Wall clock time and date at job start Mon Mar 30 2020 01:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.46933 * 2 1 4 4 C 1.34230 * 117.00045 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99819 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99984 * 179.97438 * 4 3 2 7 7 H 1.09006 * 109.47446 * 299.99540 * 6 4 3 8 8 C 1.52997 * 109.47513 * 59.99539 * 6 4 3 9 9 C 1.52998 * 109.47388 * 184.99859 * 8 6 4 10 10 C 1.52995 * 117.49937 * 243.74654 * 9 8 6 11 11 C 1.53007 * 117.49865 * 175.08818 * 9 8 6 12 12 N 1.46905 * 109.47142 * 179.97438 * 6 4 3 13 13 C 1.46902 * 110.99800 * 154.99939 * 12 6 4 14 14 C 1.53006 * 109.46626 * 180.02562 * 13 12 6 15 15 C 1.52999 * 109.46623 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46953 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99816 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00344 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99769 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00300 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46819 * 59.99744 * 20 18 16 22 22 H 1.48494 * 109.47285 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47196 * 300.00241 * 20 18 16 24 24 H 1.09005 * 109.47039 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47466 * 300.00437 * 1 2 3 26 26 H 1.09001 * 109.47384 * 60.00324 * 1 2 3 27 27 H 1.08998 * 109.47513 * 240.00117 * 2 1 3 28 28 H 1.08997 * 109.46896 * 119.99644 * 2 1 3 29 29 H 1.09001 * 109.47271 * 305.00369 * 8 6 4 30 30 H 1.08998 * 109.46982 * 64.99796 * 8 6 4 31 31 H 1.09004 * 115.55057 * 29.42174 * 9 8 6 32 32 H 1.08999 * 117.50440 * 0.02562 * 10 9 8 33 33 H 1.09006 * 117.49553 * 145.02359 * 10 9 8 34 34 H 1.08996 * 117.49578 * 214.97979 * 11 9 8 35 35 H 1.08994 * 117.50013 * 359.97438 * 11 9 8 36 36 H 1.00904 * 110.99696 * 31.04368 * 12 6 4 37 37 H 1.08993 * 109.47737 * 60.00169 * 13 12 6 38 38 H 1.09000 * 109.47263 * 299.99731 * 13 12 6 39 39 H 1.09000 * 109.47050 * 299.99824 * 14 13 12 40 40 H 1.09001 * 109.46801 * 59.99937 * 14 13 12 41 41 H 1.09000 * 109.47486 * 299.99829 * 15 14 13 42 42 H 1.09001 * 109.47362 * 60.00551 * 15 14 13 43 43 H 0.97000 * 120.00540 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 -0.0012 7 1 3.5844 3.4694 -0.8912 8 6 3.4494 3.6849 1.2479 9 6 3.9307 5.1359 1.1860 10 6 4.9151 5.6001 2.2613 11 6 3.4630 6.0832 2.2928 12 7 5.3876 2.8607 -0.0010 13 6 5.9783 4.0741 -0.5812 14 6 7.5038 3.9569 -0.5644 15 6 8.1190 5.2204 -1.1692 16 6 9.6216 5.1053 -1.1521 17 1 10.0907 4.2193 -0.7504 18 6 10.3973 6.1310 -1.6492 19 7 9.8261 7.2096 -2.1388 20 14 12.2598 5.9885 -1.6273 21 1 12.6751 4.8060 -2.4238 22 1 12.8569 7.2148 -2.2144 23 1 12.7278 5.8311 -0.2268 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.3606 3.6649 1.2942 30 1 3.8597 3.2036 2.1357 31 1 4.0469 5.5504 0.1846 32 1 5.2203 4.8717 3.0126 33 1 5.6788 6.3203 1.9673 34 1 3.2719 7.1209 2.0195 35 1 2.8121 5.6728 3.0647 36 1 5.7065 2.0355 -0.4864 37 1 5.6738 4.9420 0.0037 38 1 5.6345 4.1900 -1.6091 39 1 7.8479 3.8408 0.4633 40 1 7.8079 3.0891 -1.1496 41 1 7.7748 5.3361 -2.1969 42 1 7.8149 6.0885 -0.5843 43 1 10.3717 7.9311 -2.4889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879983914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:27 Heat of formation + Delta-G solvation = -80.266662 kcal Electronic energy + Delta-G solvation = -20733.902355 eV Core-core repulsion = 17586.406573 eV Total energy + Delta-G solvation = -3147.495782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.76180 -38.25571 -36.87312 -35.61571 -33.69839 -32.24132 -31.58034 -29.37974 -26.38561 -25.06653 -23.23087 -22.37366 -22.06332 -20.79354 -20.59768 -19.75554 -17.78807 -16.91315 -16.77601 -16.17059 -15.53699 -15.42879 -14.53979 -14.42269 -14.07317 -14.03756 -13.81671 -13.18532 -12.97643 -12.69214 -12.30319 -12.20038 -12.01361 -11.86790 -11.63390 -11.45735 -11.33878 -11.23008 -10.80452 -10.77782 -10.72261 -10.53386 -10.33705 -10.03622 -9.77804 -9.55564 -9.31530 -9.03327 -8.31351 -8.25508 -5.96891 -3.98607 2.05646 2.41533 3.36200 3.40004 3.43227 3.91506 4.31030 4.41552 4.50421 4.62377 4.67834 4.77007 4.90263 4.96756 5.08751 5.13355 5.23758 5.37404 5.39012 5.45550 5.61170 5.65158 5.75139 5.80539 5.80637 5.87545 5.93900 6.14944 6.22737 6.28805 6.35889 6.39960 6.72746 6.77465 7.16326 7.24863 7.53748 7.66421 7.71434 7.86586 8.03681 8.47392 9.08322 9.65226 11.14536 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022818 B = 0.003611 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.813527 B = 7751.940228 C = 8643.041868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.462 3.538 5 O -0.498 6.498 6 C 0.099 3.901 7 H 0.081 0.919 8 C -0.070 4.070 9 C -0.148 4.148 10 C -0.166 4.166 11 C -0.187 4.187 12 N -0.670 5.670 13 C 0.047 3.953 14 C -0.106 4.106 15 C 0.025 3.975 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.350 0.650 37 H 0.089 0.911 38 H 0.023 0.977 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.013 0.987 42 H 0.016 0.984 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.060 -9.021 6.102 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.304 3.696 5 O -0.384 6.384 6 C -0.012 4.012 7 H 0.098 0.902 8 C -0.108 4.108 9 C -0.166 4.166 10 C -0.203 4.203 11 C -0.224 4.224 12 N -0.306 5.306 13 C -0.081 4.081 14 C -0.144 4.144 15 C -0.013 4.013 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.171 0.829 37 H 0.107 0.893 38 H 0.041 0.959 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.031 0.969 42 H 0.034 0.966 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.770 -8.970 6.660 22.709 hybrid contribution 0.953 -0.337 -1.073 1.474 sum -18.817 -9.307 5.587 21.724 Atomic orbital electron populations 1.21803 0.92582 1.02933 1.03583 1.23031 0.95369 0.80308 1.02652 1.86507 1.24506 1.32316 1.84071 1.23896 0.80598 0.92883 0.72203 1.90665 1.60259 1.42805 1.44699 1.21255 0.90812 0.88460 1.00656 0.90166 1.21131 1.00021 0.93146 0.96492 1.22234 1.04605 0.94234 0.95558 1.23043 0.92372 1.03497 1.01355 1.23024 0.98387 0.99372 1.01606 1.60638 1.02036 1.06894 1.61001 1.22579 0.97100 0.92074 0.96342 1.21612 0.90905 1.00679 1.01184 1.19040 0.95080 0.91540 0.95638 1.21229 0.91764 1.02747 1.39930 0.92723 1.25016 0.98608 0.95406 0.95435 1.69952 1.35372 1.06959 1.41403 0.86665 0.85756 0.77287 0.78343 1.20288 1.21339 1.20215 0.90276 0.91410 0.91448 0.91265 0.91183 0.90530 0.90558 0.87466 0.88710 0.88365 0.88998 0.89232 0.82919 0.89309 0.95857 0.92386 0.93739 0.96901 0.96564 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.16 0.38 -0.54 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.36 -4.04 10.03 -39.26 -0.39 -4.43 16 4 C 0.46 6.12 7.28 36.00 0.26 6.38 16 5 O -0.50 -7.89 15.39 -18.75 -0.29 -8.18 16 6 C 0.10 1.27 2.74 -68.87 -0.19 1.09 16 7 H 0.08 0.96 7.80 -51.93 -0.41 0.56 16 8 C -0.07 -0.80 5.13 -26.73 -0.14 -0.94 16 9 C -0.15 -1.78 3.82 -90.62 -0.35 -2.13 16 10 C -0.17 -2.12 9.44 -26.70 -0.25 -2.37 16 11 C -0.19 -2.01 10.26 -26.69 -0.27 -2.28 16 12 N -0.67 -10.29 6.16 -107.95 -0.66 -10.95 16 13 C 0.05 0.80 5.09 -3.82 -0.02 0.78 16 14 C -0.11 -2.22 5.41 -26.73 -0.14 -2.37 16 15 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 16 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 17 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 20 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 28 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 29 H 0.08 0.76 7.99 -51.93 -0.42 0.35 16 30 H 0.08 0.93 7.88 -51.93 -0.41 0.52 16 31 H 0.11 1.36 6.78 -51.93 -0.35 1.01 16 32 H 0.09 1.20 8.03 -51.93 -0.42 0.79 16 33 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.35 5.64 7.45 -39.29 -0.29 5.34 16 37 H 0.09 1.48 4.01 -51.93 -0.21 1.27 16 38 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 352.65 15.07 5.31 5.31 Total: -1.00 -31.32 352.65 -8.89 -40.21 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.53 Total: 2.29 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -1.04 Total: -14.79 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.07 Total: -37.37 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.68 Total: -12.61 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.32 -8.89 -40.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879983914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.060 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds