Wall clock time and date at job start Mon Mar 30 2020 01:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45195 * 109.47060 * 2 1 4 4 C 1.34233 * 116.99721 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00360 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99851 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.47498 * 300.00187 * 6 4 3 8 8 C 1.53001 * 109.47313 * 60.00178 * 6 4 3 9 9 C 1.52997 * 109.47347 * 185.67043 * 8 6 4 10 10 C 1.52996 * 117.49878 * 243.93778 * 9 8 6 11 11 C 1.52999 * 117.49836 * 175.27842 * 9 8 6 12 12 N 1.46897 * 109.47203 * 180.02562 * 6 4 3 13 13 C 1.46907 * 111.00075 * 88.27115 * 12 6 4 14 14 H 1.09003 * 109.46605 * 320.80986 * 13 12 6 15 15 C 1.53001 * 109.47094 * 80.81041 * 13 12 6 16 16 C 1.52997 * 109.47109 * 200.81055 * 13 12 6 17 17 C 1.50702 * 109.47174 * 64.99845 * 16 13 12 18 18 H 1.08004 * 119.99836 * 359.97438 * 17 16 13 19 19 C 1.37877 * 120.00062 * 179.97438 * 17 16 13 20 20 N 1.31518 * 119.99764 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99955 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47308 * 89.99618 * 21 19 17 23 23 H 1.48503 * 109.46831 * 209.99469 * 21 19 17 24 24 H 1.48503 * 109.47286 * 329.99355 * 21 19 17 25 25 H 1.08996 * 109.47183 * 299.99993 * 1 2 3 26 26 H 1.08999 * 109.46804 * 59.99905 * 1 2 3 27 27 H 1.09004 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46558 * 240.00096 * 2 1 3 29 29 H 1.08999 * 109.47243 * 120.00402 * 2 1 3 30 30 H 1.09000 * 109.46932 * 305.67110 * 8 6 4 31 31 H 1.09000 * 109.46783 * 65.67196 * 8 6 4 32 32 H 1.08999 * 115.55069 * 29.61235 * 9 8 6 33 33 H 1.09007 * 117.50052 * 359.97438 * 10 9 8 34 34 H 1.09007 * 117.50058 * 145.02090 * 10 9 8 35 35 H 1.09004 * 117.49939 * 214.98027 * 11 9 8 36 36 H 1.08997 * 117.49964 * 359.97438 * 11 9 8 37 37 H 1.00897 * 111.00009 * 212.22209 * 12 6 4 38 38 H 1.09002 * 109.46803 * 304.77244 * 15 13 12 39 39 H 1.09003 * 109.47262 * 64.77044 * 15 13 12 40 40 H 1.08995 * 109.46764 * 184.77211 * 15 13 12 41 41 H 1.09003 * 109.47225 * 184.99695 * 16 13 12 42 42 H 1.08999 * 109.47573 * 305.00000 * 16 13 12 43 43 H 0.97000 * 119.99879 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5852 3.4698 -0.8888 8 6 3.4489 3.6839 1.2505 9 6 3.9160 5.1392 1.1818 10 6 4.9048 5.6147 2.2481 11 6 3.4485 6.0842 2.2906 12 7 5.3878 2.8604 0.0010 13 6 5.9113 2.7922 -1.3699 14 1 5.2637 2.1575 -1.9749 15 6 5.9526 4.1987 -1.9706 16 6 7.3241 2.2054 -1.3477 17 6 7.2673 0.7769 -0.8710 18 1 6.3184 0.3322 -0.6096 19 6 8.4266 0.0377 -0.7686 20 7 8.3769 -1.2091 -0.3530 21 14 10.0678 0.8071 -1.2200 22 1 10.6627 1.4451 -0.0182 23 1 10.9850 -0.2451 -1.7270 24 1 9.8606 1.8329 -2.2736 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.3605 3.6537 1.3023 31 1 3.8682 3.2092 2.1375 32 1 4.0200 5.5528 0.1787 33 1 5.2223 4.8909 2.9987 34 1 5.6593 6.3415 1.9465 35 1 3.2454 7.1196 2.0170 36 1 2.8079 5.6693 3.0686 37 1 5.7906 3.6371 0.5036 38 1 4.9620 4.6493 -1.9089 39 1 6.6649 4.8098 -1.4163 40 1 6.2603 4.1390 -3.0145 41 1 7.7464 2.2367 -2.3521 42 1 7.9495 2.7891 -0.6722 43 1 9.1926 -1.7291 -0.2806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879982876.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:31 Heat of formation + Delta-G solvation = -68.831422 kcal Electronic energy + Delta-G solvation = -21658.480209 eV Core-core repulsion = 18511.480296 eV Total energy + Delta-G solvation = -3146.999913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.09818 -38.15263 -36.61914 -35.66708 -33.05449 -31.84949 -31.28937 -28.23377 -27.52706 -25.11426 -22.87851 -22.51694 -22.34614 -20.59968 -20.09770 -19.68762 -17.24394 -16.40481 -16.27728 -15.85264 -15.65100 -15.06781 -14.52882 -14.16466 -13.76105 -13.59711 -13.17685 -13.09297 -12.81060 -12.49276 -12.30966 -12.11781 -11.89723 -11.64634 -11.57668 -11.50283 -11.42763 -11.23884 -11.13394 -10.68500 -10.40626 -10.19945 -10.07265 -10.00705 -9.73899 -9.67988 -9.42068 -8.77348 -8.26245 -7.71666 -5.71792 -3.64754 2.82980 2.97488 3.44876 3.51849 3.53837 3.71404 4.55265 4.60650 4.68502 4.78224 4.92173 5.00326 5.04054 5.12611 5.27019 5.30191 5.41947 5.50537 5.57318 5.59342 5.62447 5.74443 5.79022 5.81572 5.84718 5.88149 5.90224 5.94725 5.99547 6.06960 6.22008 6.35541 6.48291 6.83074 6.88570 7.22230 7.33095 7.74070 7.97935 8.11336 8.43096 8.94090 9.58451 9.91155 11.42403 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.013056 B = 0.006618 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.042897 B = 4229.757987 C = 5730.807682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.373 6.373 4 C 0.442 3.558 5 O -0.444 6.444 6 C 0.108 3.892 7 H 0.074 0.926 8 C -0.088 4.088 9 C -0.155 4.155 10 C -0.178 4.178 11 C -0.179 4.179 12 N -0.642 5.642 13 C 0.100 3.900 14 H 0.069 0.931 15 C -0.186 4.186 16 C -0.003 4.003 17 C -0.488 4.488 18 H 0.099 0.901 19 C 0.058 3.942 20 N -0.910 5.910 21 Si 0.868 3.132 22 H -0.282 1.282 23 H -0.292 1.292 24 H -0.270 1.270 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.348 0.652 38 H 0.041 0.959 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.016 0.984 42 H 0.010 0.990 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.864 12.839 2.319 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 O -0.292 6.292 4 C 0.279 3.721 5 O -0.325 6.325 6 C -0.004 4.004 7 H 0.092 0.908 8 C -0.126 4.126 9 C -0.173 4.173 10 C -0.215 4.215 11 C -0.216 4.216 12 N -0.276 5.276 13 C -0.009 4.009 14 H 0.087 0.913 15 C -0.245 4.245 16 C -0.040 4.040 17 C -0.526 4.526 18 H 0.117 0.883 19 C -0.140 4.140 20 N -0.551 5.551 21 Si 0.697 3.303 22 H -0.208 1.208 23 H -0.219 1.219 24 H -0.195 1.195 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.169 0.831 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.034 0.966 42 H 0.028 0.972 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.497 11.657 2.452 18.763 hybrid contribution 0.986 1.040 -0.547 1.534 sum -13.510 12.697 1.905 18.638 Atomic orbital electron populations 1.21777 0.93227 1.02559 1.03031 1.22895 0.94647 0.81045 1.02703 1.86448 1.25679 1.31707 1.85366 1.23925 0.80055 0.93370 0.74713 1.90843 1.59357 1.41869 1.40384 1.20920 0.91528 0.88741 0.99250 0.90846 1.21323 1.01531 0.92262 0.97479 1.22305 1.04704 0.94917 0.95415 1.23112 0.92544 1.03830 1.02009 1.22943 0.97909 0.99259 1.01476 1.59933 1.00698 1.49965 1.17009 1.21628 0.99665 0.92822 0.86811 0.91285 1.22648 1.00244 0.99610 1.01969 1.19597 0.90516 0.97828 0.96071 1.21398 0.96463 0.93928 1.40840 0.88270 1.25028 0.98281 0.94835 0.95861 1.69941 1.27356 1.08572 1.49222 0.86977 0.85376 0.79033 0.78937 1.20777 1.21890 1.19534 0.91796 0.91795 0.90617 0.91416 0.91432 0.89908 0.90195 0.87777 0.88255 0.88803 0.89023 0.88815 0.83079 0.93958 0.92815 0.92334 0.96635 0.97199 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.29 37.16 0.38 -1.05 16 2 C 0.06 0.84 6.19 37.16 0.23 1.07 16 3 O -0.37 -5.79 10.02 -39.27 -0.39 -6.18 16 4 C 0.44 8.12 7.14 36.00 0.26 8.37 16 5 O -0.44 -10.51 14.54 -18.75 -0.27 -10.78 16 6 C 0.11 1.67 2.28 -68.87 -0.16 1.51 16 7 H 0.07 1.03 6.79 -51.93 -0.35 0.68 16 8 C -0.09 -1.08 5.02 -26.73 -0.13 -1.22 16 9 C -0.16 -1.62 4.75 -90.62 -0.43 -2.05 16 10 C -0.18 -1.80 9.92 -26.70 -0.26 -2.06 16 11 C -0.18 -1.61 10.25 -26.69 -0.27 -1.88 16 12 N -0.64 -11.91 5.27 -100.95 -0.53 -12.44 16 13 C 0.10 1.99 2.31 -67.71 -0.16 1.83 16 14 H 0.07 1.49 7.80 -51.93 -0.41 1.08 16 15 C -0.19 -2.84 9.17 37.16 0.34 -2.50 16 16 C 0.00 -0.06 3.72 -27.88 -0.10 -0.17 16 17 C -0.49 -14.60 9.39 -34.44 -0.32 -14.92 16 18 H 0.10 3.28 6.33 -52.48 -0.33 2.95 16 19 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 20 N -0.91 -29.89 13.96 55.43 0.77 -29.12 16 21 Si 0.87 22.75 27.47 -169.99 -4.67 18.08 16 22 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 24 H -0.27 -6.75 6.54 56.52 0.37 -6.39 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 29 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.08 0.92 7.98 -51.93 -0.41 0.51 16 31 H 0.08 1.07 7.88 -51.93 -0.41 0.66 16 32 H 0.10 1.07 8.07 -51.93 -0.42 0.65 16 33 H 0.10 1.06 8.03 -51.93 -0.42 0.64 16 34 H 0.09 0.89 8.14 -51.92 -0.42 0.46 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.35 5.78 6.98 -39.29 -0.27 5.50 16 38 H 0.04 0.55 7.10 -51.93 -0.37 0.18 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 42 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 43 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 349.37 15.07 5.26 5.26 Total: -1.00 -35.14 349.37 -8.11 -43.25 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -7.55 Total: 3.29 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -0.73 Total: -11.37 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.24 Total: -41.56 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.67 Total: -16.96 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.67 Total: 18.08 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.14 -8.11 -43.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879982876.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.580 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds