Wall clock time and date at job start Mon Mar 30 2020 01:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45204 * 109.47466 * 2 1 4 4 C 1.34229 * 117.00130 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99603 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99912 * 180.02562 * 4 3 2 7 7 H 1.08994 * 109.47436 * 59.99868 * 6 4 3 8 8 C 1.53000 * 109.47137 * 300.00071 * 6 4 3 9 9 C 1.52998 * 109.47136 * 66.42046 * 8 6 4 10 10 C 1.53001 * 117.50037 * 243.64374 * 9 8 6 11 11 C 1.53000 * 60.00049 * 252.51299 * 10 9 8 12 12 N 1.46908 * 109.46990 * 180.02562 * 6 4 3 13 13 C 1.46901 * 110.99701 * 201.11178 * 12 6 4 14 14 H 1.09005 * 109.47359 * 328.32027 * 13 12 6 15 15 C 1.53001 * 109.47079 * 88.31926 * 13 12 6 16 16 C 1.53001 * 109.47160 * 208.32197 * 13 12 6 17 17 C 1.50694 * 109.47108 * 64.99556 * 16 13 12 18 18 H 1.08001 * 120.00221 * 0.02562 * 17 16 13 19 19 C 1.37880 * 119.99841 * 179.97438 * 17 16 13 20 20 N 1.31508 * 120.00082 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47061 * 60.00111 * 21 19 17 23 23 H 1.48495 * 109.47235 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46932 * 300.00325 * 21 19 17 25 25 H 1.08996 * 109.47282 * 59.99538 * 1 2 3 26 26 H 1.08999 * 109.47403 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46586 * 299.99895 * 1 2 3 28 28 H 1.09007 * 109.47031 * 240.00318 * 2 1 3 29 29 H 1.08996 * 109.47282 * 120.00462 * 2 1 3 30 30 H 1.09001 * 109.47270 * 186.42633 * 8 6 4 31 31 H 1.08999 * 109.47331 * 306.42138 * 8 6 4 32 32 H 1.09000 * 115.54992 * 29.35652 * 9 8 6 33 33 H 1.09003 * 117.49843 * 0.02562 * 10 9 8 34 34 H 1.09000 * 117.49706 * 145.02044 * 10 9 8 35 35 H 1.08997 * 117.49520 * 252.50928 * 11 10 9 36 36 H 1.08995 * 117.51868 * 107.48267 * 11 10 9 37 37 H 1.00899 * 110.99446 * 325.06368 * 12 6 4 38 38 H 1.09001 * 109.47389 * 60.00046 * 15 13 12 39 39 H 1.09005 * 109.47133 * 180.02562 * 15 13 12 40 40 H 1.08999 * 109.47184 * 299.99849 * 15 13 12 41 41 H 1.08996 * 109.46908 * 185.00036 * 16 13 12 42 42 H 1.09000 * 109.46603 * 305.00206 * 16 13 12 43 43 H 0.97002 * 119.99762 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9208 2.9373 0.0000 7 1 3.5853 3.4689 0.8904 8 6 3.4486 3.6850 -1.2485 9 6 1.9367 3.9056 -1.1696 10 6 1.0676 3.2284 -2.2312 11 6 1.2863 4.7421 -2.2734 12 7 5.3879 2.8603 -0.0014 13 6 5.9810 4.1100 0.4931 14 1 5.3375 4.9483 0.2259 15 6 6.1222 4.0404 2.0149 16 6 7.3607 4.3047 -0.1388 17 6 7.2097 4.4960 -1.6259 18 1 6.2278 4.4807 -2.0754 19 6 8.3250 4.6916 -2.4126 20 7 9.5206 4.7107 -1.8653 21 14 8.1378 4.9294 -4.2560 22 1 7.2995 6.1269 -4.5179 23 1 9.4769 5.1182 -4.8693 24 1 7.4880 3.7316 -4.8461 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.9540 4.6490 -1.3076 31 1 3.6841 3.0965 -2.1353 32 1 1.5263 3.9933 -0.1637 33 1 1.5729 2.6253 -2.9856 34 1 0.0851 2.8702 -1.9236 35 1 0.4477 5.3797 -1.9936 36 1 1.9356 5.1355 -3.0555 37 1 5.7089 2.0698 0.5372 38 1 6.7657 3.2022 2.2822 39 1 6.5619 4.9679 2.3819 40 1 5.1392 3.9018 2.4651 41 1 7.8378 5.1839 0.2941 42 1 7.9758 3.4256 0.0538 43 1 10.3053 4.8479 -2.4188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879982877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:33 Heat of formation + Delta-G solvation = -75.343520 kcal Electronic energy + Delta-G solvation = -21671.123703 eV Core-core repulsion = 18523.841405 eV Total energy + Delta-G solvation = -3147.282298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48110 -37.77946 -36.88424 -35.97881 -33.00672 -32.00492 -31.28709 -28.14131 -27.18917 -24.97188 -23.18114 -22.56948 -22.22003 -20.81288 -20.16941 -19.61907 -17.42575 -16.58147 -16.54916 -15.99050 -15.26272 -15.15114 -14.37976 -14.29014 -13.84265 -13.79002 -13.22188 -12.98704 -12.79804 -12.49152 -12.30516 -12.02375 -11.76078 -11.61695 -11.57796 -11.47437 -11.38065 -11.16106 -10.90240 -10.60940 -10.51651 -10.50042 -10.18759 -10.08057 -10.04103 -9.60312 -9.26664 -8.95333 -8.20970 -7.69347 -5.83594 -3.80922 2.39581 2.73023 3.43320 3.47505 3.50659 3.96279 4.52171 4.60188 4.75657 4.80357 4.90776 4.99924 5.05588 5.12846 5.16205 5.31657 5.45157 5.53909 5.56514 5.62374 5.72515 5.73631 5.76841 5.80983 5.86855 5.98114 6.02803 6.13116 6.23980 6.29436 6.40055 6.51646 6.60527 6.64963 7.00622 7.46687 7.68458 7.91761 8.01377 8.06306 8.18310 8.62974 9.23217 9.79933 11.28659 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017754 B = 0.005496 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.714612 B = 5093.467772 C = 5741.838963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.348 6.348 4 C 0.464 3.536 5 O -0.501 6.501 6 C 0.104 3.896 7 H 0.070 0.930 8 C -0.074 4.074 9 C -0.142 4.142 10 C -0.171 4.171 11 C -0.184 4.184 12 N -0.649 5.649 13 C 0.089 3.911 14 H 0.069 0.931 15 C -0.182 4.182 16 C 0.035 3.965 17 C -0.487 4.487 18 H 0.058 0.942 19 C 0.051 3.949 20 N -0.904 5.904 21 Si 0.888 3.112 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.279 1.279 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.345 0.655 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.019 0.981 42 H 0.018 0.982 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.075 -4.590 4.875 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.265 6.265 4 C 0.306 3.694 5 O -0.387 6.387 6 C -0.007 4.007 7 H 0.087 0.913 8 C -0.112 4.112 9 C -0.161 4.161 10 C -0.208 4.208 11 C -0.221 4.221 12 N -0.284 5.284 13 C -0.020 4.020 14 H 0.087 0.913 15 C -0.241 4.241 16 C -0.003 4.003 17 C -0.526 4.526 18 H 0.077 0.923 19 C -0.148 4.148 20 N -0.545 5.545 21 Si 0.716 3.284 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.166 0.834 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.631 -4.734 4.168 19.669 hybrid contribution -0.130 -0.235 -0.085 0.282 sum -18.761 -4.969 4.083 19.833 Atomic orbital electron populations 1.21777 0.92910 1.02608 1.03385 1.22946 0.95107 0.81056 1.02324 1.86574 1.24505 1.31336 1.84061 1.23940 0.80508 0.92930 0.72031 1.90655 1.60337 1.42869 1.44838 1.21211 0.91279 0.88379 0.99837 0.91271 1.21162 0.91846 1.01603 0.96571 1.22257 0.94314 1.04366 0.95162 1.22891 1.01002 0.94856 1.02083 1.22970 1.03180 0.93868 1.02129 1.60583 1.00821 1.06341 1.60610 1.21928 0.99988 0.89927 0.90138 0.91290 1.22579 1.00011 1.02364 0.99131 1.19099 0.88724 0.96828 0.95629 1.21092 0.92707 1.46551 0.92258 0.92342 1.24985 0.95500 0.96246 0.98114 1.69949 0.97684 1.51605 1.35252 0.86733 0.76809 0.78456 0.86380 1.20537 1.21662 1.20439 0.91458 0.90613 0.91691 0.91421 0.91686 0.89014 0.90696 0.87865 0.89328 0.89382 0.89225 0.88770 0.83350 0.92782 0.92093 0.94517 0.96235 0.96333 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 37.16 0.38 -0.75 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.35 -4.54 8.20 -39.26 -0.32 -4.86 16 4 C 0.46 7.34 7.26 36.00 0.26 7.60 16 5 O -0.50 -9.35 15.47 -18.75 -0.29 -9.64 16 6 C 0.10 1.65 2.41 -68.86 -0.17 1.48 16 7 H 0.07 0.98 7.36 -51.93 -0.38 0.60 16 8 C -0.07 -1.14 5.14 -26.73 -0.14 -1.27 16 9 C -0.14 -1.77 4.18 -90.62 -0.38 -2.15 16 10 C -0.17 -1.95 9.68 -26.73 -0.26 -2.21 16 11 C -0.18 -2.11 10.25 -26.73 -0.27 -2.38 16 12 N -0.65 -12.46 5.62 -100.95 -0.57 -13.02 16 13 C 0.09 1.75 2.30 -67.71 -0.16 1.60 16 14 H 0.07 1.33 6.82 -51.93 -0.35 0.98 16 15 C -0.18 -3.00 9.15 37.16 0.34 -2.66 16 16 C 0.03 0.87 4.65 -27.89 -0.13 0.74 16 17 C -0.49 -13.59 8.84 -34.44 -0.30 -13.89 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 20 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 21 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 30 H 0.09 1.53 7.11 -51.93 -0.37 1.16 16 31 H 0.07 1.28 7.87 -51.93 -0.41 0.87 16 32 H 0.10 1.20 8.06 -51.93 -0.42 0.79 16 33 H 0.09 1.08 8.03 -51.93 -0.42 0.66 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.35 6.70 7.28 -39.29 -0.29 6.42 16 38 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.52 7.63 -51.93 -0.40 0.13 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -31.27 353.13 -8.48 -39.75 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.65 Total: 3.70 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.69 Total: -11.65 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.17 Total: -39.83 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.61 Total: -14.50 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.27 -8.48 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879982877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.598 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds