Wall clock time and date at job start Mon Mar 30 2020 01:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99820 * 2 1 4 4 H 1.09001 * 109.57435 * 330.14919 * 3 2 1 5 5 C 1.53282 * 109.64544 * 90.35799 * 3 2 1 6 6 O 1.42903 * 109.46089 * 177.47037 * 5 3 2 7 7 C 1.42901 * 114.09520 * 298.84478 * 6 5 3 8 8 C 1.53089 * 109.41976 * 61.15878 * 7 6 5 9 9 C 1.53177 * 109.16286 * 302.38856 * 8 7 6 10 10 H 1.08997 * 109.54398 * 297.11418 * 9 8 7 11 11 N 1.46897 * 109.54204 * 176.93104 * 9 8 7 12 12 C 1.46900 * 111.00446 * 306.22531 * 11 9 8 13 13 C 1.46901 * 111.00079 * 70.18360 * 11 9 8 14 14 C 1.53000 * 109.47587 * 164.11176 * 13 11 9 15 15 C 1.50699 * 115.54819 * 305.50641 * 14 13 11 16 16 H 1.08003 * 120.00049 * 144.40896 * 15 14 13 17 17 C 1.37875 * 120.00050 * 324.40794 * 15 14 13 18 18 N 1.31517 * 120.00073 * 349.97675 * 17 15 14 19 19 Si 1.86803 * 120.00037 * 169.98101 * 17 15 14 20 20 H 1.48497 * 109.46982 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47029 * 119.99716 * 19 17 15 22 22 H 1.48495 * 109.46917 * 239.99630 * 19 17 15 23 23 C 1.52993 * 117.49704 * 159.83120 * 14 13 11 24 24 C 1.53003 * 117.49702 * 91.17277 * 14 13 11 25 25 H 1.09000 * 109.47030 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47197 * 300.00440 * 1 2 3 27 27 H 1.09006 * 109.46930 * 60.00550 * 1 2 3 28 28 H 1.09007 * 109.45166 * 57.47137 * 5 3 2 29 29 H 1.08998 * 109.45720 * 297.46980 * 5 3 2 30 30 H 1.09003 * 109.48262 * 301.17312 * 7 6 5 31 31 H 1.09003 * 109.49006 * 181.14708 * 7 6 5 32 32 H 1.09003 * 109.52375 * 182.47972 * 8 7 6 33 33 H 1.09003 * 109.52333 * 62.29533 * 8 7 6 34 34 H 1.08998 * 109.47198 * 69.37158 * 12 11 9 35 35 H 1.09000 * 109.46881 * 189.37685 * 12 11 9 36 36 H 1.09001 * 109.46850 * 309.37702 * 12 11 9 37 37 H 1.09002 * 109.46701 * 284.11628 * 13 11 9 38 38 H 1.09002 * 109.46996 * 44.10706 * 13 11 9 39 39 H 0.96992 * 120.00157 * 185.03121 * 18 17 15 40 40 H 1.08998 * 117.50495 * 0.02562 * 23 14 13 41 41 H 1.09010 * 117.49830 * 145.02470 * 23 14 13 42 42 H 1.08994 * 117.49897 * 214.98502 * 24 14 13 43 43 H 1.09003 * 117.49809 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 2.0014 -0.5112 5 6 2.2280 1.7726 1.4436 6 8 2.8630 3.0528 1.4390 7 6 4.1498 3.0635 0.8177 8 6 4.0101 2.6499 -0.6496 9 6 3.3607 1.2645 -0.7219 10 1 4.0092 0.5324 -0.2408 11 7 3.1554 0.8908 -2.1276 12 6 2.4042 1.9299 -2.8444 13 6 4.4364 0.6146 -2.7914 14 6 4.1817 -0.1389 -4.0984 15 6 3.3694 -1.4020 -3.9726 16 1 2.6771 -1.6789 -4.7540 17 6 3.5099 -2.2041 -2.8600 18 7 4.4847 -1.9795 -2.0062 19 14 2.3158 -3.6101 -2.5653 20 1 1.3175 -3.6501 -3.6639 21 1 3.0619 -4.8935 -2.5269 22 1 1.6184 -3.4040 -1.2706 23 6 5.2866 -0.1119 -5.1562 24 6 4.0021 0.6928 -5.3699 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 2.8607 1.0548 1.9658 29 1 1.2659 1.8458 1.9506 30 1 4.8077 2.3627 1.3318 31 1 4.5725 4.0667 0.8739 32 1 4.9957 2.6149 -1.1137 33 1 3.3851 3.3729 -1.1739 34 1 3.0268 2.8178 -2.9543 35 1 2.1220 1.5596 -3.8300 36 1 1.5063 2.1833 -2.2806 37 1 4.9439 1.5549 -3.0071 38 1 5.0610 0.0065 -2.1371 39 1 4.6284 -2.5865 -1.2635 40 1 6.1952 0.4424 -4.9211 41 1 5.4258 -1.0076 -5.7617 42 1 3.2968 0.3263 -6.1157 43 1 4.0651 1.7769 -5.2753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880434625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:28 Heat of formation + Delta-G solvation = -64.243615 kcal Electronic energy + Delta-G solvation = -23001.083966 eV Core-core repulsion = 19854.282996 eV Total energy + Delta-G solvation = -3146.800970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.08650 -38.92746 -38.14086 -36.69910 -33.95900 -32.24782 -31.30136 -28.36637 -27.44037 -27.35440 -26.32656 -24.09477 -23.34928 -22.87766 -20.86622 -20.50719 -18.12061 -17.71192 -17.48726 -17.01111 -16.59484 -16.31765 -16.06884 -15.64456 -15.33351 -15.12459 -14.90972 -14.38651 -14.28145 -14.02200 -13.75512 -13.21759 -13.04398 -12.79620 -12.69810 -12.63873 -12.35762 -12.25757 -12.18882 -12.10555 -12.05575 -11.75200 -11.37326 -11.05554 -10.96008 -10.85879 -10.44005 -10.10602 -9.82978 -8.61871 -7.85802 -5.91560 1.43556 1.51539 1.56285 2.55552 2.63568 3.08214 3.13531 3.37016 3.75090 3.80586 3.90924 4.03946 4.11786 4.19333 4.31958 4.39973 4.44422 4.51264 4.55492 4.59757 4.65950 4.68931 4.72046 4.78228 4.81349 4.84337 4.91878 4.95647 4.99418 5.04184 5.18524 5.20240 5.25569 5.45819 5.58911 5.72149 6.03170 6.11897 6.44005 6.50990 6.65638 6.76802 7.05822 7.69854 9.14044 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016579 B = 0.008857 C = 0.006792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.431074 B = 3160.617617 C = 4121.576615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.387 6.387 3 C 0.071 3.929 4 H 0.069 0.931 5 C 0.047 3.953 6 O -0.385 6.385 7 C 0.064 3.936 8 C -0.179 4.179 9 C 0.092 3.908 10 H 0.059 0.941 11 N -0.505 5.505 12 C 0.032 3.968 13 C 0.120 3.880 14 C 0.043 3.957 15 C -0.491 4.491 16 H 0.034 0.966 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.933 3.067 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.283 1.283 23 C -0.210 4.210 24 C -0.195 4.195 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.111 0.889 30 H 0.054 0.946 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.024 0.976 35 H 0.055 0.945 36 H 0.060 0.940 37 H -0.005 1.005 38 H 0.085 0.915 39 H 0.252 0.748 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.808 10.190 6.578 12.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.305 6.305 3 C 0.013 3.987 4 H 0.087 0.913 5 C -0.030 4.030 6 O -0.304 6.304 7 C -0.013 4.013 8 C -0.218 4.218 9 C -0.017 4.017 10 H 0.077 0.923 11 N -0.226 5.226 12 C -0.116 4.116 13 C -0.008 4.008 14 C 0.042 3.958 15 C -0.528 4.528 16 H 0.052 0.948 17 C -0.138 4.138 18 N -0.523 5.523 19 Si 0.761 3.239 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.209 1.209 23 C -0.249 4.249 24 C -0.232 4.232 25 H 0.097 0.903 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.129 0.871 30 H 0.072 0.928 31 H 0.137 0.863 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.013 0.987 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.039 9.696 6.843 12.536 hybrid contribution -0.049 -0.490 -0.349 0.603 sum -4.088 9.206 6.494 11.985 Atomic orbital electron populations 1.22873 0.80604 1.02780 1.00515 1.88069 1.20451 1.27169 1.94857 1.22839 0.94902 0.85103 0.95878 0.91297 1.23083 0.99123 0.85210 0.95609 1.87884 1.33062 1.30312 1.79152 1.22681 0.84446 1.03383 0.90761 1.22878 1.02074 0.97779 0.99080 1.21749 0.94959 0.94634 0.90407 0.92316 1.61659 1.20193 1.40833 0.99912 1.22374 0.97546 0.92553 0.99112 1.21438 0.89472 0.94023 0.95821 1.19029 0.95749 0.94509 0.86506 1.20396 1.22416 1.06295 1.03711 0.94795 1.25090 0.95402 0.98391 0.94894 1.69863 1.30394 1.36669 1.15402 0.85925 0.80376 0.79787 0.77763 1.20447 1.21562 1.20905 1.22966 0.92491 1.01124 1.08289 1.22877 1.00040 0.96536 1.03763 0.90290 0.92074 0.94047 0.92876 0.87059 0.92809 0.86308 0.90736 0.90419 0.95796 0.92594 0.92145 0.98671 0.89708 0.93786 0.90736 0.91553 0.91247 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.83 113.37 1.23 2.06 16 2 O -0.39 -14.67 10.28 -148.98 -1.53 -16.20 16 3 C 0.07 2.34 2.13 30.75 0.07 2.40 16 4 H 0.07 2.14 5.91 -2.39 -0.01 2.13 16 5 C 0.05 1.29 6.48 72.08 0.47 1.76 16 6 O -0.39 -10.38 10.77 -148.98 -1.60 -11.99 16 7 C 0.06 1.57 6.84 72.01 0.49 2.06 16 8 C -0.18 -5.19 4.73 30.68 0.15 -5.04 16 9 C 0.09 3.37 1.94 45.04 0.09 3.46 16 10 H 0.06 2.53 7.87 -2.39 -0.02 2.51 16 11 N -0.51 -21.17 4.20 -896.34 -3.77 -24.94 16 12 C 0.03 1.17 8.19 127.69 1.05 2.21 16 13 C 0.12 5.49 3.51 86.30 0.30 5.79 16 14 C 0.04 2.10 1.58 -52.93 -0.08 2.02 16 15 C -0.49 -27.18 8.73 25.60 0.22 -26.95 16 16 H 0.03 1.94 7.83 -2.91 -0.02 1.92 16 17 C 0.06 3.53 5.19 84.65 0.44 3.96 16 18 N -0.89 -49.34 10.74 21.45 0.23 -49.11 16 19 Si 0.93 45.44 29.55 68.60 2.03 47.47 16 20 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 23 C -0.21 -9.53 9.96 30.62 0.30 -9.22 16 24 C -0.19 -8.32 8.58 30.62 0.26 -8.06 16 25 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.06 1.36 7.98 -2.39 -0.02 1.34 16 27 H 0.04 1.16 8.09 -2.38 -0.02 1.14 16 28 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.11 2.53 7.98 -2.39 -0.02 2.51 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.07 2.21 7.23 -2.39 -0.02 2.19 16 33 H 0.08 2.17 6.38 -2.39 -0.02 2.16 16 34 H 0.02 0.78 6.61 -2.39 -0.02 0.77 16 35 H 0.06 2.20 6.69 -2.39 -0.02 2.18 16 36 H 0.06 1.98 6.05 -2.39 -0.01 1.96 16 37 H 0.00 -0.19 7.23 -2.39 -0.02 -0.21 16 38 H 0.08 4.41 5.66 -2.39 -0.01 4.40 16 39 H 0.25 13.76 8.32 -92.71 -0.77 12.99 16 40 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 42 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 43 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -61.16 330.50 1.30 -59.85 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.97 Total: 18.46 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 4.98 Total: -23.54 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -3.54 Total: -74.05 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -3.14 Total: -28.19 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -61.16 1.30 -59.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880434625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.393 kcal (2) G-P(sol) polarization free energy of solvation -61.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds