Wall clock time and date at job start Mon Mar 30 2020 01:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45195 * 109.47060 * 2 1 4 4 C 1.34233 * 116.99721 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00360 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99851 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.47498 * 300.00187 * 6 4 3 8 8 C 1.53001 * 109.47313 * 60.00178 * 6 4 3 9 9 C 1.52997 * 109.47347 * 185.67043 * 8 6 4 10 10 C 1.52996 * 117.49878 * 243.93778 * 9 8 6 11 11 C 1.52999 * 117.49836 * 175.27842 * 9 8 6 12 12 N 1.46897 * 109.47203 * 180.02562 * 6 4 3 13 13 C 1.46907 * 111.00075 * 88.27115 * 12 6 4 14 14 H 1.09003 * 109.46605 * 320.80986 * 13 12 6 15 15 C 1.53001 * 109.47094 * 80.81041 * 13 12 6 16 16 C 1.52997 * 109.47109 * 200.81055 * 13 12 6 17 17 C 1.50702 * 109.47174 * 64.99845 * 16 13 12 18 18 H 1.08004 * 119.99836 * 359.97438 * 17 16 13 19 19 C 1.37877 * 120.00062 * 179.97438 * 17 16 13 20 20 N 1.31518 * 119.99764 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99955 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47308 * 89.99618 * 21 19 17 23 23 H 1.48503 * 109.46831 * 209.99469 * 21 19 17 24 24 H 1.48503 * 109.47286 * 329.99355 * 21 19 17 25 25 H 1.08996 * 109.47183 * 299.99993 * 1 2 3 26 26 H 1.08999 * 109.46804 * 59.99905 * 1 2 3 27 27 H 1.09004 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46558 * 240.00096 * 2 1 3 29 29 H 1.08999 * 109.47243 * 120.00402 * 2 1 3 30 30 H 1.09000 * 109.46932 * 305.67110 * 8 6 4 31 31 H 1.09000 * 109.46783 * 65.67196 * 8 6 4 32 32 H 1.08999 * 115.55069 * 29.61235 * 9 8 6 33 33 H 1.09007 * 117.50052 * 359.97438 * 10 9 8 34 34 H 1.09007 * 117.50058 * 145.02090 * 10 9 8 35 35 H 1.09004 * 117.49939 * 214.98027 * 11 9 8 36 36 H 1.08997 * 117.49964 * 359.97438 * 11 9 8 37 37 H 1.00897 * 111.00009 * 212.22209 * 12 6 4 38 38 H 1.09002 * 109.46803 * 304.77244 * 15 13 12 39 39 H 1.09003 * 109.47262 * 64.77044 * 15 13 12 40 40 H 1.08995 * 109.46764 * 184.77211 * 15 13 12 41 41 H 1.09003 * 109.47225 * 184.99695 * 16 13 12 42 42 H 1.08999 * 109.47573 * 305.00000 * 16 13 12 43 43 H 0.97000 * 119.99879 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5852 3.4698 -0.8888 8 6 3.4489 3.6839 1.2505 9 6 3.9160 5.1392 1.1818 10 6 4.9048 5.6147 2.2481 11 6 3.4485 6.0842 2.2906 12 7 5.3878 2.8604 0.0010 13 6 5.9113 2.7922 -1.3699 14 1 5.2637 2.1575 -1.9749 15 6 5.9526 4.1987 -1.9706 16 6 7.3241 2.2054 -1.3477 17 6 7.2673 0.7769 -0.8710 18 1 6.3184 0.3322 -0.6096 19 6 8.4266 0.0377 -0.7686 20 7 8.3769 -1.2091 -0.3530 21 14 10.0678 0.8071 -1.2200 22 1 10.6627 1.4451 -0.0182 23 1 10.9850 -0.2451 -1.7270 24 1 9.8606 1.8329 -2.2736 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.3605 3.6537 1.3023 31 1 3.8682 3.2092 2.1375 32 1 4.0200 5.5528 0.1787 33 1 5.2223 4.8909 2.9987 34 1 5.6593 6.3415 1.9465 35 1 3.2454 7.1196 2.0170 36 1 2.8079 5.6693 3.0686 37 1 5.7906 3.6371 0.5036 38 1 4.9620 4.6493 -1.9089 39 1 6.6649 4.8098 -1.4163 40 1 6.2603 4.1390 -3.0145 41 1 7.7464 2.2367 -2.3521 42 1 7.9495 2.7891 -0.6722 43 1 9.1926 -1.7291 -0.2806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879982876.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:31 Heat of formation + Delta-G solvation = -92.003471 kcal Electronic energy + Delta-G solvation = -21659.485024 eV Core-core repulsion = 18511.480296 eV Total energy + Delta-G solvation = -3148.004728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.51333 -39.26546 -37.81503 -37.17190 -34.87605 -33.56774 -32.42039 -29.99773 -28.90768 -26.30088 -24.66881 -23.68392 -23.15542 -21.69559 -21.40474 -21.21657 -18.66508 -18.61243 -17.56423 -17.20280 -16.79116 -16.44144 -16.13044 -15.36367 -15.13930 -14.88968 -14.75666 -14.29525 -14.18950 -13.87235 -13.71418 -13.54532 -13.35334 -12.92794 -12.78624 -12.62429 -12.51366 -12.48207 -12.32252 -12.23464 -11.86139 -11.65568 -11.53861 -11.46471 -11.35970 -11.03346 -10.90140 -10.73985 -10.61772 -9.11334 -8.07986 -6.06600 1.36663 1.37883 1.39464 1.50061 1.70789 2.46880 2.94181 3.20003 3.36734 3.60808 3.80760 3.99008 4.00759 4.11340 4.13489 4.18029 4.22122 4.31191 4.36991 4.42226 4.54170 4.65537 4.83314 4.87300 4.89131 4.93464 4.96668 4.98158 5.13844 5.15603 5.17092 5.19227 5.29160 5.35902 5.41307 5.51333 5.57074 5.82799 6.21874 6.59194 6.72539 6.97654 7.21118 7.53077 9.10119 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.013056 B = 0.006618 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.042897 B = 4229.757987 C = 5730.807682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.052 3.948 3 O -0.361 6.361 4 C 0.442 3.558 5 O -0.510 6.510 6 C 0.113 3.887 7 H 0.098 0.902 8 C -0.077 4.077 9 C -0.160 4.160 10 C -0.188 4.188 11 C -0.162 4.162 12 N -0.669 5.669 13 C 0.106 3.894 14 H 0.041 0.959 15 C -0.172 4.172 16 C -0.002 4.002 17 C -0.491 4.491 18 H 0.053 0.947 19 C -0.014 4.014 20 N -0.966 5.966 21 Si 0.947 3.053 22 H -0.272 1.272 23 H -0.293 1.293 24 H -0.245 1.245 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.358 0.642 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.019 0.981 42 H 0.018 0.982 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.539 16.399 1.800 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 O -0.279 6.279 4 C 0.283 3.717 5 O -0.395 6.395 6 C 0.001 3.999 7 H 0.116 0.884 8 C -0.115 4.115 9 C -0.178 4.178 10 C -0.225 4.225 11 C -0.199 4.199 12 N -0.304 5.304 13 C -0.004 4.004 14 H 0.060 0.940 15 C -0.231 4.231 16 C -0.040 4.040 17 C -0.530 4.530 18 H 0.072 0.928 19 C -0.207 4.207 20 N -0.610 5.610 21 Si 0.772 3.228 22 H -0.197 1.197 23 H -0.219 1.219 24 H -0.169 1.169 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.181 0.819 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.215 15.270 1.931 21.643 hybrid contribution 1.052 -0.169 -0.336 1.117 sum -14.163 15.101 1.595 20.765 Atomic orbital electron populations 1.21775 0.89338 1.04260 1.04036 1.23171 0.97603 0.80040 1.01414 1.86458 1.24171 1.32737 1.84519 1.24730 0.80418 0.94030 0.72570 1.90838 1.60887 1.44087 1.43725 1.21051 0.89664 0.87302 1.01879 0.88449 1.21245 1.02251 0.93138 0.94868 1.22235 1.05503 0.93693 0.96381 1.23149 0.93607 1.04014 1.01760 1.23024 0.96775 0.99717 1.00354 1.59659 1.02857 1.51168 1.16716 1.21355 0.96218 0.95138 0.87665 0.94010 1.22478 1.02525 0.96242 1.01880 1.19563 0.94018 0.94655 0.95730 1.21713 0.94751 0.96757 1.39763 0.92837 1.26047 1.03240 0.95278 0.96131 1.70150 1.28582 1.10716 1.51555 0.85714 0.79250 0.78408 0.79464 1.19738 1.21943 1.16872 0.90628 0.90849 0.88589 0.93009 0.92682 0.88384 0.91891 0.86718 0.89537 0.87932 0.87283 0.88452 0.81867 0.91031 0.91484 0.91808 0.96284 0.96393 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 10.29 71.98 0.74 -1.70 16 2 C 0.05 1.46 6.19 71.98 0.45 1.91 16 3 O -0.36 -11.28 10.02 -51.45 -0.52 -11.80 16 4 C 0.44 16.78 7.14 71.24 0.51 17.29 16 5 O -0.51 -25.90 14.54 21.98 0.32 -25.59 16 6 C 0.11 3.41 2.28 44.17 0.10 3.51 16 7 H 0.10 2.50 6.79 -2.38 -0.02 2.49 16 8 C -0.08 -1.78 5.02 30.59 0.15 -1.62 16 9 C -0.16 -2.87 4.75 -10.80 -0.05 -2.92 16 10 C -0.19 -3.37 9.92 30.62 0.30 -3.07 16 11 C -0.16 -2.37 10.25 30.62 0.31 -2.06 16 12 N -0.67 -24.67 5.27 -473.29 -2.50 -27.16 16 13 C 0.11 4.13 2.31 44.91 0.10 4.23 16 14 H 0.04 1.83 7.80 -2.39 -0.02 1.81 16 15 C -0.17 -4.70 9.17 71.98 0.66 -4.04 16 16 C 0.00 -0.10 3.72 29.85 0.11 0.02 16 17 C -0.49 -30.44 9.39 25.60 0.24 -30.20 16 18 H 0.05 3.77 6.33 -2.91 -0.02 3.75 16 19 C -0.01 -0.88 5.47 84.65 0.46 -0.42 16 20 N -0.97 -66.31 13.96 21.45 0.30 -66.01 16 21 Si 0.95 47.48 27.47 68.60 1.88 49.36 16 22 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 23 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 24 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.10 1.34 8.14 -2.38 -0.02 1.33 16 28 H 0.05 1.61 8.13 -2.39 -0.02 1.59 16 29 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 30 H 0.10 1.95 7.98 -2.39 -0.02 1.93 16 31 H 0.06 1.66 7.88 -2.39 -0.02 1.65 16 32 H 0.11 1.87 8.07 -2.39 -0.02 1.85 16 33 H 0.09 1.76 8.03 -2.38 -0.02 1.74 16 34 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.36 11.48 6.98 -89.70 -0.63 10.86 16 38 H 0.07 1.54 7.10 -2.39 -0.02 1.53 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 42 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 43 H 0.26 16.47 8.31 -92.71 -0.77 15.70 16 Total: -1.00 -81.50 349.37 3.88 -77.62 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.29 Total: 22.65 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 4.09 Total: -19.07 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -2.20 Total: -93.17 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.20 Total: -37.38 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.88 Total: 49.36 kcal Total: -81.50 3.88 -77.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879982876.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.384 kcal (2) G-P(sol) polarization free energy of solvation -81.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds