 6.21456 6.26338 6.29295 6.66087 6.85160 6.94971 7.48855 8.95146 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021128 B = 0.004829 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.910953 B = 5797.232372 C = 6653.278155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H -0.002 1.002 4 C -0.514 4.514 5 H 0.049 0.951 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.279 1.279 10 H -0.280 1.280 11 H -0.271 1.271 12 N -0.682 5.682 13 C 0.070 3.930 14 C 0.084 3.916 15 H 0.069 0.931 16 C -0.144 4.144 17 C -0.135 4.135 18 C 0.086 3.914 19 C -0.139 4.139 20 C 0.059 3.941 21 O -0.400 6.400 22 C 0.059 3.941 23 C -0.157 4.157 24 O -0.367 6.367 25 H 0.061 0.939 26 H 0.027 0.973 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.329 0.671 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.032 0.968 39 H 0.107 0.893 40 H 0.034 0.966 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.657 -3.521 -19.735 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.108 3.892 3 H 0.016 0.984 4 C -0.553 4.553 5 H 0.068 0.932 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.195 1.195 12 N -0.312 5.312 13 C -0.060 4.060 14 C 0.026 3.974 15 H 0.087 0.913 16 C -0.182 4.182 17 C -0.172 4.172 18 C 0.046 3.954 19 C -0.177 4.177 20 C -0.018 4.018 21 O -0.319 6.319 22 C -0.017 4.017 23 C -0.194 4.194 24 O -0.287 6.287 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.146 0.854 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.125 0.875 40 H 0.053 0.947 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.497 -3.489 -19.283 20.645 hybrid contribution -1.159 0.179 1.053 1.576 sum 5.338 -3.309 -18.230 19.282 Atomic orbital electron populations 1.22226 0.99769 0.99271 1.00160 1.18930 0.90121 0.92485 0.87714 0.98393 1.21442 1.30220 1.12357 0.91242 0.93223 1.25701 0.95476 0.95928 1.01806 1.70001 1.38051 1.24277 1.23967 0.85539 0.77980 0.79010 0.78970 1.20450 1.20561 1.19539 1.60581 1.57847 1.09323 1.03425 1.21947 0.98356 0.95345 0.90353 1.23196 0.85222 0.95123 0.93831 0.91307 1.23177 1.00657 0.98819 0.95526 1.22953 0.98181 0.98257 0.97827 1.22112 0.93996 0.94900 0.84374 1.22269 0.93491 1.00095 1.01798 1.22597 1.01034 0.81809 0.96311 1.87828 1.25368 1.31438 1.87241 1.22592 0.81121 0.99380 0.98611 1.22566 1.01622 0.94680 1.00580 1.89079 1.27365 1.85437 1.26795 0.91984 0.95387 0.94900 0.92979 0.85424 0.93054 0.94237 0.90932 0.88371 0.89137 0.88784 0.88230 0.90407 0.94923 0.87453 0.94739 0.87522 0.90287 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.54 8.94 71.98 0.64 -6.90 16 2 C 0.22 11.32 2.57 44.17 0.11 11.44 16 3 H 0.00 -0.11 7.80 -2.38 -0.02 -0.13 16 4 C -0.51 -29.77 8.84 25.60 0.23 -29.54 16 5 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 6 C 0.01 0.50 5.30 84.66 0.45 0.95 16 7 N -0.92 -54.30 11.32 21.45 0.24 -54.06 16 8 Si 0.96 45.39 29.54 68.60 2.03 47.42 16 9 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.68 -30.12 6.16 -495.45 -3.05 -33.17 16 13 C 0.07 2.50 5.26 86.30 0.45 2.96 16 14 C 0.08 2.37 3.47 31.37 0.11 2.48 16 15 H 0.07 1.82 8.09 -2.38 -0.02 1.80 16 16 C -0.14 -2.94 6.62 32.01 0.21 -2.73 16 17 C -0.13 -2.31 6.26 31.52 0.20 -2.11 16 18 C 0.09 1.95 0.72 -10.59 -0.01 1.94 16 19 C -0.14 -2.97 4.92 30.61 0.15 -2.82 16 20 C 0.06 1.49 6.72 72.04 0.48 1.97 16 21 O -0.40 -10.81 10.76 -148.98 -1.60 -12.42 16 22 C 0.06 1.46 6.72 72.03 0.48 1.94 16 23 C -0.16 -3.20 4.87 30.61 0.15 -3.05 16 24 O -0.37 -11.66 9.66 -148.98 -1.44 -13.09 16 25 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 26 H 0.03 1.18 7.45 -2.39 -0.02 1.16 16 27 H 0.03 1.52 8.13 -2.39 -0.02 1.50 16 28 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.33 13.67 8.47 -89.69 -0.76 12.91 16 30 H 0.05 2.02 8.05 -2.39 -0.02 2.00 16 31 H 0.04 1.34 7.44 -2.39 -0.02 1.32 16 32 H 0.07 1.57 8.06 -2.39 -0.02 1.55 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.31 7.69 -2.39 -0.02 1.30 16 35 H 0.09 1.25 7.69 -2.39 -0.02 1.23 16 36 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.03 1.02 7.90 -2.39 -0.02 1.00 16 39 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.03 1.04 7.90 -2.39 -0.02 1.02 16 41 H 0.11 2.13 8.14 -2.38 -0.02 2.12 16 42 H 0.08 1.54 8.07 -2.38 -0.02 1.52 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -66.05 333.74 0.05 -66.00 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.21 Total: 22.78 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 3.66 Total: -23.46 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -2.81 Total: -87.23 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -3.04 Total: -25.51 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -66.05 0.05 -66.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878820062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.400 kcal (2) G-P(sol) polarization free energy of solvation -66.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds