Wall clock time and date at job start Mon Mar 30 2020 01:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99820 * 2 1 4 4 H 1.09001 * 109.57435 * 330.14919 * 3 2 1 5 5 C 1.53282 * 109.64544 * 90.35799 * 3 2 1 6 6 O 1.42903 * 109.46089 * 177.47037 * 5 3 2 7 7 C 1.42901 * 114.09520 * 298.84478 * 6 5 3 8 8 C 1.53089 * 109.41976 * 61.15878 * 7 6 5 9 9 C 1.53177 * 109.16286 * 302.38856 * 8 7 6 10 10 H 1.08997 * 109.54398 * 297.11418 * 9 8 7 11 11 N 1.46897 * 109.54204 * 176.93104 * 9 8 7 12 12 C 1.46900 * 111.00446 * 306.22531 * 11 9 8 13 13 C 1.46901 * 111.00079 * 70.18360 * 11 9 8 14 14 C 1.53000 * 109.47587 * 164.11176 * 13 11 9 15 15 C 1.50699 * 115.54819 * 305.50641 * 14 13 11 16 16 H 1.08003 * 120.00049 * 144.40896 * 15 14 13 17 17 C 1.37875 * 120.00050 * 324.40794 * 15 14 13 18 18 N 1.31517 * 120.00073 * 349.97675 * 17 15 14 19 19 Si 1.86803 * 120.00037 * 169.98101 * 17 15 14 20 20 H 1.48497 * 109.46982 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47029 * 119.99716 * 19 17 15 22 22 H 1.48495 * 109.46917 * 239.99630 * 19 17 15 23 23 C 1.52993 * 117.49704 * 159.83120 * 14 13 11 24 24 C 1.53003 * 117.49702 * 91.17277 * 14 13 11 25 25 H 1.09000 * 109.47030 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47197 * 300.00440 * 1 2 3 27 27 H 1.09006 * 109.46930 * 60.00550 * 1 2 3 28 28 H 1.09007 * 109.45166 * 57.47137 * 5 3 2 29 29 H 1.08998 * 109.45720 * 297.46980 * 5 3 2 30 30 H 1.09003 * 109.48262 * 301.17312 * 7 6 5 31 31 H 1.09003 * 109.49006 * 181.14708 * 7 6 5 32 32 H 1.09003 * 109.52375 * 182.47972 * 8 7 6 33 33 H 1.09003 * 109.52333 * 62.29533 * 8 7 6 34 34 H 1.08998 * 109.47198 * 69.37158 * 12 11 9 35 35 H 1.09000 * 109.46881 * 189.37685 * 12 11 9 36 36 H 1.09001 * 109.46850 * 309.37702 * 12 11 9 37 37 H 1.09002 * 109.46701 * 284.11628 * 13 11 9 38 38 H 1.09002 * 109.46996 * 44.10706 * 13 11 9 39 39 H 0.96992 * 120.00157 * 185.03121 * 18 17 15 40 40 H 1.08998 * 117.50495 * 0.02562 * 23 14 13 41 41 H 1.09010 * 117.49830 * 145.02470 * 23 14 13 42 42 H 1.08994 * 117.49897 * 214.98502 * 24 14 13 43 43 H 1.09003 * 117.49809 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 2.0014 -0.5112 5 6 2.2280 1.7726 1.4436 6 8 2.8630 3.0528 1.4390 7 6 4.1498 3.0635 0.8177 8 6 4.0101 2.6499 -0.6496 9 6 3.3607 1.2645 -0.7219 10 1 4.0092 0.5324 -0.2408 11 7 3.1554 0.8908 -2.1276 12 6 2.4042 1.9299 -2.8444 13 6 4.4364 0.6146 -2.7914 14 6 4.1817 -0.1389 -4.0984 15 6 3.3694 -1.4020 -3.9726 16 1 2.6771 -1.6789 -4.7540 17 6 3.5099 -2.2041 -2.8600 18 7 4.4847 -1.9795 -2.0062 19 14 2.3158 -3.6101 -2.5653 20 1 1.3175 -3.6501 -3.6639 21 1 3.0619 -4.8935 -2.5269 22 1 1.6184 -3.4040 -1.2706 23 6 5.2866 -0.1119 -5.1562 24 6 4.0021 0.6928 -5.3699 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 2.8607 1.0548 1.9658 29 1 1.2659 1.8458 1.9506 30 1 4.8077 2.3627 1.3318 31 1 4.5725 4.0667 0.8739 32 1 4.9957 2.6149 -1.1137 33 1 3.3851 3.3729 -1.1739 34 1 3.0268 2.8178 -2.9543 35 1 2.1220 1.5596 -3.8300 36 1 1.5063 2.1833 -2.2806 37 1 4.9439 1.5549 -3.0071 38 1 5.0610 0.0065 -2.1371 39 1 4.6284 -2.5865 -1.2635 40 1 6.1952 0.4424 -4.9211 41 1 5.4258 -1.0076 -5.7617 42 1 3.2968 0.3263 -6.1157 43 1 4.0651 1.7769 -5.2753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880434625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:28 Heat of formation + Delta-G solvation = -45.737751 kcal Electronic energy + Delta-G solvation = -23000.281492 eV Core-core repulsion = 19854.282996 eV Total energy + Delta-G solvation = -3145.998496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.77647 -37.27586 -36.84981 -35.09952 -31.89176 -30.90026 -30.07708 -26.71132 -26.22711 -25.41712 -24.80687 -22.88288 -21.90346 -21.07061 -19.35852 -18.71309 -16.61331 -16.30776 -15.95413 -15.71151 -15.07319 -14.75518 -14.53679 -14.03049 -13.88036 -13.63655 -13.34333 -12.92377 -12.87153 -12.63833 -12.26764 -11.50652 -11.41372 -11.30632 -11.10075 -10.91263 -10.83072 -10.77928 -10.72136 -10.38175 -10.34426 -9.98400 -9.85780 -9.76165 -9.24535 -8.88480 -8.80778 -8.52459 -7.86555 -7.06092 -5.79188 -3.79760 3.43618 3.54329 3.54809 3.79956 4.31238 4.59074 4.67187 5.01080 5.09646 5.23275 5.25159 5.37994 5.45184 5.51947 5.60759 5.71546 5.74978 5.76931 5.87615 5.94787 5.99817 6.05373 6.12454 6.17537 6.19825 6.24276 6.46974 6.55610 6.66110 6.71585 6.76596 6.86956 7.02112 7.17076 7.25452 7.41249 7.66094 7.71277 8.12750 8.24151 8.29566 8.67033 9.12650 9.80850 11.24122 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016579 B = 0.008857 C = 0.006792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.431074 B = 3160.617617 C = 4121.576615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.348 6.348 3 C 0.069 3.931 4 H 0.064 0.936 5 C 0.040 3.960 6 O -0.383 6.383 7 C 0.063 3.937 8 C -0.189 4.189 9 C 0.092 3.908 10 H 0.093 0.907 11 N -0.482 5.482 12 C 0.026 3.974 13 C 0.104 3.896 14 C 0.072 3.928 15 C -0.475 4.475 16 H 0.051 0.949 17 C 0.096 3.904 18 N -0.875 5.875 19 Si 0.889 3.111 20 H -0.279 1.279 21 H -0.292 1.292 22 H -0.279 1.279 23 C -0.209 4.209 24 C -0.219 4.219 25 H 0.081 0.919 26 H 0.030 0.970 27 H 0.040 0.960 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.008 0.992 35 H 0.072 0.928 36 H 0.045 0.955 37 H -0.015 1.015 38 H 0.115 0.885 39 H 0.255 0.745 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 8.522 5.967 10.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.266 6.266 3 C 0.009 3.991 4 H 0.082 0.918 5 C -0.037 4.037 6 O -0.302 6.302 7 C -0.014 4.014 8 C -0.229 4.229 9 C -0.017 4.017 10 H 0.111 0.889 11 N -0.202 5.202 12 C -0.123 4.123 13 C -0.023 4.023 14 C 0.071 3.929 15 C -0.512 4.512 16 H 0.069 0.931 17 C -0.107 4.107 18 N -0.512 5.512 19 Si 0.718 3.282 20 H -0.204 1.204 21 H -0.219 1.219 22 H -0.205 1.205 23 C -0.248 4.248 24 C -0.256 4.256 25 H 0.099 0.901 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.027 0.973 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.003 0.997 38 H 0.133 0.867 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.435 8.022 6.235 10.725 hybrid contribution -0.231 0.046 -0.127 0.267 sum -3.666 8.068 6.109 10.763 Atomic orbital electron populations 1.22723 0.82381 1.02316 0.98963 1.88125 1.18272 1.25673 1.94528 1.22807 0.95993 0.85713 0.94547 0.91848 1.23127 0.98083 0.85341 0.97168 1.87878 1.32590 1.30477 1.79214 1.22568 0.84758 1.01690 0.92388 1.22997 1.02620 0.99808 0.97427 1.21786 0.94129 0.93818 0.92012 0.88922 1.61787 1.20823 1.39011 0.98603 1.22452 0.97026 0.92775 1.00040 1.21788 0.88835 0.94473 0.97184 1.18918 0.94780 0.94399 0.84791 1.20259 1.22170 1.04818 1.03956 0.93051 1.24641 0.94417 0.96781 0.94862 1.69738 1.29763 1.36351 1.15392 0.86613 0.81783 0.81440 0.78373 1.20374 1.21940 1.20509 1.22975 0.91671 1.00946 1.09185 1.22930 1.01203 0.95682 1.05811 0.90090 0.95191 0.94140 0.92300 0.89281 0.92956 0.89196 0.90362 0.91005 0.97346 0.90885 0.93592 0.99663 0.86691 0.93444 0.92181 0.90567 0.91035 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.83 101.05 1.09 1.60 16 2 O -0.35 -6.71 10.28 -35.23 -0.36 -7.07 16 3 C 0.07 1.16 2.13 -26.49 -0.06 1.11 16 4 H 0.06 1.05 5.91 -51.93 -0.31 0.75 16 5 C 0.04 0.59 6.48 37.30 0.24 0.84 16 6 O -0.38 -5.69 10.77 -35.23 -0.38 -6.07 16 7 C 0.06 0.85 6.84 37.20 0.25 1.11 16 8 C -0.19 -2.91 4.73 -26.59 -0.13 -3.04 16 9 C 0.09 1.72 1.94 -67.53 -0.13 1.58 16 10 H 0.09 1.95 7.87 -51.93 -0.41 1.54 16 11 N -0.48 -10.19 4.20 -234.66 -0.99 -11.18 16 12 C 0.03 0.48 8.19 60.06 0.49 0.97 16 13 C 0.10 2.39 3.51 -3.82 -0.01 2.37 16 14 C 0.07 1.77 1.58 -155.66 -0.25 1.52 16 15 C -0.48 -12.99 8.73 -34.44 -0.30 -13.29 16 16 H 0.05 1.44 7.83 -52.48 -0.41 1.03 16 17 C 0.10 2.62 5.19 -17.82 -0.09 2.53 16 18 N -0.88 -23.93 10.74 55.43 0.60 -23.33 16 19 Si 0.89 21.87 29.55 -169.99 -5.02 16.85 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 C -0.21 -4.81 9.96 -26.70 -0.27 -5.08 16 24 C -0.22 -4.81 8.58 -26.69 -0.23 -5.04 16 25 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.03 0.37 7.98 -51.93 -0.41 -0.04 16 27 H 0.04 0.60 8.09 -51.93 -0.42 0.18 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.15 7.98 -51.93 -0.41 0.73 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.22 7.23 -51.93 -0.38 0.84 16 33 H 0.07 1.10 6.38 -51.93 -0.33 0.77 16 34 H 0.01 0.15 6.61 -51.93 -0.34 -0.20 16 35 H 0.07 1.48 6.69 -51.93 -0.35 1.13 16 36 H 0.05 0.79 6.05 -51.93 -0.31 0.48 16 37 H -0.01 -0.32 7.23 -51.93 -0.38 -0.69 16 38 H 0.12 2.93 5.66 -51.93 -0.29 2.64 16 39 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.08 1.78 8.14 -51.92 -0.42 1.36 16 42 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -28.67 330.50 -7.83 -36.50 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.27 Total: 2.15 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 0.62 Total: -12.82 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: -0.39 Total: -34.51 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.74 Total: -13.14 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.67 -7.83 -36.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880434625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.237 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds