Wall clock time and date at job start Mon Mar 30 2020 00:44:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09005 * 109.46835 * 2 1
4 4 C 1.50698 * 109.47253 * 120.00444 * 2 1 3
5 5 H 1.07993 * 120.00432 * 120.00497 * 4 2 1
6 6 C 1.37879 * 119.99561 * 299.99873 * 4 2 1
7 7 N 1.31515 * 120.00323 * 0.02562 * 6 4 2
8 8 Si 1.86800 * 119.99954 * 180.02562 * 6 4 2
9 9 H 1.48493 * 109.47571 * 89.99755 * 8 6 4
10 10 H 1.48498 * 109.47189 * 210.00066 * 8 6 4
11 11 H 1.48503 * 109.47009 * 329.99693 * 8 6 4
12 12 N 1.46902 * 109.47385 * 240.00330 * 2 1 3
13 13 C 1.46904 * 110.99986 * 84.99560 * 12 2 1
14 14 C 1.52995 * 109.47076 * 180.02562 * 13 12 2
15 15 H 1.09006 * 110.54508 * 61.40166 * 14 13 12
16 16 C 1.55258 * 110.77345 * 184.24311 * 14 13 12
17 17 C 1.54879 * 101.99504 * 155.34360 * 16 14 13
18 18 C 1.53834 * 104.19266 * 339.28970 * 17 16 14
19 19 C 1.52877 * 109.76304 * 238.39902 * 18 17 16
20 20 C 1.53160 * 109.15725 * 183.05928 * 19 18 17
21 21 O 1.42900 * 109.37840 * 57.05847 * 20 19 18
22 22 C 1.42909 * 114.18223 * 298.55892 * 21 20 19
23 23 C 1.52889 * 109.74966 * 117.59452 * 18 17 16
24 24 O 1.43448 * 107.61194 * 358.00781 * 18 17 16
25 25 H 1.08998 * 109.47282 * 300.00020 * 1 2 3
26 26 H 1.08998 * 109.47240 * 60.00078 * 1 2 3
27 27 H 1.09000 * 109.47313 * 179.97438 * 1 2 3
28 28 H 0.96996 * 119.99980 * 180.02562 * 7 6 4
29 29 H 1.00903 * 110.99933 * 321.04794 * 12 2 1
30 30 H 1.08992 * 109.46975 * 60.00432 * 13 12 2
31 31 H 1.09004 * 109.47512 * 300.00281 * 13 12 2
32 32 H 1.09003 * 110.88459 * 37.21207 * 16 14 13
33 33 H 1.08998 * 111.02373 * 273.54299 * 16 14 13
34 34 H 1.09002 * 110.51115 * 220.57192 * 17 16 14
35 35 H 1.09004 * 110.50869 * 98.00420 * 17 16 14
36 36 H 1.09000 * 109.52937 * 302.96393 * 19 18 17
37 37 H 1.08998 * 109.52244 * 63.15836 * 19 18 17
38 38 H 1.08997 * 109.49013 * 297.08493 * 20 19 18
39 39 H 1.09001 * 109.48462 * 177.02364 * 20 19 18
40 40 H 1.09004 * 109.48769 * 301.47788 * 22 21 20
41 41 H 1.09005 * 109.50701 * 181.43221 * 22 21 20
42 42 H 1.09007 * 109.51879 * 296.86559 * 23 18 17
43 43 H 1.09003 * 109.52114 * 57.05118 * 23 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7105 1.2304
5 1 2.6533 -1.5885 1.1313
6 6 1.6992 -0.2394 2.4827
7 7 0.9427 0.8296 2.6034
8 14 2.3225 -1.1196 4.0079
9 1 3.6304 -0.5442 4.4118
10 1 1.3444 -0.9491 5.1122
11 1 2.4879 -2.5655 3.7121
12 7 2.0197 -0.6924 -1.1995
13 6 2.0824 0.2227 -2.3469
14 6 2.5950 -0.5329 -3.5745
15 1 1.9171 -1.3462 -3.8337
16 6 2.7745 0.4303 -4.7788
17 6 3.8402 -0.3083 -5.6258
18 6 4.5213 -1.2607 -4.6280
19 6 6.0197 -0.9634 -4.5701
20 6 6.6955 -1.9678 -3.6318
21 8 6.4288 -3.2958 -4.0873
22 6 5.0425 -3.6422 -4.1023
23 6 4.2961 -2.7097 -5.0608
24 8 3.9283 -1.0374 -3.3410
25 1 -0.3634 0.5138 0.8900
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3634 -1.0277 -0.0005
28 1 0.7087 1.1611 3.4844
29 1 1.4496 -1.4978 -1.4101
30 1 2.7587 1.0463 -2.1182
31 1 1.0870 0.6165 -2.5526
32 1 3.1446 1.4009 -4.4483
33 1 1.8431 0.5394 -5.3345
34 1 4.5627 0.3994 -6.0323
35 1 3.3659 -0.8722 -6.4291
36 1 6.4478 -1.0527 -5.5685
37 1 6.1762 0.0479 -4.1948
38 1 6.3028 -1.8438 -2.6226
39 1 7.7716 -1.7942 -3.6274
40 1 4.6306 -3.5373 -3.0985
41 1 4.9286 -4.6736 -4.4360
42 1 3.2303 -2.9365 -5.0337
43 1 4.6738 -2.8501 -6.0736
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000878820062.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:44:04
Heat of formation + Delta-G solvation = -121.399432 kcal
Electronic energy + Delta-G solvation = -21827.387171 eV
Core-core repulsion = 18678.107739 eV
Total energy + Delta-G solvation = -3149.279433 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.45485 -39.00335 -37.63874 -34.80836 -33.63126 -32.91883 -32.08409 -30.78622
-27.99958 -27.22745 -25.19107 -24.71005 -22.83135 -22.21535 -21.87759 -20.61135
-18.41445 -17.49261 -17.28269 -16.94749 -16.75142 -16.39555 -16.04154 -15.48259
-15.39422 -15.02691 -14.76451 -14.56275 -14.03812 -13.70581 -13.44087 -13.23181
-13.06572 -12.93928 -12.80192 -12.73620 -12.56610 -12.42032 -12.33223 -12.18810
-12.15969 -12.06584 -11.56703 -11.42629 -11.19466 -10.98895 -10.49600 -10.45573
-10.34394 -8.89945 -8.10365 -6.21099 1.41371 1.42082 1.53156 2.43372
2.87451 2.97747 3.17590 3.51792 3.62432 3.73507 3.82522 4.06810
4.08929 4.10261 4.30688 4.37013 4.41232 4.44310 4.54281 4.67538
4.72856 4.73279 4.78074 4.79578 4.86179 4.89027 4.92929 4.99722
5.04936 5.08782 5.10577 5.20775 5.22173 5.33862 5.41917 5.68946
5.81236 6.21456 6.26338 6.29295 6.66087 6.85160 6.94971 7.48855
8.95146
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.021128 B = 0.004829 C = 0.004207
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1324.910953 B = 5797.232372 C = 6653.278155
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.216 3.784
3 H -0.002 1.002
4 C -0.514 4.514
5 H 0.049 0.951
6 C 0.009 3.991
7 N -0.922 5.922
8 Si 0.959 3.041
9 H -0.279 1.279
10 H -0.280 1.280
11 H -0.271 1.271
12 N -0.682 5.682
13 C 0.070 3.930
14 C 0.084 3.916
15 H 0.069 0.931
16 C -0.144 4.144
17 C -0.135 4.135
18 C 0.086 3.914
19 C -0.139 4.139
20 C 0.059 3.941
21 O -0.400 6.400
22 C 0.059 3.941
23 C -0.157 4.157
24 O -0.367 6.367
25 H 0.061 0.939
26 H 0.027 0.973
27 H 0.032 0.968
28 H 0.261 0.739
29 H 0.329 0.671
30 H 0.051 0.949
31 H 0.040 0.960
32 H 0.072 0.928
33 H 0.098 0.902
34 H 0.090 0.910
35 H 0.094 0.906
36 H 0.099 0.901
37 H 0.077 0.923
38 H 0.032 0.968
39 H 0.107 0.893
40 H 0.034 0.966
41 H 0.107 0.893
42 H 0.079 0.921
43 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.657 -3.521 -19.735 20.829
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.108 3.892
3 H 0.016 0.984
4 C -0.553 4.553
5 H 0.068 0.932
6 C -0.189 4.189
7 N -0.563 5.563
8 Si 0.785 3.215
9 H -0.204 1.204
10 H -0.206 1.206
11 H -0.195 1.195
12 N -0.312 5.312
13 C -0.060 4.060
14 C 0.026 3.974
15 H 0.087 0.913
16 C -0.182 4.182
17 C -0.172 4.172
18 C 0.046 3.954
19 C -0.177 4.177
20 C -0.018 4.018
21 O -0.319 6.319
22 C -0.017 4.017
23 C -0.194 4.194
24 O -0.287 6.287
25 H 0.080 0.920
26 H 0.046 0.954
27 H 0.051 0.949
28 H 0.070 0.930
29 H 0.146 0.854
30 H 0.069 0.931
31 H 0.058 0.942
32 H 0.091 0.909
33 H 0.116 0.884
34 H 0.109 0.891
35 H 0.112 0.888
36 H 0.118 0.882
37 H 0.096 0.904
38 H 0.051 0.949
39 H 0.125 0.875
40 H 0.053 0.947
41 H 0.125 0.875
42 H 0.097 0.903
43 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges 6.497 -3.489 -19.283 20.645
hybrid contribution -1.159 0.179 1.053 1.576
sum 5.338 -3.309 -18.230 19.282
Atomic orbital electron populations
1.22226 0.99769 0.99271 1.00160 1.18930 0.90121 0.92485 0.87714
0.98393 1.21442 1.30220 1.12357 0.91242 0.93223 1.25701 0.95476
0.95928 1.01806 1.70001 1.38051 1.24277 1.23967 0.85539 0.77980
0.79010 0.78970 1.20450 1.20561 1.19539 1.60581 1.57847 1.09323
1.03425 1.21947 0.98356 0.95345 0.90353 1.23196 0.85222 0.95123
0.93831 0.91307 1.23177 1.00657 0.98819 0.95526 1.22953 0.98181
0.98257 0.97827 1.22112 0.93996 0.94900 0.84374 1.22269 0.93491
1.00095 1.01798 1.22597 1.01034 0.81809 0.96311 1.87828 1.25368
1.31438 1.87241 1.22592 0.81121 0.99380 0.98611 1.22566 1.01622
0.94680 1.00580 1.89079 1.27365 1.85437 1.26795 0.91984 0.95387
0.94900 0.92979 0.85424 0.93054 0.94237 0.90932 0.88371 0.89137
0.88784 0.88230 0.90407 0.94923 0.87453 0.94739 0.87522 0.90287
0.88702
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -7.54 8.94 71.98 0.64 -6.90 16
2 C 0.22 11.32 2.57 44.17 0.11 11.44 16
3 H 0.00 -0.11 7.80 -2.38 -0.02 -0.13 16
4 C -0.51 -29.77 8.84 25.60 0.23 -29.54 16
5 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16
6 C 0.01 0.50 5.30 84.66 0.45 0.95 16
7 N -0.92 -54.30 11.32 21.45 0.24 -54.06 16
8 Si 0.96 45.39 29.54 68.60 2.03 47.42 16
9 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16
10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16
11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16
12 N -0.68 -30.12 6.16 -495.45 -3.05 -33.17 16
13 C 0.07 2.50 5.26 86.30 0.45 2.96 16
14 C 0.08 2.37 3.47 31.37 0.11 2.48 16
15 H 0.07 1.82 8.09 -2.38 -0.02 1.80 16
16 C -0.14 -2.94 6.62 32.01 0.21 -2.73 16
17 C -0.13 -2.31 6.26 31.52 0.20 -2.11 16
18 C 0.09 1.95 0.72 -10.59 -0.01 1.94 16
19 C -0.14 -2.97 4.92 30.61 0.15 -2.82 16
20 C 0.06 1.49 6.72 72.04 0.48 1.97 16
21 O -0.40 -10.81 10.76 -148.98 -1.60 -12.42 16
22 C 0.06 1.46 6.72 72.03 0.48 1.94 16
23 C -0.16 -3.20 4.87 30.61 0.15 -3.05 16
24 O -0.37 -11.66 9.66 -148.98 -1.44 -13.09 16
25 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16
26 H 0.03 1.18 7.45 -2.39 -0.02 1.16 16
27 H 0.03 1.52 8.13 -2.39 -0.02 1.50 16
28 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16
29 H 0.33 13.67 8.47 -89.69 -0.76 12.91 16
30 H 0.05 2.02 8.05 -2.39 -0.02 2.00 16
31 H 0.04 1.34 7.44 -2.39 -0.02 1.32 16
32 H 0.07 1.57 8.06 -2.39 -0.02 1.55 16
33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16
34 H 0.09 1.31 7.69 -2.39 -0.02 1.30 16
35 H 0.09 1.25 7.69 -2.39 -0.02 1.23 16
36 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16
37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16
38 H 0.03 1.02 7.90 -2.39 -0.02 1.00 16
39 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16
40 H 0.03 1.04 7.90 -2.39 -0.02 1.02 16
41 H 0.11 2.13 8.14 -2.38 -0.02 2.12 16
42 H 0.08 1.54 8.07 -2.38 -0.02 1.52 16
43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16
Total: -1.00 -66.05 333.74 0.05 -66.00
By element:
Atomic # 1 Polarization: 22.57 SS G_CDS: 0.21 Total: 22.78 kcal
Atomic # 6 Polarization: -27.12 SS G_CDS: 3.66 Total: -23.46 kcal
Atomic # 7 Polarization: -84.42 SS G_CDS: -2.81 Total: -87.23 kcal
Atomic # 8 Polarization: -22.47 SS G_CDS: -3.04 Total: -25.51 kcal
Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal
Total: -66.05 0.05 -66.00 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000878820062.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.400 kcal
(2) G-P(sol) polarization free energy of solvation -66.052 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.453 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.999 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.399 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds