Wall clock time and date at job start Mon Mar 30 2020 01:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45206 * 109.47450 * 2 1 4 4 C 1.34221 * 116.99947 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00569 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99969 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.47376 * 300.00552 * 6 4 3 8 8 C 1.53001 * 109.46942 * 60.00352 * 6 4 3 9 9 C 1.52993 * 109.47498 * 185.66466 * 8 6 4 10 10 C 1.52995 * 117.49895 * 243.02473 * 9 8 6 11 11 C 1.52996 * 60.00203 * 252.50782 * 10 9 8 12 12 N 1.46894 * 109.47386 * 180.02562 * 6 4 3 13 13 C 1.46899 * 111.00148 * 103.58940 * 12 6 4 14 14 H 1.08991 * 109.47151 * 38.69360 * 13 12 6 15 15 C 1.53007 * 109.46913 * 278.69279 * 13 12 6 16 16 C 1.53001 * 109.47319 * 158.69495 * 13 12 6 17 17 C 1.50701 * 109.47013 * 294.18968 * 16 13 12 18 18 H 1.08001 * 119.99808 * 354.92281 * 17 16 13 19 19 C 1.37873 * 119.99882 * 175.20234 * 17 16 13 20 20 N 1.31514 * 120.00228 * 359.72311 * 19 17 16 21 21 Si 1.86801 * 119.99997 * 179.72273 * 19 17 16 22 22 H 1.48498 * 109.47139 * 90.00216 * 21 19 17 23 23 H 1.48505 * 109.47075 * 210.00297 * 21 19 17 24 24 H 1.48501 * 109.46874 * 329.99886 * 21 19 17 25 25 H 1.08994 * 109.47223 * 300.00410 * 1 2 3 26 26 H 1.09009 * 109.46756 * 60.00053 * 1 2 3 27 27 H 1.08993 * 109.47565 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47631 * 239.99598 * 2 1 3 29 29 H 1.09004 * 109.46920 * 119.99515 * 2 1 3 30 30 H 1.09008 * 109.47171 * 305.66746 * 8 6 4 31 31 H 1.09003 * 109.47224 * 65.66178 * 8 6 4 32 32 H 1.09004 * 115.54777 * 28.73357 * 9 8 6 33 33 H 1.08999 * 117.50341 * 0.02562 * 10 9 8 34 34 H 1.09006 * 117.49968 * 145.01936 * 10 9 8 35 35 H 1.09003 * 117.49912 * 252.50666 * 11 10 9 36 36 H 1.09003 * 117.49416 * 107.49001 * 11 10 9 37 37 H 1.00902 * 111.00047 * 227.54482 * 12 6 4 38 38 H 1.08998 * 109.46809 * 60.00320 * 15 13 12 39 39 H 1.09003 * 109.46916 * 179.97438 * 15 13 12 40 40 H 1.08996 * 109.46828 * 300.00107 * 15 13 12 41 41 H 1.08996 * 109.47371 * 174.18428 * 16 13 12 42 42 H 1.09005 * 109.47021 * 54.18593 * 16 13 12 43 43 H 0.96999 * 120.00303 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5853 3.4690 -0.8904 8 6 3.4488 3.6850 1.2486 9 6 3.9160 5.1401 1.1790 10 6 4.8881 5.6223 2.2575 11 6 3.4318 6.0909 2.2755 12 7 5.3877 2.8604 0.0001 13 6 5.9305 3.1541 -1.3330 14 1 5.3532 3.9569 -1.7915 15 6 5.8440 1.9007 -2.2062 16 6 7.3925 3.5863 -1.2046 17 6 7.4656 4.8977 -0.4657 18 1 6.5577 5.4158 -0.1941 19 6 8.6915 5.4388 -0.1414 20 7 9.7970 4.8080 -0.4721 21 14 8.7822 7.0682 0.7678 22 1 8.7835 6.8188 2.2316 23 1 10.0286 7.7795 0.3857 24 1 7.6068 7.9015 0.4085 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.3603 3.6549 1.3004 31 1 3.8678 3.2109 2.1362 32 1 4.0345 5.5483 0.1752 33 1 5.1952 4.9028 3.0165 34 1 5.6467 6.3479 1.9634 35 1 3.2322 7.1247 1.9934 36 1 2.7804 5.6796 3.0467 37 1 5.7821 3.4768 0.6949 38 1 4.8024 1.5928 -2.2977 39 1 6.2463 2.1187 -3.1956 40 1 6.4213 1.0979 -1.7476 41 1 7.8251 3.7044 -2.1980 42 1 7.9487 2.8276 -0.6540 43 1 10.6595 5.1885 -0.2436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879982879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:37 Heat of formation + Delta-G solvation = -80.118985 kcal Electronic energy + Delta-G solvation = -21744.840610 eV Core-core repulsion = 18597.351232 eV Total energy + Delta-G solvation = -3147.489378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.25647 -38.01429 -36.51471 -35.71483 -33.16890 -31.99417 -31.35732 -27.78816 -27.36485 -25.14787 -23.19524 -22.61673 -22.07769 -20.54140 -20.13235 -19.45297 -17.36626 -16.45044 -16.35466 -16.03383 -15.48278 -15.01033 -14.53207 -14.10835 -13.95635 -13.77551 -13.24210 -12.97885 -12.77992 -12.66784 -12.01977 -11.77828 -11.69559 -11.61723 -11.45830 -11.29612 -11.21437 -11.12874 -10.87058 -10.70878 -10.49192 -10.40640 -10.37264 -10.13666 -9.79115 -9.67619 -9.18890 -9.04591 -8.38288 -7.76592 -6.00948 -4.03638 2.60735 2.83175 3.28277 3.35606 3.36091 4.01220 4.42767 4.70370 4.79182 4.85009 4.89804 4.98537 5.10412 5.20507 5.21957 5.35625 5.38659 5.46066 5.62904 5.66666 5.75665 5.82972 5.85341 5.93217 5.97241 6.03131 6.22779 6.24375 6.33824 6.40022 6.49989 6.51175 6.68796 6.96182 7.01730 7.45922 7.66372 7.95325 8.01798 8.22088 8.23927 8.38414 9.02815 9.60015 11.10212 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020514 B = 0.005699 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.593839 B = 4912.054011 C = 6037.704458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.368 6.368 4 C 0.457 3.543 5 O -0.479 6.479 6 C 0.103 3.897 7 H 0.086 0.914 8 C -0.091 4.091 9 C -0.153 4.153 10 C -0.169 4.169 11 C -0.183 4.183 12 N -0.660 5.660 13 C 0.091 3.909 14 H 0.030 0.970 15 C -0.133 4.133 16 C 0.021 3.979 17 C -0.520 4.520 18 H 0.056 0.944 19 C 0.063 3.937 20 N -0.890 5.890 21 Si 0.883 3.117 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.274 1.274 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.370 0.630 38 H 0.030 0.970 39 H 0.046 0.954 40 H 0.059 0.941 41 H 0.019 0.981 42 H 0.031 0.969 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.221 -3.485 2.750 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.286 6.286 4 C 0.297 3.703 5 O -0.363 6.363 6 C -0.010 4.010 7 H 0.104 0.896 8 C -0.129 4.129 9 C -0.171 4.171 10 C -0.206 4.206 11 C -0.220 4.220 12 N -0.297 5.297 13 C -0.018 4.018 14 H 0.048 0.952 15 C -0.191 4.191 16 C -0.016 4.016 17 C -0.559 4.559 18 H 0.074 0.926 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.711 3.289 22 H -0.205 1.205 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.196 0.804 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.037 0.963 42 H 0.049 0.951 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.769 -4.471 2.679 17.560 hybrid contribution 0.118 1.638 0.384 1.686 sum -16.651 -2.833 3.062 17.166 Atomic orbital electron populations 1.21785 0.93053 1.02600 1.03336 1.22903 0.94952 0.81144 1.02315 1.86514 1.25657 1.31581 1.84859 1.24239 0.79718 0.93510 0.72823 1.90631 1.60074 1.42578 1.42979 1.21092 0.92076 0.87893 0.99921 0.89637 1.21432 1.01360 0.93061 0.97059 1.22229 1.04756 0.94161 0.95925 1.23062 0.92425 1.03879 1.01204 1.22943 0.98188 0.99301 1.01600 1.59989 1.00213 1.60338 1.09196 1.21765 0.99177 0.93939 0.86935 0.95242 1.21792 0.99666 0.99045 0.98566 1.19267 0.88567 0.96417 0.97397 1.21190 0.92084 1.05788 1.36818 0.92597 1.24958 0.95917 0.97124 0.95900 1.69959 0.97470 1.38709 1.46788 0.86748 0.77530 0.84313 0.80330 1.20467 1.21372 1.19931 0.91625 0.91617 0.90603 0.91602 0.91573 0.90151 0.90677 0.87456 0.88598 0.88399 0.89107 0.89133 0.80430 0.95132 0.93450 0.92180 0.96255 0.95050 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 37.16 0.38 -0.83 16 2 C 0.06 0.70 6.19 37.16 0.23 0.93 16 3 O -0.37 -5.18 10.02 -39.23 -0.39 -5.58 16 4 C 0.46 7.60 6.58 36.01 0.24 7.84 16 5 O -0.48 -9.40 15.42 -18.75 -0.29 -9.69 16 6 C 0.10 1.66 2.33 -68.87 -0.16 1.50 16 7 H 0.09 1.33 7.23 -51.93 -0.38 0.96 16 8 C -0.09 -1.25 4.88 -26.73 -0.13 -1.38 16 9 C -0.15 -2.17 4.93 -90.63 -0.45 -2.61 16 10 C -0.17 -2.53 9.93 -26.74 -0.27 -2.80 16 11 C -0.18 -2.27 10.25 -26.73 -0.27 -2.55 16 12 N -0.66 -12.90 5.64 -100.96 -0.57 -13.47 16 13 C 0.09 1.90 2.51 -67.71 -0.17 1.73 16 14 H 0.03 0.61 7.47 -51.93 -0.39 0.22 16 15 C -0.13 -2.59 8.84 37.16 0.33 -2.26 16 16 C 0.02 0.53 4.59 -27.88 -0.13 0.40 16 17 C -0.52 -13.71 8.07 -34.44 -0.28 -13.99 16 18 H 0.06 1.39 7.62 -52.49 -0.40 0.99 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 21 Si 0.88 20.79 29.54 -169.99 -5.02 15.77 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 29 H 0.07 0.76 8.13 -51.93 -0.42 0.33 16 30 H 0.08 0.97 7.98 -51.92 -0.41 0.55 16 31 H 0.07 1.06 7.87 -51.93 -0.41 0.65 16 32 H 0.11 1.64 8.07 -51.93 -0.42 1.22 16 33 H 0.10 1.39 8.03 -51.93 -0.42 0.97 16 34 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.37 7.59 5.86 -39.29 -0.23 7.36 16 38 H 0.03 0.55 7.01 -51.93 -0.36 0.19 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -30.06 353.22 -8.61 -38.67 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.62 Total: 6.81 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -0.77 Total: -12.40 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.17 Total: -38.91 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.68 Total: -15.27 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.06 -8.61 -38.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879982879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.447 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds