Wall clock time and date at job start Mon Mar 30 2020 00:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46598 * 2 1 4 4 C 1.50697 * 109.46905 * 239.99687 * 2 1 3 5 5 H 1.07997 * 120.00161 * 335.24784 * 4 2 1 6 6 C 1.37881 * 119.99763 * 155.24311 * 4 2 1 7 7 N 1.31515 * 120.00078 * 355.16415 * 6 4 2 8 8 Si 1.86800 * 119.99987 * 175.16268 * 6 4 2 9 9 H 1.48498 * 109.47113 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46933 * 240.00318 * 8 6 4 11 11 H 1.48498 * 109.47048 * 120.00090 * 8 6 4 12 12 N 1.46894 * 109.46977 * 119.99593 * 2 1 3 13 13 C 1.46893 * 111.00414 * 274.99900 * 12 2 1 14 14 C 1.53005 * 109.47447 * 180.02562 * 13 12 2 15 15 H 1.08992 * 110.27185 * 59.30206 * 14 13 12 16 16 C 1.54973 * 110.30701 * 181.38952 * 14 13 12 17 17 C 1.55466 * 100.91615 * 155.16317 * 16 14 13 18 18 C 1.54150 * 102.23882 * 326.17747 * 17 16 14 19 19 C 1.52925 * 109.51423 * 140.95127 * 18 17 16 20 20 C 1.53154 * 109.15554 * 176.52099 * 19 18 17 21 21 O 1.42908 * 109.37752 * 302.88253 * 20 19 18 22 22 C 1.42904 * 114.17844 * 61.41780 * 21 20 19 23 23 C 1.52929 * 109.50910 * 261.34833 * 18 17 16 24 24 O 1.42993 * 107.85596 * 21.14259 * 18 17 16 25 25 H 1.09002 * 109.47508 * 55.05090 * 1 2 3 26 26 H 1.09005 * 109.47337 * 175.05574 * 1 2 3 27 27 H 1.08998 * 109.47432 * 295.05310 * 1 2 3 28 28 H 0.97003 * 119.99745 * 5.14313 * 7 6 4 29 29 H 1.00901 * 110.99901 * 151.04393 * 12 2 1 30 30 H 1.09000 * 109.47245 * 300.00328 * 13 12 2 31 31 H 1.09004 * 109.47283 * 60.00427 * 13 12 2 32 32 H 1.09006 * 111.11504 * 273.15712 * 16 14 13 33 33 H 1.08999 * 111.12270 * 37.30290 * 16 14 13 34 34 H 1.08999 * 110.89575 * 207.96577 * 17 16 14 35 35 H 1.08999 * 110.95340 * 84.41959 * 17 16 14 36 36 H 1.09008 * 109.52222 * 296.41796 * 19 18 17 37 37 H 1.08997 * 109.52643 * 56.61667 * 19 18 17 38 38 H 1.08993 * 109.48661 * 182.91023 * 20 19 18 39 39 H 1.08993 * 109.48829 * 62.85072 * 20 19 18 40 40 H 1.08995 * 109.48433 * 178.60013 * 22 21 20 41 41 H 1.09001 * 109.49985 * 58.55977 * 22 21 20 42 42 H 1.09006 * 109.52288 * 303.37007 * 23 18 17 43 43 H 1.09000 * 109.52772 * 63.56603 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 1.4115 -1.4457 -1.7207 6 6 3.2844 -0.4217 -1.7303 7 7 4.0018 0.5399 -1.1916 8 14 3.9617 -1.3963 -3.1728 9 1 2.9659 -2.4144 -3.5936 10 1 5.2199 -2.0722 -2.7663 11 1 4.2374 -0.4766 -4.3057 12 7 2.0196 -0.6924 1.1994 13 6 2.0824 0.2227 2.3468 14 6 2.5962 -0.5328 3.5742 15 1 3.5869 -0.9426 3.3780 16 6 2.6371 0.4069 4.8059 17 6 2.5265 -0.6227 5.9655 18 6 1.6167 -1.7067 5.3543 19 6 2.1084 -3.0890 5.7857 20 6 1.1494 -4.1544 5.2465 21 8 -0.1725 -3.8847 5.7178 22 6 -0.7006 -2.6271 5.2918 23 6 0.1796 -1.4967 5.8330 24 8 1.6832 -1.5837 3.9312 25 1 -0.3634 0.5887 -0.8423 26 1 -0.3634 -1.0239 -0.0886 27 1 -0.3634 0.4352 0.9309 28 1 3.6831 0.9957 -0.3969 29 1 2.9172 -1.1204 1.0288 30 1 2.7588 1.0463 2.1181 31 1 1.0870 0.6164 2.5525 32 1 3.5793 0.9530 4.8520 33 1 1.7884 1.0909 4.8065 34 1 2.0594 -0.1729 6.8416 35 1 3.5044 -1.0333 6.2168 36 1 3.1073 -3.2618 5.3850 37 1 2.1372 -3.1422 6.8740 38 1 1.4658 -5.1378 5.5940 39 1 1.1581 -4.1334 4.1568 40 1 -1.7156 -2.5114 5.6718 41 1 -0.7136 -2.5881 4.2025 42 1 0.1537 -1.5049 6.9227 43 1 -0.1904 -0.5393 5.4661 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878820064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:08 Heat of formation + Delta-G solvation = -130.145829 kcal Electronic energy + Delta-G solvation = -22040.100558 eV Core-core repulsion = 18890.441853 eV Total energy + Delta-G solvation = -3149.658705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.48790 -39.08205 -37.80486 -34.74158 -33.64419 -32.98841 -32.09536 -31.17048 -28.24801 -26.75193 -25.18559 -24.69022 -22.90922 -22.33432 -22.02849 -20.57763 -18.97789 -17.69135 -17.37025 -16.94533 -16.44132 -16.11379 -16.04829 -15.66039 -15.45237 -15.25845 -15.14218 -14.54805 -14.37523 -13.68645 -13.39475 -13.27986 -13.16673 -12.87306 -12.82029 -12.69123 -12.61584 -12.49814 -12.39897 -12.23772 -11.99269 -11.87879 -11.75704 -11.52365 -11.20893 -10.76784 -10.48331 -10.42965 -10.35518 -9.05171 -8.67788 -6.42075 1.52247 1.59781 1.78373 2.52517 2.74620 2.95179 3.05849 3.50087 3.60742 3.68611 3.79812 3.95143 4.04290 4.08464 4.22783 4.32700 4.35592 4.40847 4.49201 4.54697 4.62473 4.70870 4.72936 4.75587 4.80133 4.82203 4.83834 4.88000 4.95427 4.98130 5.06161 5.07928 5.16549 5.20519 5.29757 5.42105 5.85357 6.15537 6.23977 6.26952 6.47914 6.59522 6.83585 7.38725 8.68835 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023295 B = 0.004772 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.711350 B = 5866.161614 C = 6082.753833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.184 3.816 3 H -0.023 1.023 4 C -0.602 4.602 5 H 0.043 0.957 6 C -0.024 4.024 7 N -0.932 5.932 8 Si 1.121 2.879 9 H -0.276 1.276 10 H -0.278 1.278 11 H -0.279 1.279 12 N -0.676 5.676 13 C 0.064 3.936 14 C 0.089 3.911 15 H 0.053 0.947 16 C -0.144 4.144 17 C -0.133 4.133 18 C 0.089 3.911 19 C -0.150 4.150 20 C 0.061 3.939 21 O -0.398 6.398 22 C 0.061 3.939 23 C -0.147 4.147 24 O -0.368 6.368 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.255 0.745 29 H 0.323 0.677 30 H 0.018 0.982 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.034 0.966 40 H 0.108 0.892 41 H 0.033 0.967 42 H 0.098 0.902 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 -3.298 17.956 18.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.077 3.923 3 H -0.006 1.006 4 C -0.641 4.641 5 H 0.061 0.939 6 C -0.223 4.223 7 N -0.570 5.570 8 Si 0.943 3.057 9 H -0.201 1.201 10 H -0.204 1.204 11 H -0.205 1.205 12 N -0.307 5.307 13 C -0.066 4.066 14 C 0.032 3.968 15 H 0.071 0.929 16 C -0.182 4.182 17 C -0.170 4.170 18 C 0.049 3.951 19 C -0.188 4.188 20 C -0.016 4.016 21 O -0.317 6.317 22 C -0.016 4.016 23 C -0.184 4.184 24 O -0.287 6.287 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.139 0.861 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.052 0.948 40 H 0.126 0.874 41 H 0.051 0.949 42 H 0.116 0.884 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.926 -3.895 17.064 17.746 hybrid contribution -0.225 1.180 0.369 1.256 sum -3.151 -2.715 17.433 17.922 Atomic orbital electron populations 1.21497 0.96124 1.00014 0.98875 1.19234 0.93110 0.91463 0.88516 1.00582 1.22398 1.03541 1.25527 1.12607 0.93858 1.27289 0.94445 0.96173 1.04376 1.70909 1.41743 1.22041 1.22294 0.82870 0.75602 0.74686 0.72556 1.20080 1.20361 1.20514 1.61027 1.31813 1.32815 1.05060 1.22088 0.99499 0.93655 0.91389 1.22910 0.92012 0.87704 0.94219 0.92903 1.23276 1.03945 0.97973 0.92973 1.23157 1.00574 0.94721 0.98597 1.22129 0.95753 0.95680 0.81523 1.22449 0.99675 0.94204 1.02422 1.22580 0.82060 0.99158 0.97791 1.87832 1.31175 1.37662 1.75079 1.22572 0.97828 0.82986 0.98200 1.22415 0.94425 0.99484 1.02093 1.88590 1.64376 1.54646 1.21137 0.93929 0.94096 0.94073 0.93417 0.86068 0.96429 0.91819 0.88853 0.90034 0.87818 0.89492 0.90594 0.88418 0.87380 0.94800 0.87426 0.94872 0.88395 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.90 9.42 71.98 0.68 -4.22 16 2 C 0.18 9.60 2.33 44.17 0.10 9.70 16 3 H -0.02 -1.33 6.33 -2.39 -0.02 -1.34 16 4 C -0.60 -34.34 8.29 25.60 0.21 -34.13 16 5 H 0.04 2.51 7.81 -2.91 -0.02 2.49 16 6 C -0.02 -1.34 5.45 84.66 0.46 -0.88 16 7 N -0.93 -55.86 13.63 21.45 0.29 -55.57 16 8 Si 1.12 50.47 29.91 68.60 2.05 52.52 16 9 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 12 N -0.68 -32.10 6.24 -495.47 -3.09 -35.20 16 13 C 0.06 2.49 5.21 86.31 0.45 2.94 16 14 C 0.09 2.86 3.64 31.27 0.11 2.97 16 15 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 16 C -0.14 -3.28 6.58 32.12 0.21 -3.06 16 17 C -0.13 -2.47 6.07 31.83 0.19 -2.28 16 18 C 0.09 2.10 0.80 -10.45 -0.01 2.09 16 19 C -0.15 -3.23 4.99 30.62 0.15 -3.08 16 20 C 0.06 1.50 6.72 72.03 0.48 1.99 16 21 O -0.40 -10.66 10.76 -148.98 -1.60 -12.26 16 22 C 0.06 1.51 6.72 72.03 0.48 1.99 16 23 C -0.15 -3.14 4.99 30.62 0.15 -2.98 16 24 O -0.37 -12.10 9.52 -148.98 -1.42 -13.52 16 25 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.04 1.87 8.14 -2.38 -0.02 1.86 16 27 H 0.04 1.69 7.35 -2.39 -0.02 1.67 16 28 H 0.26 15.49 6.66 -92.71 -0.62 14.87 16 29 H 0.32 16.57 8.35 -89.69 -0.75 15.82 16 30 H 0.02 0.73 8.06 -2.39 -0.02 0.71 16 31 H 0.06 2.45 7.36 -2.38 -0.02 2.44 16 32 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.08 1.80 8.05 -2.39 -0.02 1.78 16 34 H 0.10 1.45 7.78 -2.39 -0.02 1.43 16 35 H 0.09 1.45 7.83 -2.39 -0.02 1.43 16 36 H 0.08 1.64 8.14 -2.38 -0.02 1.63 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.03 1.02 7.91 -2.39 -0.02 1.00 16 40 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.03 1.01 7.91 -2.39 -0.02 0.99 16 42 H 0.10 1.65 8.11 -2.38 -0.02 1.63 16 43 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -65.67 335.37 0.29 -65.38 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.37 Total: 27.61 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 3.69 Total: -28.96 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -2.80 Total: -90.76 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -3.02 Total: -25.78 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 2.05 Total: 52.52 kcal Total: -65.67 0.29 -65.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878820064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.769 kcal (2) G-P(sol) polarization free energy of solvation -65.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds