Wall clock time and date at job start Mon Mar 30 2020 01:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46992 * 2 1 4 4 C 1.34223 * 116.99895 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00152 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00152 * 179.97438 * 4 3 2 7 7 H 1.09003 * 109.46762 * 60.00566 * 6 4 3 8 8 C 1.53002 * 109.47315 * 300.00747 * 6 4 3 9 9 C 1.52999 * 109.46977 * 175.27385 * 8 6 4 10 10 C 1.53003 * 117.49682 * 244.18154 * 9 8 6 11 11 C 1.52998 * 117.49564 * 175.52677 * 9 8 6 12 12 N 1.46900 * 109.47780 * 180.02562 * 6 4 3 13 13 C 1.46895 * 111.00003 * 274.00826 * 12 6 4 14 14 C 1.53004 * 109.47341 * 175.93668 * 13 12 6 15 15 C 1.52993 * 109.47513 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47547 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99262 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00089 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00266 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99795 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47145 * 60.00153 * 20 18 16 22 22 H 1.48504 * 109.47371 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47100 * 300.00100 * 20 18 16 24 24 H 1.08998 * 109.47427 * 299.99754 * 1 2 3 25 25 H 1.08995 * 109.47213 * 60.00030 * 1 2 3 26 26 H 1.09001 * 109.47023 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47427 * 240.00245 * 2 1 3 28 28 H 1.09003 * 109.46939 * 119.99707 * 2 1 3 29 29 H 1.09000 * 109.46912 * 295.27765 * 8 6 4 30 30 H 1.09004 * 109.46963 * 55.27485 * 8 6 4 31 31 H 1.08997 * 115.55473 * 29.85813 * 9 8 6 32 32 H 1.08997 * 117.49985 * 0.02562 * 10 9 8 33 33 H 1.09007 * 117.49637 * 145.02346 * 10 9 8 34 34 H 1.09006 * 117.50317 * 214.97874 * 11 9 8 35 35 H 1.09006 * 117.50084 * 359.97438 * 11 9 8 36 36 H 1.00905 * 110.99233 * 37.95789 * 12 6 4 37 37 H 1.09000 * 109.47721 * 55.93495 * 13 12 6 38 38 H 1.09002 * 109.47309 * 295.93425 * 13 12 6 39 39 H 1.09002 * 109.46721 * 300.00117 * 14 13 12 40 40 H 1.09000 * 109.46855 * 59.99296 * 14 13 12 41 41 H 1.08999 * 109.47174 * 300.00396 * 15 14 13 42 42 H 1.09006 * 109.47076 * 59.99701 * 15 14 13 43 43 H 0.97005 * 120.00291 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5843 3.4701 0.8896 8 6 3.4496 3.6838 -1.2498 9 6 3.9368 5.1330 -1.1924 10 6 2.8758 6.2321 -1.1066 11 6 3.6565 6.0211 -2.4062 12 7 5.3877 2.8607 0.0001 13 6 5.9083 2.7381 1.3682 14 6 7.4271 2.5592 1.3219 15 6 7.9695 2.4321 2.7468 16 6 9.4654 2.2554 2.7012 17 1 9.9780 2.2361 1.7507 18 6 10.1795 2.1193 3.8726 19 7 9.5554 2.1433 5.0298 20 14 12.0339 1.9010 3.8159 21 1 12.6510 3.0785 3.1542 22 1 12.5603 1.7775 5.1990 23 1 12.3645 0.6727 3.0495 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8559 3.1987 -2.1374 30 1 2.3606 3.6680 -1.2935 31 1 4.8723 5.2936 -0.6566 32 1 1.8308 5.9227 -1.0907 33 1 3.1135 7.1160 -0.5146 34 1 4.4074 6.7663 -2.6689 35 1 3.1254 5.5728 -3.2460 36 1 5.7099 2.0998 -0.5790 37 1 5.4553 1.8734 1.8533 38 1 5.6656 3.6391 1.9315 39 1 7.6698 1.6581 0.7586 40 1 7.8801 3.4239 0.8368 41 1 7.7267 3.3334 3.3097 42 1 7.5164 1.5676 3.2322 43 1 10.0578 2.0472 5.8541 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879983915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:29 Heat of formation + Delta-G solvation = -88.088872 kcal Electronic energy + Delta-G solvation = -20537.067293 eV Core-core repulsion = 17389.232314 eV Total energy + Delta-G solvation = -3147.834978 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.74282 -38.01795 -36.99825 -35.75251 -33.70177 -32.21095 -31.58660 -29.43918 -26.05631 -25.15045 -23.07452 -22.46464 -22.32511 -20.79024 -20.59146 -19.88031 -17.90314 -16.85472 -16.73522 -16.25686 -15.71855 -14.88718 -14.61377 -14.37998 -14.35625 -14.10884 -13.75527 -13.37295 -13.04857 -12.56999 -12.25130 -12.18955 -11.92632 -11.77137 -11.58165 -11.52735 -11.49450 -11.40471 -10.83354 -10.70865 -10.66731 -10.55361 -10.47097 -10.18506 -9.95402 -9.67273 -9.31567 -9.03227 -8.43510 -8.30013 -5.95438 -3.97404 2.10669 2.55326 3.36992 3.40685 3.43731 3.75556 4.17904 4.43290 4.51647 4.68379 4.72146 4.78088 4.82455 4.90294 5.03300 5.07189 5.17822 5.40300 5.41550 5.51178 5.55141 5.59042 5.66635 5.70078 5.79826 5.82469 5.85480 5.92457 6.05258 6.29340 6.34943 6.39186 6.66989 6.75963 7.14646 7.18502 7.47365 7.67004 7.72414 7.87736 8.04903 8.48107 9.09414 9.66263 11.16048 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.003782 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.056998 B = 7401.943155 C = 8738.754857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.359 6.359 4 C 0.432 3.568 5 O -0.504 6.504 6 C 0.099 3.901 7 H 0.116 0.884 8 C -0.069 4.069 9 C -0.136 4.136 10 C -0.187 4.187 11 C -0.183 4.183 12 N -0.656 5.656 13 C 0.053 3.947 14 C -0.106 4.106 15 C 0.023 3.977 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.351 0.649 37 H 0.030 0.970 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.016 0.984 42 H 0.014 0.986 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.662 2.490 -13.110 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.275 6.275 4 C 0.272 3.728 5 O -0.391 6.391 6 C -0.014 4.014 7 H 0.134 0.866 8 C -0.107 4.107 9 C -0.154 4.154 10 C -0.223 4.223 11 C -0.220 4.220 12 N -0.288 5.288 13 C -0.075 4.075 14 C -0.144 4.144 15 C -0.015 4.015 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.140 0.860 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.172 0.828 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.338 2.829 -12.941 23.440 hybrid contribution 0.824 -1.350 0.358 1.622 sum -18.514 1.479 -12.582 22.434 Atomic orbital electron populations 1.21794 0.92684 1.02887 1.03451 1.23022 0.95326 0.80681 1.02602 1.86542 1.24984 1.32111 1.83874 1.25477 0.80679 0.94545 0.72052 1.90700 1.60325 1.43030 1.45014 1.21618 0.89738 0.87970 1.02111 0.86585 1.21084 1.00106 0.93691 0.95844 1.22239 1.00723 0.90378 1.02083 1.23074 0.97118 1.01148 1.01010 1.22939 1.03596 1.03463 0.92009 1.61046 1.03196 1.50689 1.13841 1.22278 0.97867 1.00045 0.87285 1.21616 0.90988 1.00618 1.01211 1.19050 0.95497 0.97047 0.89863 1.21219 0.92606 1.49459 0.92416 0.92704 1.25022 0.98458 0.95457 0.95570 1.69956 1.35695 1.50681 0.97317 0.86654 0.85699 0.78711 0.76905 1.20215 1.21332 1.20274 0.91445 0.91554 0.90356 0.91371 0.91255 0.91050 0.90621 0.86033 0.89059 0.88977 0.88927 0.89209 0.82783 0.95178 0.91124 0.93437 0.92453 0.96550 0.96809 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.29 37.16 0.38 -0.67 16 2 C 0.06 0.58 6.19 37.16 0.23 0.81 16 3 O -0.36 -4.31 10.03 -39.24 -0.39 -4.70 16 4 C 0.43 5.96 7.07 36.01 0.25 6.22 16 5 O -0.50 -8.57 15.15 -18.75 -0.28 -8.85 16 6 C 0.10 1.22 2.49 -68.86 -0.17 1.05 16 7 H 0.12 1.37 7.84 -51.93 -0.41 0.97 16 8 C -0.07 -0.70 5.13 -26.73 -0.14 -0.84 16 9 C -0.14 -1.39 5.60 -90.62 -0.51 -1.90 16 10 C -0.19 -1.65 10.18 -26.69 -0.27 -1.93 16 11 C -0.18 -1.64 10.25 -26.70 -0.27 -1.91 16 12 N -0.66 -9.67 5.55 -107.95 -0.60 -10.27 16 13 C 0.05 0.95 5.37 -3.82 -0.02 0.93 16 14 C -0.11 -2.27 5.37 -26.73 -0.14 -2.42 16 15 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 16 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 17 H 0.05 1.55 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.64 5.46 -17.83 -0.10 1.54 16 19 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16 20 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.68 7.74 -51.93 -0.40 0.28 16 31 H 0.12 1.46 7.68 -51.93 -0.40 1.06 16 32 H 0.09 0.73 8.03 -51.93 -0.42 0.31 16 33 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.35 5.44 7.66 -39.29 -0.30 5.14 16 37 H 0.03 0.57 7.70 -51.93 -0.40 0.17 16 38 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 359.03 15.07 5.41 5.41 Total: -1.00 -31.90 359.03 -9.14 -41.04 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.78 Total: 1.12 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -1.21 Total: -14.07 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.14 Total: -37.08 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.68 Total: -13.55 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.90 -9.14 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879983915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.049 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds