Wall clock time and date at job start Mon Mar 30 2020 01:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00039 * 2 1 4 4 H 1.09005 * 109.52423 * 330.12460 * 3 2 1 5 5 C 1.53087 * 109.57401 * 90.28322 * 3 2 1 6 6 O 1.42903 * 109.41791 * 62.32811 * 5 3 2 7 7 C 1.42908 * 114.09581 * 61.15580 * 6 5 3 8 8 C 1.53089 * 109.41275 * 298.84597 * 7 6 5 9 9 C 1.53177 * 109.52481 * 210.00156 * 3 2 1 10 10 H 1.08998 * 109.54547 * 177.05697 * 9 3 2 11 11 N 1.46898 * 109.54441 * 56.87468 * 9 3 2 12 12 C 1.46906 * 111.00477 * 290.28121 * 11 9 3 13 13 C 1.46903 * 111.00275 * 166.32393 * 11 9 3 14 14 C 1.52993 * 109.47362 * 198.58806 * 13 11 9 15 15 C 1.50710 * 115.55080 * 60.43585 * 14 13 11 16 16 H 1.07999 * 120.00160 * 219.25839 * 15 14 13 17 17 C 1.37877 * 119.99605 * 39.53363 * 15 14 13 18 18 N 1.31518 * 120.00108 * 9.95825 * 17 15 14 19 19 Si 1.86796 * 119.99756 * 189.95004 * 17 15 14 20 20 H 1.48501 * 109.47198 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46923 * 120.00118 * 19 17 15 22 22 H 1.48499 * 109.47654 * 240.00196 * 19 17 15 23 23 C 1.53001 * 117.51968 * 206.13359 * 14 13 11 24 24 C 1.52997 * 117.50086 * 274.76900 * 14 13 11 25 25 H 1.08998 * 109.46865 * 300.00185 * 1 2 3 26 26 H 1.09001 * 109.47046 * 60.00137 * 1 2 3 27 27 H 1.08999 * 109.46974 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.48222 * 182.31177 * 5 3 2 29 29 H 1.09006 * 109.48003 * 302.34291 * 5 3 2 30 30 H 1.09002 * 109.47610 * 58.82968 * 7 6 5 31 31 H 1.08998 * 109.47474 * 178.84973 * 7 6 5 32 32 H 1.09000 * 109.52675 * 297.69776 * 8 7 6 33 33 H 1.09010 * 109.51868 * 177.51610 * 8 7 6 34 34 H 1.09004 * 109.46744 * 308.31991 * 12 11 9 35 35 H 1.09000 * 109.46745 * 68.31271 * 12 11 9 36 36 H 1.08999 * 109.46926 * 188.31653 * 12 11 9 37 37 H 1.08995 * 109.47115 * 78.58492 * 13 11 9 38 38 H 1.09000 * 109.46730 * 318.59210 * 13 11 9 39 39 H 0.97001 * 119.99529 * 184.98421 * 18 17 15 40 40 H 1.08999 * 117.49965 * 214.96742 * 23 14 13 41 41 H 1.08999 * 117.49574 * 0.02562 * 23 14 13 42 42 H 1.09000 * 117.49977 * 359.97194 * 24 14 13 43 43 H 1.08998 * 117.50086 * 144.99691 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3446 2.0006 -0.5118 5 6 2.2254 1.7711 1.4424 6 8 3.1436 0.8909 2.0938 7 6 4.4384 0.8479 1.4905 8 6 4.3121 0.3452 0.0500 9 6 3.3607 1.2646 -0.7219 10 1 3.7801 2.2696 -0.7680 11 7 3.1743 0.7469 -2.0839 12 6 2.8344 -0.6822 -2.0621 13 6 4.3655 0.9921 -2.9079 14 6 3.9941 0.8788 -4.3878 15 6 2.9470 1.8490 -4.8713 16 1 2.1935 1.5245 -5.5736 17 6 2.9546 3.1522 -4.4214 18 7 3.9785 3.6033 -3.7300 19 14 1.5108 4.2773 -4.7939 20 1 0.4942 3.5340 -5.5809 21 1 0.9059 4.7445 -3.5207 22 1 1.9840 5.4477 -5.5759 23 6 5.1034 0.4906 -5.3673 24 6 4.0071 -0.5168 -5.0146 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.6306 2.7830 1.4411 29 1 1.2735 1.7612 1.9734 30 1 4.8725 1.8478 1.4899 31 1 5.0807 0.1731 2.0563 32 1 3.9158 -0.6702 0.0520 33 1 5.2927 0.3535 -0.4259 34 1 3.5638 -1.2199 -1.4563 35 1 1.8403 -0.8126 -1.6346 36 1 2.8470 -1.0741 -3.0791 37 1 5.1314 0.2546 -2.6681 38 1 4.7481 1.9924 -2.7048 39 1 3.9527 4.4962 -3.3519 40 1 5.0759 0.9367 -6.3615 41 1 6.0981 0.3154 -4.9575 42 1 4.2807 -1.3543 -4.3728 43 1 3.2584 -0.7333 -5.7766 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880434621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:24 Heat of formation + Delta-G solvation = -41.637659 kcal Electronic energy + Delta-G solvation = -22966.608292 eV Core-core repulsion = 19820.787590 eV Total energy + Delta-G solvation = -3145.820703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.85702 -37.28125 -36.70663 -35.01987 -32.01350 -30.81670 -30.26119 -26.70225 -26.23451 -25.39764 -24.83327 -23.14631 -21.65295 -21.10050 -19.40002 -18.78744 -16.46847 -16.26318 -16.02783 -15.52419 -15.26245 -14.97755 -14.57996 -13.96990 -13.92988 -13.74164 -13.30633 -13.01925 -12.83563 -12.53324 -12.06907 -11.69062 -11.41170 -11.31881 -11.05516 -10.89824 -10.86182 -10.71798 -10.54648 -10.41655 -10.28135 -10.14948 -9.86250 -9.70635 -9.31656 -9.00211 -8.69678 -8.47153 -7.92293 -7.07672 -5.92690 -3.92012 3.32082 3.40636 3.45884 3.90692 4.25284 4.48747 4.68922 5.02196 5.14109 5.17991 5.23260 5.48422 5.49200 5.58940 5.61754 5.64586 5.68945 5.79328 5.84057 5.89950 6.06330 6.15712 6.19154 6.21194 6.31126 6.42950 6.47924 6.67606 6.68848 6.74771 6.83885 7.01432 7.07295 7.24478 7.26738 7.39770 7.58564 7.64934 8.03771 8.21644 8.29778 8.60048 9.02202 9.67423 11.11461 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017296 B = 0.007718 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.473195 B = 3627.137182 C = 4127.792687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.066 3.934 4 H 0.076 0.924 5 C 0.042 3.958 6 O -0.377 6.377 7 C 0.066 3.934 8 C -0.188 4.188 9 C 0.095 3.905 10 H 0.091 0.909 11 N -0.496 5.496 12 C 0.012 3.988 13 C 0.093 3.907 14 C 0.070 3.930 15 C -0.460 4.460 16 H 0.054 0.946 17 C 0.080 3.920 18 N -0.883 5.883 19 Si 0.886 3.114 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.289 1.289 23 C -0.205 4.205 24 C -0.215 4.215 25 H 0.032 0.968 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.011 0.989 35 H 0.081 0.919 36 H 0.063 0.937 37 H -0.011 1.011 38 H 0.117 0.883 39 H 0.256 0.744 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.234 -4.074 9.716 10.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C 0.008 3.992 4 H 0.094 0.906 5 C -0.036 4.036 6 O -0.296 6.296 7 C -0.011 4.011 8 C -0.228 4.228 9 C -0.015 4.015 10 H 0.109 0.891 11 N -0.217 5.217 12 C -0.135 4.135 13 C -0.033 4.033 14 C 0.069 3.931 15 C -0.498 4.498 16 H 0.072 0.928 17 C -0.121 4.121 18 N -0.522 5.522 19 Si 0.714 3.286 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.215 1.215 23 C -0.244 4.244 24 C -0.252 4.252 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.029 0.971 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.007 0.993 38 H 0.134 0.866 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.489 -3.900 9.671 10.721 hybrid contribution -0.157 0.490 -0.130 0.530 sum -2.646 -3.410 9.541 10.472 Atomic orbital electron populations 1.22717 0.82363 1.02107 0.99609 1.88023 1.18587 1.26984 1.94283 1.22864 0.96206 0.85792 0.94377 0.90615 1.23093 0.93763 0.93000 0.93746 1.87886 1.22296 1.65706 1.53682 1.22512 0.84648 1.00200 0.93742 1.22889 1.01029 1.02691 0.96150 1.21780 0.91713 0.98879 0.89139 0.89115 1.61867 1.37478 1.15152 1.07181 1.22863 1.01216 0.88688 1.00771 1.21837 0.87585 1.01622 0.92301 1.18900 0.94658 0.90156 0.89416 1.20378 1.10967 0.93176 1.25229 0.92788 1.24733 0.94946 0.97234 0.95155 1.69833 1.28351 1.17377 1.36632 0.86656 0.83420 0.80603 0.77902 1.19983 1.21085 1.21547 1.22953 0.93288 1.05831 1.02322 1.22913 1.02792 0.94574 1.04950 0.94939 0.93731 0.90241 0.92453 0.89228 0.93545 0.89525 0.89786 0.91351 0.97089 0.90091 0.91880 0.99323 0.86582 0.93429 0.90540 0.92094 0.91728 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.59 101.05 1.07 1.45 16 2 O -0.36 -5.84 6.36 -42.60 -0.27 -6.11 16 3 C 0.07 1.08 2.63 -26.59 -0.07 1.01 16 4 H 0.08 1.29 7.79 -51.93 -0.40 0.89 16 5 C 0.04 0.59 6.49 37.20 0.24 0.83 16 6 O -0.38 -5.83 10.70 -42.60 -0.46 -6.29 16 7 C 0.07 0.94 6.84 37.20 0.25 1.19 16 8 C -0.19 -3.04 4.54 -26.59 -0.12 -3.16 16 9 C 0.09 1.72 2.23 -67.53 -0.15 1.57 16 10 H 0.09 1.77 7.75 -51.93 -0.40 1.37 16 11 N -0.50 -10.37 4.44 -234.67 -1.04 -11.41 16 12 C 0.01 0.24 8.35 60.07 0.50 0.74 16 13 C 0.09 2.15 3.84 -3.83 -0.01 2.13 16 14 C 0.07 1.70 1.70 -155.66 -0.26 1.44 16 15 C -0.46 -12.41 8.83 -34.44 -0.30 -12.72 16 16 H 0.05 1.49 7.83 -52.49 -0.41 1.08 16 17 C 0.08 2.14 5.26 -17.82 -0.09 2.05 16 18 N -0.88 -23.67 10.85 55.43 0.60 -23.07 16 19 Si 0.89 20.97 29.55 -169.99 -5.02 15.95 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.21 -4.74 9.94 -26.73 -0.27 -5.00 16 24 C -0.21 -4.74 8.34 -26.73 -0.22 -4.97 16 25 H 0.03 0.37 7.86 -51.93 -0.41 -0.04 16 26 H 0.04 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 1.12 7.86 -51.93 -0.41 0.71 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.44 5.65 -51.93 -0.29 1.15 16 33 H 0.07 1.12 7.45 -51.92 -0.39 0.73 16 34 H 0.01 0.20 5.62 -51.93 -0.29 -0.09 16 35 H 0.08 1.52 5.16 -51.93 -0.27 1.25 16 36 H 0.06 1.28 5.07 -51.93 -0.26 1.02 16 37 H -0.01 -0.25 7.55 -51.93 -0.39 -0.64 16 38 H 0.12 2.93 5.32 -51.93 -0.28 2.65 16 39 H 0.26 6.58 8.32 -40.82 -0.34 6.24 16 40 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.06 1.33 7.32 -51.93 -0.38 0.95 16 43 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 LS Contribution 324.44 15.07 4.89 4.89 Total: -1.00 -27.98 324.44 -7.84 -35.82 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.10 Total: 3.66 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 0.56 Total: -13.44 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: -0.44 Total: -34.49 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.73 Total: -12.40 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.98 -7.84 -35.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880434621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.814 kcal (2) G-P(sol) polarization free energy of solvation -27.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds