Wall clock time and date at job start Mon Mar 30 2020 00:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46598 * 2 1 4 4 C 1.50697 * 109.46905 * 239.99687 * 2 1 3 5 5 H 1.07997 * 120.00161 * 335.24784 * 4 2 1 6 6 C 1.37881 * 119.99763 * 155.24311 * 4 2 1 7 7 N 1.31515 * 120.00078 * 355.16415 * 6 4 2 8 8 Si 1.86800 * 119.99987 * 175.16268 * 6 4 2 9 9 H 1.48498 * 109.47113 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46933 * 240.00318 * 8 6 4 11 11 H 1.48498 * 109.47048 * 120.00090 * 8 6 4 12 12 N 1.46894 * 109.46977 * 119.99593 * 2 1 3 13 13 C 1.46893 * 111.00414 * 274.99900 * 12 2 1 14 14 C 1.53005 * 109.47447 * 180.02562 * 13 12 2 15 15 H 1.08992 * 110.27185 * 59.30206 * 14 13 12 16 16 C 1.54973 * 110.30701 * 181.38952 * 14 13 12 17 17 C 1.55466 * 100.91615 * 155.16317 * 16 14 13 18 18 C 1.54150 * 102.23882 * 326.17747 * 17 16 14 19 19 C 1.52925 * 109.51423 * 140.95127 * 18 17 16 20 20 C 1.53154 * 109.15554 * 176.52099 * 19 18 17 21 21 O 1.42908 * 109.37752 * 302.88253 * 20 19 18 22 22 C 1.42904 * 114.17844 * 61.41780 * 21 20 19 23 23 C 1.52929 * 109.50910 * 261.34833 * 18 17 16 24 24 O 1.42993 * 107.85596 * 21.14259 * 18 17 16 25 25 H 1.09002 * 109.47508 * 55.05090 * 1 2 3 26 26 H 1.09005 * 109.47337 * 175.05574 * 1 2 3 27 27 H 1.08998 * 109.47432 * 295.05310 * 1 2 3 28 28 H 0.97003 * 119.99745 * 5.14313 * 7 6 4 29 29 H 1.00901 * 110.99901 * 151.04393 * 12 2 1 30 30 H 1.09000 * 109.47245 * 300.00328 * 13 12 2 31 31 H 1.09004 * 109.47283 * 60.00427 * 13 12 2 32 32 H 1.09006 * 111.11504 * 273.15712 * 16 14 13 33 33 H 1.08999 * 111.12270 * 37.30290 * 16 14 13 34 34 H 1.08999 * 110.89575 * 207.96577 * 17 16 14 35 35 H 1.08999 * 110.95340 * 84.41959 * 17 16 14 36 36 H 1.09008 * 109.52222 * 296.41796 * 19 18 17 37 37 H 1.08997 * 109.52643 * 56.61667 * 19 18 17 38 38 H 1.08993 * 109.48661 * 182.91023 * 20 19 18 39 39 H 1.08993 * 109.48829 * 62.85072 * 20 19 18 40 40 H 1.08995 * 109.48433 * 178.60013 * 22 21 20 41 41 H 1.09001 * 109.49985 * 58.55977 * 22 21 20 42 42 H 1.09006 * 109.52288 * 303.37007 * 23 18 17 43 43 H 1.09000 * 109.52772 * 63.56603 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 1.4115 -1.4457 -1.7207 6 6 3.2844 -0.4217 -1.7303 7 7 4.0018 0.5399 -1.1916 8 14 3.9617 -1.3963 -3.1728 9 1 2.9659 -2.4144 -3.5936 10 1 5.2199 -2.0722 -2.7663 11 1 4.2374 -0.4766 -4.3057 12 7 2.0196 -0.6924 1.1994 13 6 2.0824 0.2227 2.3468 14 6 2.5962 -0.5328 3.5742 15 1 3.5869 -0.9426 3.3780 16 6 2.6371 0.4069 4.8059 17 6 2.5265 -0.6227 5.9655 18 6 1.6167 -1.7067 5.3543 19 6 2.1084 -3.0890 5.7857 20 6 1.1494 -4.1544 5.2465 21 8 -0.1725 -3.8847 5.7178 22 6 -0.7006 -2.6271 5.2918 23 6 0.1796 -1.4967 5.8330 24 8 1.6832 -1.5837 3.9312 25 1 -0.3634 0.5887 -0.8423 26 1 -0.3634 -1.0239 -0.0886 27 1 -0.3634 0.4352 0.9309 28 1 3.6831 0.9957 -0.3969 29 1 2.9172 -1.1204 1.0288 30 1 2.7588 1.0463 2.1181 31 1 1.0870 0.6164 2.5525 32 1 3.5793 0.9530 4.8520 33 1 1.7884 1.0909 4.8065 34 1 2.0594 -0.1729 6.8416 35 1 3.5044 -1.0333 6.2168 36 1 3.1073 -3.2618 5.3850 37 1 2.1372 -3.1422 6.8740 38 1 1.4658 -5.1378 5.5940 39 1 1.1581 -4.1334 4.1568 40 1 -1.7156 -2.5114 5.6718 41 1 -0.7136 -2.5881 4.2025 42 1 0.1537 -1.5049 6.9227 43 1 -0.1904 -0.5393 5.4661 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878820064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:08 Heat of formation + Delta-G solvation = -109.847527 kcal Electronic energy + Delta-G solvation = -22039.220358 eV Core-core repulsion = 18890.441853 eV Total energy + Delta-G solvation = -3148.778504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42550 -37.92400 -35.97344 -33.20179 -32.28297 -31.56385 -31.12491 -29.51134 -26.85388 -24.73209 -23.84110 -23.67666 -21.72206 -21.08078 -20.13350 -19.52209 -16.97493 -16.49346 -16.30819 -15.89683 -15.12055 -14.81425 -14.47947 -14.22759 -13.86673 -13.73072 -13.54835 -13.29320 -13.06865 -12.46937 -12.29963 -11.88547 -11.72649 -11.57068 -11.50364 -11.38233 -11.24729 -11.04697 -10.82231 -10.72996 -10.55071 -10.27453 -10.15958 -10.13127 -9.89346 -9.40506 -9.19235 -8.68047 -8.35742 -7.14569 -6.43105 -4.16330 3.42083 3.44470 3.60113 3.85292 3.94874 4.47807 4.49257 4.59038 4.71939 4.88018 5.02269 5.05645 5.13590 5.28668 5.31522 5.41446 5.52212 5.61826 5.65436 5.69147 5.72958 5.77643 5.82948 5.89158 5.93595 5.99866 6.03604 6.12650 6.14338 6.35518 6.43720 6.55165 6.72637 6.78236 7.02658 7.26206 7.39114 7.40850 7.94841 8.40321 8.51610 8.71339 8.86916 9.56930 10.93281 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023295 B = 0.004772 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.711350 B = 5866.161614 C = 6082.753833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.186 3.814 3 H 0.003 0.997 4 C -0.586 4.586 5 H 0.054 0.946 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 1.075 2.925 9 H -0.288 1.288 10 H -0.287 1.287 11 H -0.288 1.288 12 N -0.677 5.677 13 C 0.060 3.940 14 C 0.088 3.912 15 H 0.064 0.936 16 C -0.151 4.151 17 C -0.144 4.144 18 C 0.101 3.899 19 C -0.154 4.154 20 C 0.063 3.937 21 O -0.389 6.389 22 C 0.063 3.937 23 C -0.151 4.151 24 O -0.340 6.340 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.022 0.978 28 H 0.267 0.733 29 H 0.336 0.664 30 H 0.028 0.972 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.387 -3.048 16.146 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.080 3.920 3 H 0.021 0.979 4 C -0.625 4.625 5 H 0.072 0.928 6 C -0.185 4.185 7 N -0.549 5.549 8 Si 0.903 3.097 9 H -0.214 1.214 10 H -0.213 1.213 11 H -0.214 1.214 12 N -0.310 5.310 13 C -0.071 4.071 14 C 0.030 3.970 15 H 0.082 0.918 16 C -0.189 4.189 17 C -0.182 4.182 18 C 0.061 3.939 19 C -0.192 4.192 20 C -0.013 4.013 21 O -0.308 6.308 22 C -0.013 4.013 23 C -0.189 4.189 24 O -0.259 6.259 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.154 0.846 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.964 -3.651 15.228 15.938 hybrid contribution -0.132 1.114 0.901 1.438 sum -3.096 -2.538 16.129 16.618 Atomic orbital electron populations 1.21616 0.98057 1.00089 0.97700 1.19267 0.91528 0.93130 0.88113 0.97927 1.22143 1.03280 1.25638 1.11448 0.92810 1.25958 0.94100 0.96141 1.02300 1.70796 1.41235 1.20839 1.22063 0.83459 0.75595 0.75485 0.75127 1.21368 1.21330 1.21408 1.61100 1.32769 1.32268 1.04875 1.22066 0.99524 0.94124 0.91348 1.23058 0.92953 0.86945 0.94062 0.91784 1.23313 1.02992 0.98197 0.94421 1.23161 1.00191 0.96104 0.98696 1.21819 0.94484 0.94329 0.83233 1.22460 1.00273 0.95299 1.01161 1.22515 0.81934 0.97469 0.99399 1.87846 1.30631 1.37081 1.75206 1.22511 0.96309 0.82660 0.99844 1.22422 0.95442 1.00224 1.00801 1.88609 1.64395 1.54584 1.18349 0.94350 0.93636 0.95878 0.92219 0.84579 0.95410 0.91938 0.90190 0.90466 0.90375 0.90635 0.90522 0.90754 0.89397 0.91859 0.89430 0.91833 0.90812 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.42 37.16 0.35 -2.30 16 2 C 0.19 4.73 2.33 -68.87 -0.16 4.57 16 3 H 0.00 0.09 6.33 -51.93 -0.33 -0.24 16 4 C -0.59 -16.40 8.29 -34.44 -0.29 -16.68 16 5 H 0.05 1.54 7.81 -52.49 -0.41 1.13 16 6 C 0.02 0.55 5.45 -17.82 -0.10 0.45 16 7 N -0.91 -26.86 13.63 55.43 0.76 -26.10 16 8 Si 1.07 25.07 29.91 -169.99 -5.08 19.99 16 9 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.68 -15.64 6.24 -107.96 -0.67 -16.31 16 13 C 0.06 1.15 5.21 -3.83 -0.02 1.13 16 14 C 0.09 1.41 3.64 -25.69 -0.09 1.32 16 15 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 16 C -0.15 -1.88 6.58 -24.38 -0.16 -2.04 16 17 C -0.14 -1.58 6.07 -24.82 -0.15 -1.73 16 18 C 0.10 1.30 0.80 -90.09 -0.07 1.23 16 19 C -0.15 -1.82 4.99 -26.69 -0.13 -1.96 16 20 C 0.06 0.81 6.72 37.24 0.25 1.06 16 21 O -0.39 -5.44 10.76 -35.23 -0.38 -5.82 16 22 C 0.06 0.82 6.72 37.23 0.25 1.07 16 23 C -0.15 -1.80 4.99 -26.69 -0.13 -1.93 16 24 O -0.34 -5.64 9.52 -35.23 -0.34 -5.98 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.02 0.47 7.35 -51.93 -0.38 0.09 16 28 H 0.27 7.82 6.66 -40.82 -0.27 7.55 16 29 H 0.34 8.31 8.35 -39.29 -0.33 7.98 16 30 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 31 H 0.06 1.20 7.36 -51.93 -0.38 0.82 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 34 H 0.08 0.73 7.78 -51.93 -0.40 0.33 16 35 H 0.07 0.77 7.83 -51.93 -0.41 0.36 16 36 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.93 7.91 -51.93 -0.41 0.52 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.95 7.91 -51.93 -0.41 0.54 16 42 H 0.07 0.77 8.11 -51.93 -0.42 0.34 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 335.37 15.07 5.05 5.05 Total: -1.00 -30.09 335.37 -8.71 -38.80 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.59 Total: 6.17 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -0.46 Total: -15.80 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.08 Total: -42.41 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.71 Total: -11.79 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.99 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.09 -8.71 -38.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878820064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.051 kcal (2) G-P(sol) polarization free energy of solvation -30.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds