Wall clock time and date at job start Mon Mar 30 2020 01:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00039 * 2 1 4 4 H 1.09005 * 109.52423 * 330.12460 * 3 2 1 5 5 C 1.53087 * 109.57401 * 90.28322 * 3 2 1 6 6 O 1.42903 * 109.41791 * 62.32811 * 5 3 2 7 7 C 1.42908 * 114.09581 * 61.15580 * 6 5 3 8 8 C 1.53089 * 109.41275 * 298.84597 * 7 6 5 9 9 C 1.53177 * 109.52481 * 210.00156 * 3 2 1 10 10 H 1.08998 * 109.54547 * 177.05697 * 9 3 2 11 11 N 1.46898 * 109.54441 * 56.87468 * 9 3 2 12 12 C 1.46906 * 111.00477 * 290.28121 * 11 9 3 13 13 C 1.46903 * 111.00275 * 166.32393 * 11 9 3 14 14 C 1.52993 * 109.47362 * 198.58806 * 13 11 9 15 15 C 1.50710 * 115.55080 * 60.43585 * 14 13 11 16 16 H 1.07999 * 120.00160 * 219.25839 * 15 14 13 17 17 C 1.37877 * 119.99605 * 39.53363 * 15 14 13 18 18 N 1.31518 * 120.00108 * 9.95825 * 17 15 14 19 19 Si 1.86796 * 119.99756 * 189.95004 * 17 15 14 20 20 H 1.48501 * 109.47198 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46923 * 120.00118 * 19 17 15 22 22 H 1.48499 * 109.47654 * 240.00196 * 19 17 15 23 23 C 1.53001 * 117.51968 * 206.13359 * 14 13 11 24 24 C 1.52997 * 117.50086 * 274.76900 * 14 13 11 25 25 H 1.08998 * 109.46865 * 300.00185 * 1 2 3 26 26 H 1.09001 * 109.47046 * 60.00137 * 1 2 3 27 27 H 1.08999 * 109.46974 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.48222 * 182.31177 * 5 3 2 29 29 H 1.09006 * 109.48003 * 302.34291 * 5 3 2 30 30 H 1.09002 * 109.47610 * 58.82968 * 7 6 5 31 31 H 1.08998 * 109.47474 * 178.84973 * 7 6 5 32 32 H 1.09000 * 109.52675 * 297.69776 * 8 7 6 33 33 H 1.09010 * 109.51868 * 177.51610 * 8 7 6 34 34 H 1.09004 * 109.46744 * 308.31991 * 12 11 9 35 35 H 1.09000 * 109.46745 * 68.31271 * 12 11 9 36 36 H 1.08999 * 109.46926 * 188.31653 * 12 11 9 37 37 H 1.08995 * 109.47115 * 78.58492 * 13 11 9 38 38 H 1.09000 * 109.46730 * 318.59210 * 13 11 9 39 39 H 0.97001 * 119.99529 * 184.98421 * 18 17 15 40 40 H 1.08999 * 117.49965 * 214.96742 * 23 14 13 41 41 H 1.08999 * 117.49574 * 0.02562 * 23 14 13 42 42 H 1.09000 * 117.49977 * 359.97194 * 24 14 13 43 43 H 1.08998 * 117.50086 * 144.99691 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3446 2.0006 -0.5118 5 6 2.2254 1.7711 1.4424 6 8 3.1436 0.8909 2.0938 7 6 4.4384 0.8479 1.4905 8 6 4.3121 0.3452 0.0500 9 6 3.3607 1.2646 -0.7219 10 1 3.7801 2.2696 -0.7680 11 7 3.1743 0.7469 -2.0839 12 6 2.8344 -0.6822 -2.0621 13 6 4.3655 0.9921 -2.9079 14 6 3.9941 0.8788 -4.3878 15 6 2.9470 1.8490 -4.8713 16 1 2.1935 1.5245 -5.5736 17 6 2.9546 3.1522 -4.4214 18 7 3.9785 3.6033 -3.7300 19 14 1.5108 4.2773 -4.7939 20 1 0.4942 3.5340 -5.5809 21 1 0.9059 4.7445 -3.5207 22 1 1.9840 5.4477 -5.5759 23 6 5.1034 0.4906 -5.3673 24 6 4.0071 -0.5168 -5.0146 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.6306 2.7830 1.4411 29 1 1.2735 1.7612 1.9734 30 1 4.8725 1.8478 1.4899 31 1 5.0807 0.1731 2.0563 32 1 3.9158 -0.6702 0.0520 33 1 5.2927 0.3535 -0.4259 34 1 3.5638 -1.2199 -1.4563 35 1 1.8403 -0.8126 -1.6346 36 1 2.8470 -1.0741 -3.0791 37 1 5.1314 0.2546 -2.6681 38 1 4.7481 1.9924 -2.7048 39 1 3.9527 4.4962 -3.3519 40 1 5.0759 0.9367 -6.3615 41 1 6.0981 0.3154 -4.9575 42 1 4.2807 -1.3543 -4.3728 43 1 3.2584 -0.7333 -5.7766 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880434621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:24 Heat of formation + Delta-G solvation = -58.688820 kcal Electronic energy + Delta-G solvation = -22967.347686 eV Core-core repulsion = 19820.787590 eV Total energy + Delta-G solvation = -3146.560096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.15463 -38.95266 -37.89907 -36.60180 -34.04164 -32.21094 -31.44154 -28.36219 -27.44541 -27.24791 -26.30750 -24.36702 -23.11109 -22.91766 -20.87106 -20.56220 -18.07176 -17.58207 -17.45970 -16.82578 -16.60244 -16.52749 -16.14689 -15.70636 -15.32822 -15.09587 -14.80673 -14.62240 -14.25054 -13.93933 -13.47974 -13.18255 -13.10657 -12.83029 -12.74451 -12.64045 -12.34276 -12.20905 -12.09944 -12.02043 -11.84360 -11.62658 -11.48621 -11.10421 -10.96068 -10.90396 -10.46263 -9.93783 -9.79824 -8.66171 -7.94473 -5.99836 1.42377 1.46589 1.55714 2.51635 2.75830 3.05692 3.12063 3.33415 3.76566 3.80286 3.89195 3.99141 4.23493 4.36953 4.38761 4.43301 4.50681 4.53024 4.56676 4.64952 4.69202 4.73645 4.79234 4.81587 4.87964 4.90778 4.91732 4.95797 5.03329 5.05146 5.17586 5.33423 5.45297 5.53248 5.56989 5.68468 6.08266 6.12108 6.41719 6.46755 6.63149 6.73482 6.98761 7.60932 9.07615 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017296 B = 0.007718 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.473195 B = 3627.137182 C = 4127.792687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.376 6.376 3 C 0.070 3.930 4 H 0.063 0.937 5 C 0.045 3.955 6 O -0.386 6.386 7 C 0.068 3.932 8 C -0.177 4.177 9 C 0.091 3.909 10 H 0.071 0.929 11 N -0.513 5.513 12 C 0.022 3.978 13 C 0.109 3.891 14 C 0.043 3.957 15 C -0.481 4.481 16 H 0.037 0.963 17 C 0.047 3.953 18 N -0.897 5.897 19 Si 0.936 3.064 20 H -0.278 1.278 21 H -0.279 1.279 22 H -0.288 1.288 23 C -0.207 4.207 24 C -0.194 4.194 25 H 0.051 0.949 26 H 0.034 0.966 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.055 0.945 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.019 0.981 35 H 0.087 0.913 36 H 0.050 0.950 37 H -0.009 1.009 38 H 0.092 0.908 39 H 0.257 0.743 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 -4.463 11.093 12.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.295 6.295 3 C 0.011 3.989 4 H 0.081 0.919 5 C -0.032 4.032 6 O -0.305 6.305 7 C -0.009 4.009 8 C -0.217 4.217 9 C -0.018 4.018 10 H 0.090 0.910 11 N -0.234 5.234 12 C -0.126 4.126 13 C -0.019 4.019 14 C 0.042 3.958 15 C -0.518 4.518 16 H 0.056 0.944 17 C -0.153 4.153 18 N -0.536 5.536 19 Si 0.763 3.237 20 H -0.203 1.203 21 H -0.204 1.204 22 H -0.214 1.214 23 C -0.246 4.246 24 C -0.231 4.231 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.128 0.872 30 H 0.074 0.926 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.009 0.991 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.009 -4.292 11.053 12.233 hybrid contribution -0.011 0.597 -0.591 0.840 sum -3.020 -3.696 10.462 11.499 Atomic orbital electron populations 1.22875 0.80723 1.03435 1.00058 1.87964 1.20341 1.26761 1.94424 1.22756 0.94812 0.85798 0.95490 0.91945 1.23139 0.94672 0.93126 0.92261 1.87879 1.22764 1.66053 1.53798 1.22589 0.84676 1.01203 0.92422 1.22750 0.99931 1.01622 0.97359 1.21780 0.93578 0.98109 0.88338 0.91050 1.61808 1.36705 1.16122 1.08738 1.22781 1.01785 0.87903 1.00128 1.21515 0.88348 1.00146 0.91849 1.19025 0.94995 0.91309 0.90497 1.20511 1.11513 0.94213 1.25554 0.94442 1.25237 0.96702 0.98139 0.95184 1.69933 1.29129 1.17598 1.36906 0.85876 0.81034 0.78977 0.77784 1.20298 1.20425 1.21426 1.22946 0.93911 1.06171 1.01574 1.22864 1.01849 0.94042 1.04331 0.93006 0.94741 0.88527 0.91500 0.87180 0.92649 0.87377 0.90599 0.91938 0.96309 0.89456 0.93115 0.99127 0.89050 0.93347 0.91448 0.90897 0.89976 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.59 113.37 1.20 1.81 16 2 O -0.38 -11.58 6.36 -141.94 -0.90 -12.48 16 3 C 0.07 2.21 2.63 30.68 0.08 2.29 16 4 H 0.06 2.10 7.79 -2.38 -0.02 2.09 16 5 C 0.05 1.19 6.49 72.01 0.47 1.65 16 6 O -0.39 -10.97 10.70 -141.94 -1.52 -12.49 16 7 C 0.07 1.78 6.84 72.01 0.49 2.27 16 8 C -0.18 -5.53 4.54 30.68 0.14 -5.39 16 9 C 0.09 3.28 2.23 45.03 0.10 3.38 16 10 H 0.07 2.82 7.75 -2.39 -0.02 2.80 16 11 N -0.51 -21.37 4.44 -896.35 -3.98 -25.35 16 12 C 0.02 0.82 8.35 127.69 1.07 1.88 16 13 C 0.11 5.02 3.84 86.30 0.33 5.35 16 14 C 0.04 2.09 1.70 -52.93 -0.09 2.00 16 15 C -0.48 -26.20 8.83 25.60 0.23 -25.98 16 16 H 0.04 2.11 7.83 -2.91 -0.02 2.08 16 17 C 0.05 2.53 5.26 84.65 0.45 2.97 16 18 N -0.90 -48.46 10.85 21.45 0.23 -48.23 16 19 Si 0.94 43.17 29.55 68.60 2.03 45.19 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 23 C -0.21 -9.52 9.94 30.60 0.30 -9.22 16 24 C -0.19 -8.41 8.34 30.60 0.26 -8.15 16 25 H 0.05 1.05 7.86 -2.39 -0.02 1.03 16 26 H 0.03 0.89 8.09 -2.39 -0.02 0.87 16 27 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.11 2.41 7.86 -2.38 -0.02 2.39 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 31 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.08 2.50 5.65 -2.39 -0.01 2.48 16 33 H 0.06 2.00 7.45 -2.38 -0.02 1.98 16 34 H 0.02 0.67 5.62 -2.39 -0.01 0.66 16 35 H 0.09 3.20 5.16 -2.39 -0.01 3.18 16 36 H 0.05 2.02 5.07 -2.39 -0.01 2.01 16 37 H -0.01 -0.41 7.55 -2.39 -0.02 -0.43 16 38 H 0.09 4.69 5.32 -2.39 -0.01 4.68 16 39 H 0.26 13.29 8.32 -92.71 -0.77 12.52 16 40 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 41 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 42 H 0.08 3.25 7.32 -2.39 -0.02 3.24 16 43 H 0.07 3.08 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -58.56 324.44 1.86 -56.70 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.98 Total: 21.76 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 5.02 Total: -25.12 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -3.75 Total: -73.58 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -2.42 Total: -24.96 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -58.56 1.86 -56.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880434621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.987 kcal (2) G-P(sol) polarization free energy of solvation -58.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds