Wall clock time and date at job start Mon Mar 30 2020 01:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45206 * 109.47450 * 2 1 4 4 C 1.34221 * 116.99947 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00569 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99969 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.47376 * 300.00552 * 6 4 3 8 8 C 1.53001 * 109.46942 * 60.00352 * 6 4 3 9 9 C 1.52993 * 109.47498 * 185.66466 * 8 6 4 10 10 C 1.52995 * 117.49895 * 243.02473 * 9 8 6 11 11 C 1.52996 * 60.00203 * 252.50782 * 10 9 8 12 12 N 1.46894 * 109.47386 * 180.02562 * 6 4 3 13 13 C 1.46899 * 111.00148 * 103.58940 * 12 6 4 14 14 H 1.08991 * 109.47151 * 38.69360 * 13 12 6 15 15 C 1.53007 * 109.46913 * 278.69279 * 13 12 6 16 16 C 1.53001 * 109.47319 * 158.69495 * 13 12 6 17 17 C 1.50701 * 109.47013 * 294.18968 * 16 13 12 18 18 H 1.08001 * 119.99808 * 354.92281 * 17 16 13 19 19 C 1.37873 * 119.99882 * 175.20234 * 17 16 13 20 20 N 1.31514 * 120.00228 * 359.72311 * 19 17 16 21 21 Si 1.86801 * 119.99997 * 179.72273 * 19 17 16 22 22 H 1.48498 * 109.47139 * 90.00216 * 21 19 17 23 23 H 1.48505 * 109.47075 * 210.00297 * 21 19 17 24 24 H 1.48501 * 109.46874 * 329.99886 * 21 19 17 25 25 H 1.08994 * 109.47223 * 300.00410 * 1 2 3 26 26 H 1.09009 * 109.46756 * 60.00053 * 1 2 3 27 27 H 1.08993 * 109.47565 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47631 * 239.99598 * 2 1 3 29 29 H 1.09004 * 109.46920 * 119.99515 * 2 1 3 30 30 H 1.09008 * 109.47171 * 305.66746 * 8 6 4 31 31 H 1.09003 * 109.47224 * 65.66178 * 8 6 4 32 32 H 1.09004 * 115.54777 * 28.73357 * 9 8 6 33 33 H 1.08999 * 117.50341 * 0.02562 * 10 9 8 34 34 H 1.09006 * 117.49968 * 145.01936 * 10 9 8 35 35 H 1.09003 * 117.49912 * 252.50666 * 11 10 9 36 36 H 1.09003 * 117.49416 * 107.49001 * 11 10 9 37 37 H 1.00902 * 111.00047 * 227.54482 * 12 6 4 38 38 H 1.08998 * 109.46809 * 60.00320 * 15 13 12 39 39 H 1.09003 * 109.46916 * 179.97438 * 15 13 12 40 40 H 1.08996 * 109.46828 * 300.00107 * 15 13 12 41 41 H 1.08996 * 109.47371 * 174.18428 * 16 13 12 42 42 H 1.09005 * 109.47021 * 54.18593 * 16 13 12 43 43 H 0.96999 * 120.00303 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5853 3.4690 -0.8904 8 6 3.4488 3.6850 1.2486 9 6 3.9160 5.1401 1.1790 10 6 4.8881 5.6223 2.2575 11 6 3.4318 6.0909 2.2755 12 7 5.3877 2.8604 0.0001 13 6 5.9305 3.1541 -1.3330 14 1 5.3532 3.9569 -1.7915 15 6 5.8440 1.9007 -2.2062 16 6 7.3925 3.5863 -1.2046 17 6 7.4656 4.8977 -0.4657 18 1 6.5577 5.4158 -0.1941 19 6 8.6915 5.4388 -0.1414 20 7 9.7970 4.8080 -0.4721 21 14 8.7822 7.0682 0.7678 22 1 8.7835 6.8188 2.2316 23 1 10.0286 7.7795 0.3857 24 1 7.6068 7.9015 0.4085 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.3603 3.6549 1.3004 31 1 3.8678 3.2109 2.1362 32 1 4.0345 5.5483 0.1752 33 1 5.1952 4.9028 3.0165 34 1 5.6467 6.3479 1.9634 35 1 3.2322 7.1247 1.9934 36 1 2.7804 5.6796 3.0467 37 1 5.7821 3.4768 0.6949 38 1 4.8024 1.5928 -2.2977 39 1 6.2463 2.1187 -3.1956 40 1 6.4213 1.0979 -1.7476 41 1 7.8251 3.7044 -2.1980 42 1 7.9487 2.8276 -0.6540 43 1 10.6595 5.1885 -0.2436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879982879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:36 Heat of formation + Delta-G solvation = -96.945592 kcal Electronic energy + Delta-G solvation = -21745.570267 eV Core-core repulsion = 18597.351232 eV Total energy + Delta-G solvation = -3148.219035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52636 -39.26849 -37.77753 -37.16764 -34.98240 -33.51536 -32.37899 -29.41627 -29.13339 -26.36049 -25.02782 -23.65813 -23.16085 -21.78344 -21.36339 -21.08327 -18.67305 -18.37277 -17.61194 -17.34157 -16.83740 -16.47617 -16.17494 -15.54798 -15.15979 -14.93241 -14.70398 -14.18505 -14.08922 -13.61780 -13.56812 -13.46580 -13.15122 -12.92143 -12.82215 -12.62231 -12.49089 -12.44783 -12.36685 -12.26831 -12.18706 -12.14752 -11.50834 -11.44635 -11.17094 -11.01361 -10.96123 -10.74891 -10.52536 -9.30233 -8.13726 -6.22785 1.31053 1.41759 1.41963 1.51290 1.68111 2.43287 2.93183 3.17852 3.40595 3.58838 3.81110 3.99314 4.04369 4.08787 4.15234 4.22057 4.29019 4.29661 4.39574 4.52505 4.61251 4.66738 4.81801 4.85380 4.87416 4.92606 4.96521 4.96866 5.12982 5.17474 5.19630 5.32396 5.32481 5.37560 5.48669 5.53735 5.57915 5.87460 6.24069 6.29223 6.60286 6.92299 6.95421 7.45599 8.98631 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020514 B = 0.005699 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.593839 B = 4912.054011 C = 6037.704458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.362 6.362 4 C 0.463 3.537 5 O -0.516 6.516 6 C 0.101 3.899 7 H 0.097 0.903 8 C -0.080 4.080 9 C -0.159 4.159 10 C -0.194 4.194 11 C -0.153 4.153 12 N -0.672 5.672 13 C 0.101 3.899 14 H 0.038 0.962 15 C -0.123 4.123 16 C 0.028 3.972 17 C -0.520 4.520 18 H 0.070 0.930 19 C 0.007 3.993 20 N -0.934 5.934 21 Si 0.950 3.050 22 H -0.272 1.272 23 H -0.292 1.292 24 H -0.259 1.259 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.363 0.637 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.040 0.960 41 H -0.005 1.005 42 H -0.006 1.006 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.209 -2.525 3.529 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.279 6.279 4 C 0.305 3.695 5 O -0.403 6.403 6 C -0.011 4.011 7 H 0.114 0.886 8 C -0.118 4.118 9 C -0.177 4.177 10 C -0.231 4.231 11 C -0.190 4.190 12 N -0.308 5.308 13 C -0.008 4.008 14 H 0.056 0.944 15 C -0.181 4.181 16 C -0.009 4.009 17 C -0.558 4.558 18 H 0.088 0.912 19 C -0.191 4.191 20 N -0.575 5.575 21 Si 0.776 3.224 22 H -0.197 1.197 23 H -0.218 1.218 24 H -0.183 1.183 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.187 0.813 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.013 0.987 42 H 0.013 0.987 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.809 -3.508 3.455 20.412 hybrid contribution 0.991 1.264 0.121 1.611 sum -18.818 -2.244 3.576 19.286 Atomic orbital electron populations 1.21800 0.90072 1.04268 1.03811 1.23238 0.97219 0.79659 1.02070 1.86500 1.23915 1.33319 1.84135 1.24227 0.80374 0.93088 0.71852 1.90626 1.61101 1.43647 1.44893 1.21186 0.89825 0.88343 1.01763 0.88566 1.21373 1.02705 0.92269 0.95423 1.22190 1.05098 0.94813 0.95639 1.23035 0.93642 1.04257 1.02134 1.23038 0.96006 0.99470 1.00483 1.59916 1.02669 1.60306 1.07957 1.21534 0.96296 0.94715 0.88240 0.94385 1.21685 1.00219 0.97671 0.98524 1.19113 0.91113 0.95443 0.95275 1.21522 0.92533 1.05865 1.35891 0.91182 1.25821 0.95599 1.00790 0.96893 1.70112 0.98086 1.40712 1.48588 0.85671 0.77650 0.79954 0.79167 1.19706 1.21794 1.18283 0.91000 0.91241 0.88352 0.92057 0.91788 0.87606 0.91043 0.88590 0.88667 0.90593 0.88024 0.86948 0.81276 0.93728 0.92493 0.94108 0.98687 0.98721 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 10.29 71.98 0.74 -1.13 16 2 C 0.05 1.09 6.19 71.98 0.45 1.53 16 3 O -0.36 -9.40 10.02 -51.33 -0.51 -9.92 16 4 C 0.46 14.80 6.58 71.24 0.47 15.27 16 5 O -0.52 -20.11 15.42 21.97 0.34 -19.77 16 6 C 0.10 3.11 2.33 44.17 0.10 3.21 16 7 H 0.10 2.79 7.23 -2.39 -0.02 2.78 16 8 C -0.08 -2.01 4.88 30.59 0.15 -1.86 16 9 C -0.16 -4.18 4.93 -10.80 -0.05 -4.23 16 10 C -0.19 -5.53 9.93 30.59 0.30 -5.23 16 11 C -0.15 -3.30 10.25 30.59 0.31 -2.99 16 12 N -0.67 -26.26 5.64 -473.32 -2.67 -28.93 16 13 C 0.10 4.26 2.51 44.92 0.11 4.38 16 14 H 0.04 1.54 7.47 -2.39 -0.02 1.52 16 15 C -0.12 -4.81 8.84 71.98 0.64 -4.17 16 16 C 0.03 1.46 4.59 29.85 0.14 1.60 16 17 C -0.52 -27.76 8.07 25.60 0.21 -27.55 16 18 H 0.07 3.48 7.62 -2.91 -0.02 3.45 16 19 C 0.01 0.37 5.46 84.65 0.46 0.83 16 20 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 21 Si 0.95 42.99 29.54 68.60 2.03 45.02 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 29 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 30 H 0.11 2.15 7.98 -2.38 -0.02 2.13 16 31 H 0.07 1.88 7.87 -2.39 -0.02 1.86 16 32 H 0.10 2.76 8.07 -2.38 -0.02 2.74 16 33 H 0.09 2.68 8.03 -2.39 -0.02 2.66 16 34 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 35 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.36 14.99 5.86 -89.69 -0.53 14.46 16 38 H 0.04 1.59 7.01 -2.39 -0.02 1.58 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 41 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 43 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -66.07 353.22 3.93 -62.14 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.44 Total: 28.05 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 4.03 Total: -20.34 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -2.39 Total: -85.18 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.18 Total: -29.68 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -66.07 3.93 -62.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879982879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.809 kcal (2) G-P(sol) polarization free energy of solvation -66.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds