Wall clock time and date at job start Mon Mar 30 2020 01:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45204 * 109.47466 * 2 1 4 4 C 1.34229 * 117.00130 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99603 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99912 * 180.02562 * 4 3 2 7 7 H 1.08994 * 109.47436 * 59.99868 * 6 4 3 8 8 C 1.53000 * 109.47137 * 300.00071 * 6 4 3 9 9 C 1.52998 * 109.47136 * 66.42046 * 8 6 4 10 10 C 1.53001 * 117.50037 * 243.64374 * 9 8 6 11 11 C 1.53000 * 60.00049 * 252.51299 * 10 9 8 12 12 N 1.46908 * 109.46990 * 180.02562 * 6 4 3 13 13 C 1.46901 * 110.99701 * 201.11178 * 12 6 4 14 14 H 1.09005 * 109.47359 * 328.32027 * 13 12 6 15 15 C 1.53001 * 109.47079 * 88.31926 * 13 12 6 16 16 C 1.53001 * 109.47160 * 208.32197 * 13 12 6 17 17 C 1.50694 * 109.47108 * 64.99556 * 16 13 12 18 18 H 1.08001 * 120.00221 * 0.02562 * 17 16 13 19 19 C 1.37880 * 119.99841 * 179.97438 * 17 16 13 20 20 N 1.31508 * 120.00082 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47061 * 60.00111 * 21 19 17 23 23 H 1.48495 * 109.47235 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46932 * 300.00325 * 21 19 17 25 25 H 1.08996 * 109.47282 * 59.99538 * 1 2 3 26 26 H 1.08999 * 109.47403 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46586 * 299.99895 * 1 2 3 28 28 H 1.09007 * 109.47031 * 240.00318 * 2 1 3 29 29 H 1.08996 * 109.47282 * 120.00462 * 2 1 3 30 30 H 1.09001 * 109.47270 * 186.42633 * 8 6 4 31 31 H 1.08999 * 109.47331 * 306.42138 * 8 6 4 32 32 H 1.09000 * 115.54992 * 29.35652 * 9 8 6 33 33 H 1.09003 * 117.49843 * 0.02562 * 10 9 8 34 34 H 1.09000 * 117.49706 * 145.02044 * 10 9 8 35 35 H 1.08997 * 117.49520 * 252.50928 * 11 10 9 36 36 H 1.08995 * 117.51868 * 107.48267 * 11 10 9 37 37 H 1.00899 * 110.99446 * 325.06368 * 12 6 4 38 38 H 1.09001 * 109.47389 * 60.00046 * 15 13 12 39 39 H 1.09005 * 109.47133 * 180.02562 * 15 13 12 40 40 H 1.08999 * 109.47184 * 299.99849 * 15 13 12 41 41 H 1.08996 * 109.46908 * 185.00036 * 16 13 12 42 42 H 1.09000 * 109.46603 * 305.00206 * 16 13 12 43 43 H 0.97002 * 119.99762 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9208 2.9373 0.0000 7 1 3.5853 3.4689 0.8904 8 6 3.4486 3.6850 -1.2485 9 6 1.9367 3.9056 -1.1696 10 6 1.0676 3.2284 -2.2312 11 6 1.2863 4.7421 -2.2734 12 7 5.3879 2.8603 -0.0014 13 6 5.9810 4.1100 0.4931 14 1 5.3375 4.9483 0.2259 15 6 6.1222 4.0404 2.0149 16 6 7.3607 4.3047 -0.1388 17 6 7.2097 4.4960 -1.6259 18 1 6.2278 4.4807 -2.0754 19 6 8.3250 4.6916 -2.4126 20 7 9.5206 4.7107 -1.8653 21 14 8.1378 4.9294 -4.2560 22 1 7.2995 6.1269 -4.5179 23 1 9.4769 5.1182 -4.8693 24 1 7.4880 3.7316 -4.8461 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.9540 4.6490 -1.3076 31 1 3.6841 3.0965 -2.1353 32 1 1.5263 3.9933 -0.1637 33 1 1.5729 2.6253 -2.9856 34 1 0.0851 2.8702 -1.9236 35 1 0.4477 5.3797 -1.9936 36 1 1.9356 5.1355 -3.0555 37 1 5.7089 2.0698 0.5372 38 1 6.7657 3.2022 2.2822 39 1 6.5619 4.9679 2.3819 40 1 5.1392 3.9018 2.4651 41 1 7.8378 5.1839 0.2941 42 1 7.9758 3.4256 0.0538 43 1 10.3053 4.8479 -2.4188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879982877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:33 Heat of formation + Delta-G solvation = -93.455149 kcal Electronic energy + Delta-G solvation = -21671.909082 eV Core-core repulsion = 18523.841405 eV Total energy + Delta-G solvation = -3148.067678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.69722 -38.99256 -38.03088 -37.31243 -34.91659 -33.40611 -32.33408 -29.75736 -28.86084 -26.16150 -24.99411 -23.64534 -23.10932 -21.91283 -21.57427 -20.97498 -18.68339 -18.36693 -17.66106 -17.61705 -16.49191 -16.43827 -16.15708 -15.47366 -15.13961 -14.88865 -14.45743 -14.45052 -14.02057 -13.62417 -13.56890 -13.46417 -13.21656 -13.04783 -12.90127 -12.73976 -12.54542 -12.44291 -12.41401 -12.26641 -12.04138 -11.86756 -11.53108 -11.45828 -11.15431 -11.09279 -11.00689 -10.62572 -10.45134 -9.17578 -8.06687 -6.10379 1.14887 1.41352 1.44765 1.51289 1.62320 2.48902 2.99503 3.19094 3.31111 3.70436 3.83397 4.01887 4.03372 4.11919 4.14153 4.20824 4.23843 4.38632 4.41250 4.44994 4.56718 4.69555 4.84552 4.87545 4.88466 4.97624 5.02234 5.08705 5.13018 5.19842 5.23885 5.27686 5.37008 5.45479 5.50519 5.53925 5.66289 5.92700 6.24956 6.39834 6.56531 6.77988 7.03262 7.54602 9.05658 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017754 B = 0.005496 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.714612 B = 5093.467772 C = 5741.838963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.338 6.338 4 C 0.470 3.530 5 O -0.535 6.535 6 C 0.106 3.894 7 H 0.096 0.904 8 C -0.067 4.067 9 C -0.148 4.148 10 C -0.166 4.166 11 C -0.180 4.180 12 N -0.672 5.672 13 C 0.101 3.899 14 H 0.075 0.925 15 C -0.173 4.173 16 C 0.038 3.962 17 C -0.494 4.494 18 H 0.061 0.939 19 C -0.007 4.007 20 N -0.942 5.942 21 Si 0.952 3.048 22 H -0.265 1.265 23 H -0.289 1.289 24 H -0.278 1.278 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.342 0.658 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.067 0.933 41 H -0.002 1.002 42 H -0.015 1.015 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.104 -4.395 4.974 23.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 O -0.254 6.254 4 C 0.314 3.686 5 O -0.425 6.425 6 C -0.004 4.004 7 H 0.113 0.887 8 C -0.105 4.105 9 C -0.166 4.166 10 C -0.203 4.203 11 C -0.217 4.217 12 N -0.306 5.306 13 C -0.008 4.008 14 H 0.093 0.907 15 C -0.232 4.232 16 C 0.000 4.000 17 C -0.533 4.533 18 H 0.079 0.921 19 C -0.202 4.202 20 N -0.584 5.584 21 Si 0.778 3.222 22 H -0.190 1.190 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.137 0.863 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.101 0.899 37 H 0.162 0.838 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.017 0.983 42 H 0.004 0.996 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -21.703 -4.527 4.268 22.577 hybrid contribution 0.772 -0.347 -0.114 0.854 sum -20.930 -4.874 4.154 21.888 Atomic orbital electron populations 1.21789 0.89960 1.04183 1.03905 1.23264 0.97318 0.79657 1.01994 1.86562 1.22602 1.32938 1.83253 1.23850 0.81262 0.92338 0.71196 1.90645 1.61340 1.43822 1.46654 1.21221 0.89170 0.89008 1.01049 0.88670 1.21043 0.94175 1.00025 0.95298 1.22171 0.92193 1.05835 0.96411 1.22930 1.01451 0.94826 1.01065 1.23034 1.03333 0.94196 1.01091 1.60377 1.03352 1.05793 1.61127 1.21582 0.96707 0.90575 0.91937 0.90653 1.22449 1.01759 1.02418 0.96539 1.18986 0.91671 0.94288 0.95005 1.21484 0.92711 1.45360 0.93708 0.92054 1.25834 0.95281 0.96308 1.02822 1.70088 0.98427 1.53035 1.36890 0.85702 0.76917 0.78744 0.80835 1.18985 1.21441 1.20318 0.91072 0.88538 0.90956 0.92267 0.91678 0.90677 0.93200 0.86290 0.90595 0.87296 0.87090 0.89894 0.83762 0.93323 0.91666 0.91428 0.98338 0.99620 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 10.29 71.98 0.74 -0.95 16 2 C 0.05 1.01 6.19 71.98 0.45 1.45 16 3 O -0.34 -8.15 8.20 -51.41 -0.42 -8.57 16 4 C 0.47 14.43 7.26 71.23 0.52 14.95 16 5 O -0.54 -20.00 15.47 21.96 0.34 -19.66 16 6 C 0.11 3.24 2.41 44.17 0.11 3.35 16 7 H 0.10 2.44 7.36 -2.39 -0.02 2.43 16 8 C -0.07 -2.02 5.14 30.59 0.16 -1.86 16 9 C -0.15 -3.33 4.18 -10.79 -0.05 -3.37 16 10 C -0.17 -3.38 9.68 30.59 0.30 -3.08 16 11 C -0.18 -3.67 10.25 30.59 0.31 -3.35 16 12 N -0.67 -25.89 5.62 -473.30 -2.66 -28.55 16 13 C 0.10 3.97 2.30 44.92 0.10 4.07 16 14 H 0.08 2.86 6.82 -2.38 -0.02 2.84 16 15 C -0.17 -5.51 9.15 71.98 0.66 -4.85 16 16 C 0.04 1.99 4.65 29.85 0.14 2.12 16 17 C -0.49 -28.11 8.84 25.60 0.23 -27.89 16 18 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 19 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 20 N -0.94 -58.90 13.29 21.45 0.28 -58.61 16 21 Si 0.95 46.18 29.54 68.60 2.03 48.20 16 22 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 1.27 8.13 -2.38 -0.02 1.25 16 29 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 30 H 0.07 2.49 7.11 -2.39 -0.02 2.47 16 31 H 0.05 1.72 7.87 -2.39 -0.02 1.70 16 32 H 0.12 2.35 8.06 -2.39 -0.02 2.33 16 33 H 0.08 1.75 8.03 -2.39 -0.02 1.73 16 34 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.34 13.45 7.28 -89.69 -0.65 12.80 16 38 H 0.05 1.59 8.12 -2.39 -0.02 1.57 16 39 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.07 1.74 7.63 -2.39 -0.02 1.73 16 41 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 43 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -68.91 353.13 4.01 -64.90 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.32 Total: 21.63 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 4.12 Total: -19.35 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -2.37 Total: -87.16 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.08 Total: -28.23 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -68.91 4.01 -64.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879982877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.552 kcal (2) G-P(sol) polarization free energy of solvation -68.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds