Wall clock time and date at job start Mon Mar 30 2020 01:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46992 * 2 1 4 4 C 1.34223 * 116.99895 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00152 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00152 * 179.97438 * 4 3 2 7 7 H 1.09003 * 109.46762 * 60.00566 * 6 4 3 8 8 C 1.53002 * 109.47315 * 300.00747 * 6 4 3 9 9 C 1.52999 * 109.46977 * 175.27385 * 8 6 4 10 10 C 1.53003 * 117.49682 * 244.18154 * 9 8 6 11 11 C 1.52998 * 117.49564 * 175.52677 * 9 8 6 12 12 N 1.46900 * 109.47780 * 180.02562 * 6 4 3 13 13 C 1.46895 * 111.00003 * 274.00826 * 12 6 4 14 14 C 1.53004 * 109.47341 * 175.93668 * 13 12 6 15 15 C 1.52993 * 109.47513 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47547 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99262 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00089 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00266 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99795 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47145 * 60.00153 * 20 18 16 22 22 H 1.48504 * 109.47371 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47100 * 300.00100 * 20 18 16 24 24 H 1.08998 * 109.47427 * 299.99754 * 1 2 3 25 25 H 1.08995 * 109.47213 * 60.00030 * 1 2 3 26 26 H 1.09001 * 109.47023 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47427 * 240.00245 * 2 1 3 28 28 H 1.09003 * 109.46939 * 119.99707 * 2 1 3 29 29 H 1.09000 * 109.46912 * 295.27765 * 8 6 4 30 30 H 1.09004 * 109.46963 * 55.27485 * 8 6 4 31 31 H 1.08997 * 115.55473 * 29.85813 * 9 8 6 32 32 H 1.08997 * 117.49985 * 0.02562 * 10 9 8 33 33 H 1.09007 * 117.49637 * 145.02346 * 10 9 8 34 34 H 1.09006 * 117.50317 * 214.97874 * 11 9 8 35 35 H 1.09006 * 117.50084 * 359.97438 * 11 9 8 36 36 H 1.00905 * 110.99233 * 37.95789 * 12 6 4 37 37 H 1.09000 * 109.47721 * 55.93495 * 13 12 6 38 38 H 1.09002 * 109.47309 * 295.93425 * 13 12 6 39 39 H 1.09002 * 109.46721 * 300.00117 * 14 13 12 40 40 H 1.09000 * 109.46855 * 59.99296 * 14 13 12 41 41 H 1.08999 * 109.47174 * 300.00396 * 15 14 13 42 42 H 1.09006 * 109.47076 * 59.99701 * 15 14 13 43 43 H 0.97005 * 120.00291 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5843 3.4701 0.8896 8 6 3.4496 3.6838 -1.2498 9 6 3.9368 5.1330 -1.1924 10 6 2.8758 6.2321 -1.1066 11 6 3.6565 6.0211 -2.4062 12 7 5.3877 2.8607 0.0001 13 6 5.9083 2.7381 1.3682 14 6 7.4271 2.5592 1.3219 15 6 7.9695 2.4321 2.7468 16 6 9.4654 2.2554 2.7012 17 1 9.9780 2.2361 1.7507 18 6 10.1795 2.1193 3.8726 19 7 9.5554 2.1433 5.0298 20 14 12.0339 1.9010 3.8159 21 1 12.6510 3.0785 3.1542 22 1 12.5603 1.7775 5.1990 23 1 12.3645 0.6727 3.0495 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8559 3.1987 -2.1374 30 1 2.3606 3.6680 -1.2935 31 1 4.8723 5.2936 -0.6566 32 1 1.8308 5.9227 -1.0907 33 1 3.1135 7.1160 -0.5146 34 1 4.4074 6.7663 -2.6689 35 1 3.1254 5.5728 -3.2460 36 1 5.7099 2.0998 -0.5790 37 1 5.4553 1.8734 1.8533 38 1 5.6656 3.6391 1.9315 39 1 7.6698 1.6581 0.7586 40 1 7.8801 3.4239 0.8368 41 1 7.7267 3.3334 3.3097 42 1 7.5164 1.5676 3.2322 43 1 10.0578 2.0472 5.8541 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879983915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:29 Heat of formation + Delta-G solvation = -106.301306 kcal Electronic energy + Delta-G solvation = -20537.857043 eV Core-core repulsion = 17389.232314 eV Total energy + Delta-G solvation = -3148.624729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.82914 -38.94756 -37.97861 -37.09139 -35.53210 -33.74427 -32.60380 -30.87841 -27.77220 -26.23765 -24.44758 -23.62739 -23.09923 -22.17287 -21.69963 -21.09059 -19.00154 -18.49091 -17.89236 -17.71798 -16.64884 -16.53449 -16.07390 -15.84895 -15.35101 -15.06177 -14.93822 -14.42415 -14.16871 -13.94309 -13.69006 -13.46739 -13.13135 -12.98086 -12.80269 -12.70751 -12.53721 -12.48556 -12.32077 -12.27842 -12.20791 -11.76456 -11.59307 -11.54386 -11.41079 -11.14052 -10.95996 -10.69838 -10.55948 -9.70561 -8.20822 -6.32171 1.01054 1.39151 1.42889 1.50732 1.59185 2.40443 2.94191 3.06892 3.12088 3.51658 3.85863 3.95312 4.00994 4.04854 4.06258 4.21062 4.24632 4.29201 4.31443 4.39216 4.66218 4.73967 4.80549 4.88493 4.89648 4.90272 4.94660 4.99492 5.07700 5.11009 5.17586 5.20654 5.37672 5.39197 5.48966 5.58273 5.71626 5.78620 5.84108 6.17185 6.24634 6.59666 6.84027 7.36941 8.91058 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.003782 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.056998 B = 7401.943155 C = 8738.754857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.354 6.354 4 C 0.435 3.565 5 O -0.541 6.541 6 C 0.100 3.900 7 H 0.125 0.875 8 C -0.058 4.058 9 C -0.151 4.151 10 C -0.179 4.179 11 C -0.178 4.178 12 N -0.648 5.648 13 C 0.069 3.931 14 C -0.092 4.092 15 C 0.027 3.973 16 C -0.545 4.545 17 H 0.060 0.940 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.281 1.281 23 H -0.268 1.268 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.348 0.652 37 H 0.013 0.987 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.062 0.938 41 H -0.003 1.003 42 H -0.015 1.015 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.364 3.022 -14.439 25.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 O -0.269 6.269 4 C 0.278 3.722 5 O -0.431 6.431 6 C -0.013 4.013 7 H 0.143 0.857 8 C -0.096 4.096 9 C -0.169 4.169 10 C -0.216 4.216 11 C -0.215 4.215 12 N -0.280 5.280 13 C -0.060 4.060 14 C -0.130 4.130 15 C -0.011 4.011 16 C -0.583 4.583 17 H 0.078 0.922 18 C -0.199 4.199 19 N -0.574 5.574 20 Si 0.791 3.209 21 H -0.189 1.189 22 H -0.207 1.207 23 H -0.193 1.193 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.169 0.831 37 H 0.031 0.969 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.015 0.985 42 H 0.003 0.997 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.074 3.376 -14.288 24.870 hybrid contribution 0.957 -1.529 0.780 1.965 sum -19.117 1.848 -13.508 23.481 Atomic orbital electron populations 1.21807 0.89914 1.04365 1.03941 1.23301 0.97469 0.79575 1.02138 1.86536 1.23770 1.33395 1.83234 1.25655 0.81096 0.94492 0.70991 1.90689 1.61237 1.44247 1.46952 1.21746 0.87982 0.87630 1.03896 0.85738 1.21027 1.01028 0.93226 0.94285 1.22118 1.00623 0.90748 1.03419 1.23150 0.97394 1.00379 1.00700 1.23012 1.03561 1.02824 0.92135 1.60993 1.05079 1.50322 1.11576 1.21966 0.95349 0.99575 0.89114 1.21359 0.93434 1.00550 0.97625 1.18947 0.94888 0.94706 0.92549 1.21667 0.93962 1.49794 0.92904 0.92220 1.26005 1.04072 0.94788 0.95044 1.70091 1.37904 1.51299 0.98097 0.85478 0.78935 0.79202 0.77294 1.18929 1.20670 1.19344 0.91292 0.90663 0.88397 0.91346 0.92358 0.91108 0.88825 0.88051 0.87761 0.88894 0.88879 0.88076 0.83145 0.96881 0.90438 0.93844 0.91967 0.98489 0.99699 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 10.29 71.98 0.74 -0.96 16 2 C 0.05 0.94 6.19 71.98 0.45 1.39 16 3 O -0.35 -8.10 10.03 -51.35 -0.52 -8.61 16 4 C 0.44 11.84 7.07 71.24 0.50 12.34 16 5 O -0.54 -18.66 15.15 21.96 0.33 -18.32 16 6 C 0.10 2.39 2.49 44.17 0.11 2.50 16 7 H 0.12 2.81 7.84 -2.39 -0.02 2.79 16 8 C -0.06 -1.07 5.13 30.59 0.16 -0.92 16 9 C -0.15 -2.85 5.60 -10.79 -0.06 -2.91 16 10 C -0.18 -2.78 10.18 30.62 0.31 -2.47 16 11 C -0.18 -2.83 10.25 30.62 0.31 -2.51 16 12 N -0.65 -19.01 5.55 -495.45 -2.75 -21.76 16 13 C 0.07 2.49 5.37 86.31 0.46 2.96 16 14 C -0.09 -4.00 5.37 30.59 0.16 -3.83 16 15 C 0.03 1.48 4.97 29.85 0.15 1.62 16 16 C -0.55 -32.29 9.11 25.60 0.23 -32.06 16 17 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 18 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 19 N -0.93 -58.32 13.29 21.44 0.28 -58.04 16 20 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 21 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 24 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 1.31 8.13 -2.39 -0.02 1.29 16 28 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.43 7.74 -2.38 -0.02 1.41 16 31 H 0.10 2.36 7.68 -2.39 -0.02 2.34 16 32 H 0.10 1.35 8.03 -2.39 -0.02 1.33 16 33 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.35 10.80 7.66 -89.69 -0.69 10.11 16 37 H 0.01 0.51 7.70 -2.39 -0.02 0.49 16 38 H 0.08 2.69 8.13 -2.39 -0.02 2.67 16 39 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H -0.02 -0.93 8.14 -2.38 -0.02 -0.94 16 43 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -69.22 359.03 3.65 -65.57 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.28 Total: 18.18 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 3.99 Total: -24.47 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.46 Total: -79.79 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.18 Total: -26.94 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -69.22 3.65 -65.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879983915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.735 kcal (2) G-P(sol) polarization free energy of solvation -69.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds