Wall clock time and date at job start Mon Mar 30 2020 01:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.46933 * 2 1 4 4 C 1.34230 * 117.00045 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99819 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99984 * 179.97438 * 4 3 2 7 7 H 1.09006 * 109.47446 * 299.99540 * 6 4 3 8 8 C 1.52997 * 109.47513 * 59.99539 * 6 4 3 9 9 C 1.52998 * 109.47388 * 184.99859 * 8 6 4 10 10 C 1.52995 * 117.49937 * 243.74654 * 9 8 6 11 11 C 1.53007 * 117.49865 * 175.08818 * 9 8 6 12 12 N 1.46905 * 109.47142 * 179.97438 * 6 4 3 13 13 C 1.46902 * 110.99800 * 154.99939 * 12 6 4 14 14 C 1.53006 * 109.46626 * 180.02562 * 13 12 6 15 15 C 1.52999 * 109.46623 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46953 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99816 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00344 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99769 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00300 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46819 * 59.99744 * 20 18 16 22 22 H 1.48494 * 109.47285 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47196 * 300.00241 * 20 18 16 24 24 H 1.09005 * 109.47039 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47466 * 300.00437 * 1 2 3 26 26 H 1.09001 * 109.47384 * 60.00324 * 1 2 3 27 27 H 1.08998 * 109.47513 * 240.00117 * 2 1 3 28 28 H 1.08997 * 109.46896 * 119.99644 * 2 1 3 29 29 H 1.09001 * 109.47271 * 305.00369 * 8 6 4 30 30 H 1.08998 * 109.46982 * 64.99796 * 8 6 4 31 31 H 1.09004 * 115.55057 * 29.42174 * 9 8 6 32 32 H 1.08999 * 117.50440 * 0.02562 * 10 9 8 33 33 H 1.09006 * 117.49553 * 145.02359 * 10 9 8 34 34 H 1.08996 * 117.49578 * 214.97979 * 11 9 8 35 35 H 1.08994 * 117.50013 * 359.97438 * 11 9 8 36 36 H 1.00904 * 110.99696 * 31.04368 * 12 6 4 37 37 H 1.08993 * 109.47737 * 60.00169 * 13 12 6 38 38 H 1.09000 * 109.47263 * 299.99731 * 13 12 6 39 39 H 1.09000 * 109.47050 * 299.99824 * 14 13 12 40 40 H 1.09001 * 109.46801 * 59.99937 * 14 13 12 41 41 H 1.09000 * 109.47486 * 299.99829 * 15 14 13 42 42 H 1.09001 * 109.47362 * 60.00551 * 15 14 13 43 43 H 0.97000 * 120.00540 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 -0.0012 7 1 3.5844 3.4694 -0.8912 8 6 3.4494 3.6849 1.2479 9 6 3.9307 5.1359 1.1860 10 6 4.9151 5.6001 2.2613 11 6 3.4630 6.0832 2.2928 12 7 5.3876 2.8607 -0.0010 13 6 5.9783 4.0741 -0.5812 14 6 7.5038 3.9569 -0.5644 15 6 8.1190 5.2204 -1.1692 16 6 9.6216 5.1053 -1.1521 17 1 10.0907 4.2193 -0.7504 18 6 10.3973 6.1310 -1.6492 19 7 9.8261 7.2096 -2.1388 20 14 12.2598 5.9885 -1.6273 21 1 12.6751 4.8060 -2.4238 22 1 12.8569 7.2148 -2.2144 23 1 12.7278 5.8311 -0.2268 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.3606 3.6649 1.2942 30 1 3.8597 3.2036 2.1357 31 1 4.0469 5.5504 0.1846 32 1 5.2203 4.8717 3.0126 33 1 5.6788 6.3203 1.9673 34 1 3.2719 7.1209 2.0195 35 1 2.8121 5.6728 3.0647 36 1 5.7065 2.0355 -0.4864 37 1 5.6738 4.9420 0.0037 38 1 5.6345 4.1900 -1.6091 39 1 7.8479 3.8408 0.4633 40 1 7.8079 3.0891 -1.1496 41 1 7.7748 5.3361 -2.1969 42 1 7.8149 6.0885 -0.5843 43 1 10.3717 7.9311 -2.4889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879983914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:27 Heat of formation + Delta-G solvation = -98.317439 kcal Electronic energy + Delta-G solvation = -20734.685095 eV Core-core repulsion = 17586.406573 eV Total energy + Delta-G solvation = -3148.278522 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.77966 -39.29521 -37.85471 -36.93869 -35.51258 -33.71933 -32.57963 -30.81328 -27.97218 -26.34836 -24.44690 -23.45234 -23.16825 -22.23758 -21.62277 -21.05559 -18.88105 -18.39300 -17.93201 -17.70874 -16.60016 -16.58108 -16.38741 -15.70684 -15.19289 -15.09908 -14.90421 -14.34456 -14.34013 -13.80027 -13.59417 -13.35654 -13.33469 -13.01545 -12.86430 -12.60558 -12.56291 -12.48515 -12.42034 -12.31121 -12.13135 -11.60906 -11.55728 -11.50164 -11.37860 -11.11021 -11.00311 -10.61663 -10.53584 -9.49986 -8.19557 -6.29987 1.02260 1.39699 1.42672 1.49025 1.50847 2.41307 2.95821 3.12657 3.13535 3.50018 3.77918 3.94483 3.99993 4.07386 4.11049 4.14827 4.23227 4.33157 4.35743 4.38689 4.68184 4.73034 4.82378 4.87053 4.88117 4.93147 4.95219 5.00993 5.12309 5.14690 5.16153 5.24507 5.35430 5.37913 5.42125 5.52402 5.76542 5.86475 5.91326 6.25547 6.29128 6.62962 6.86186 7.38834 8.92021 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022818 B = 0.003611 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.813527 B = 7751.940228 C = 8643.041868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.353 6.353 4 C 0.469 3.531 5 O -0.529 6.529 6 C 0.098 3.902 7 H 0.094 0.906 8 C -0.061 4.061 9 C -0.153 4.153 10 C -0.186 4.186 11 C -0.164 4.164 12 N -0.673 5.673 13 C 0.061 3.939 14 C -0.092 4.092 15 C 0.031 3.969 16 C -0.545 4.545 17 H 0.056 0.944 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.268 1.268 24 H 0.099 0.901 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.345 0.655 37 H 0.094 0.906 38 H 0.024 0.976 39 H 0.052 0.948 40 H 0.042 0.958 41 H -0.009 1.009 42 H -0.004 1.004 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.168 -9.662 6.635 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 O -0.269 6.269 4 C 0.312 3.688 5 O -0.417 6.417 6 C -0.013 4.013 7 H 0.111 0.889 8 C -0.099 4.099 9 C -0.171 4.171 10 C -0.223 4.223 11 C -0.201 4.201 12 N -0.308 5.308 13 C -0.067 4.067 14 C -0.131 4.131 15 C -0.007 4.007 16 C -0.583 4.583 17 H 0.074 0.926 18 C -0.196 4.196 19 N -0.572 5.572 20 Si 0.787 3.213 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.192 1.192 24 H 0.118 0.882 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.166 0.834 37 H 0.112 0.888 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.009 0.991 42 H 0.014 0.986 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.910 -9.617 7.202 24.116 hybrid contribution 1.225 -0.154 -1.242 1.752 sum -19.684 -9.771 5.960 22.770 Atomic orbital electron populations 1.21823 0.90100 1.04416 1.03877 1.23339 0.97270 0.79035 1.02560 1.86501 1.23124 1.33883 1.83439 1.23851 0.81115 0.92451 0.71402 1.90656 1.61076 1.43686 1.46319 1.21329 0.89055 0.88877 1.02009 0.88862 1.21099 1.01259 0.92255 0.95318 1.22230 1.04556 0.94969 0.95329 1.22990 0.93305 1.03801 1.02251 1.23094 0.96587 0.99515 1.00884 1.60548 1.03988 1.05725 1.60573 1.22302 0.94415 0.93213 0.96744 1.21364 0.93582 0.97988 1.00119 1.18913 0.94424 0.93097 0.94275 1.21670 0.93362 1.03039 1.40197 0.92575 1.25939 1.03974 0.94925 0.94807 1.70075 1.37387 1.07715 1.42020 0.85543 0.79306 0.77652 0.78818 1.19355 1.20630 1.19245 0.88205 0.90981 0.91237 0.91492 0.91277 0.88240 0.91194 0.88230 0.88902 0.90403 0.88303 0.87351 0.83406 0.88798 0.95743 0.92930 0.93910 0.99087 0.98564 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.29 71.98 0.74 -0.67 16 2 C 0.05 0.84 6.19 71.98 0.45 1.28 16 3 O -0.35 -7.36 10.03 -51.41 -0.52 -7.88 16 4 C 0.47 11.87 7.28 71.23 0.52 12.39 16 5 O -0.53 -16.49 15.39 21.98 0.34 -16.15 16 6 C 0.10 2.39 2.74 44.17 0.12 2.51 16 7 H 0.09 2.09 7.80 -2.38 -0.02 2.07 16 8 C -0.06 -1.30 5.13 30.59 0.16 -1.14 16 9 C -0.15 -3.49 3.82 -10.79 -0.04 -3.53 16 10 C -0.19 -4.72 9.44 30.62 0.29 -4.44 16 11 C -0.16 -3.22 10.26 30.62 0.31 -2.90 16 12 N -0.67 -20.42 6.16 -495.44 -3.05 -23.48 16 13 C 0.06 2.11 5.09 86.31 0.44 2.55 16 14 C -0.09 -3.96 5.41 30.60 0.17 -3.79 16 15 C 0.03 1.63 4.97 29.85 0.15 1.78 16 16 C -0.54 -31.81 9.11 25.60 0.23 -31.57 16 17 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 18 C 0.00 0.08 5.46 84.65 0.46 0.54 16 19 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 20 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 28 H 0.07 1.14 8.13 -2.39 -0.02 1.13 16 29 H 0.10 1.68 7.99 -2.39 -0.02 1.66 16 30 H 0.07 1.60 7.88 -2.39 -0.02 1.58 16 31 H 0.10 2.45 6.78 -2.38 -0.02 2.43 16 32 H 0.09 2.36 8.03 -2.39 -0.02 2.34 16 33 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 34 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.35 11.08 7.45 -89.69 -0.67 10.41 16 37 H 0.09 3.16 4.01 -2.39 -0.01 3.15 16 38 H 0.02 0.83 8.06 -2.39 -0.02 0.81 16 39 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 41 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 42 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -67.37 352.65 3.38 -63.99 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.31 Total: 20.30 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 3.99 Total: -26.99 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -2.77 Total: -80.37 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.18 Total: -24.03 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -67.37 3.38 -63.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879983914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.332 kcal (2) G-P(sol) polarization free energy of solvation -67.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds