Wall clock time and date at job start Mon Mar 30 2020 01:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00152 * 2 1 4 4 H 1.08996 * 109.57339 * 29.83510 * 3 2 1 5 5 C 1.53098 * 109.51867 * 269.68275 * 3 2 1 6 6 O 1.42902 * 109.41100 * 182.48307 * 5 3 2 7 7 C 1.42904 * 114.09564 * 61.16229 * 6 5 3 8 8 C 1.53090 * 109.41232 * 298.83440 * 7 6 5 9 9 C 1.53172 * 109.52190 * 149.99641 * 3 2 1 10 10 H 1.08995 * 109.61696 * 56.97835 * 9 3 2 11 11 N 1.46894 * 109.54500 * 296.75004 * 9 3 2 12 12 C 1.46903 * 111.00076 * 309.12560 * 11 9 3 13 13 C 1.46902 * 111.00042 * 73.08086 * 11 9 3 14 14 C 1.52994 * 109.47127 * 162.88990 * 13 11 9 15 15 C 1.50699 * 115.55224 * 304.05182 * 14 13 11 16 16 H 1.08002 * 119.99601 * 121.76569 * 15 14 13 17 17 C 1.37871 * 120.00249 * 301.48877 * 15 14 13 18 18 N 1.31511 * 120.00321 * 171.73914 * 17 15 14 19 19 Si 1.86806 * 119.99901 * 351.74067 * 17 15 14 20 20 H 1.48497 * 109.47233 * 93.54620 * 19 17 15 21 21 H 1.48494 * 109.47123 * 213.54938 * 19 17 15 22 22 H 1.48507 * 109.46908 * 333.54838 * 19 17 15 23 23 C 1.53008 * 117.51867 * 89.75792 * 14 13 11 24 24 C 1.53000 * 60.00117 * 107.48025 * 23 14 13 25 25 H 1.09001 * 109.47568 * 300.00506 * 1 2 3 26 26 H 1.08999 * 109.46962 * 60.00176 * 1 2 3 27 27 H 1.08993 * 109.47409 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.48115 * 62.50103 * 5 3 2 29 29 H 1.09001 * 109.48653 * 302.47454 * 5 3 2 30 30 H 1.09006 * 109.47832 * 178.85981 * 7 6 5 31 31 H 1.08993 * 109.48302 * 58.81969 * 7 6 5 32 32 H 1.08999 * 109.52812 * 297.70754 * 8 7 6 33 33 H 1.09005 * 109.52324 * 177.51933 * 8 7 6 34 34 H 1.08998 * 109.47051 * 190.68161 * 12 11 9 35 35 H 1.08998 * 109.46973 * 310.67750 * 12 11 9 36 36 H 1.08995 * 109.47191 * 70.67678 * 12 11 9 37 37 H 1.08998 * 109.47191 * 42.88409 * 13 11 9 38 38 H 1.09002 * 109.46851 * 282.88911 * 13 11 9 39 39 H 0.96997 * 120.00006 * 180.02562 * 18 17 15 40 40 H 1.08996 * 117.49517 * 214.97080 * 23 14 13 41 41 H 1.08997 * 117.49820 * 359.97438 * 23 14 13 42 42 H 1.09007 * 117.49572 * 252.51316 * 24 23 14 43 43 H 1.08998 * 117.50404 * 107.48957 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 2.0014 0.5109 5 6 2.2256 1.7695 -1.4430 6 8 2.8598 3.0501 -1.4404 7 6 4.1472 3.0624 -0.8204 8 6 4.0090 2.6503 0.6475 9 6 3.3606 1.2645 0.7219 10 1 4.0098 0.5320 0.2424 11 7 3.1550 0.8930 2.1281 12 6 2.1230 1.7340 2.7494 13 6 2.8184 -0.5315 2.2525 14 6 3.0284 -0.9807 3.6999 15 6 4.4059 -0.7403 4.2617 16 1 4.5297 -0.1348 5.1475 17 6 5.5075 -1.2981 3.6484 18 7 6.7178 -0.9601 4.0367 19 14 5.2812 -2.5338 2.2659 20 1 5.3154 -1.8275 0.9601 21 1 6.3748 -3.5371 2.3148 22 1 3.9732 -3.2191 2.4238 23 6 1.8425 -0.8542 4.6584 24 6 2.2842 -2.2338 4.1658 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.2630 1.8416 -1.9492 29 1 2.8581 1.0516 -1.9652 30 1 4.5689 4.0660 -0.8780 31 1 4.8049 2.3615 -1.3343 32 1 3.3841 3.3734 1.1717 33 1 4.9951 2.6164 1.1108 34 1 2.1223 1.5716 3.8272 35 1 2.3344 2.7826 2.5401 36 1 1.1467 1.4717 2.3418 37 1 3.4612 -1.1156 1.5939 38 1 1.7762 -0.6844 1.9722 39 1 7.4928 -1.3523 3.6049 40 1 2.0587 -0.5971 5.6953 41 1 0.9125 -0.4506 4.2580 42 1 1.6447 -2.7379 3.4411 43 1 2.7910 -2.8843 4.8785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880434627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:30 Heat of formation + Delta-G solvation = -46.457618 kcal Electronic energy + Delta-G solvation = -23008.214621 eV Core-core repulsion = 19862.184909 eV Total energy + Delta-G solvation = -3146.029712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.14546 -37.65131 -37.05655 -35.29312 -31.94093 -31.39309 -30.21961 -27.39410 -26.57296 -25.63437 -24.77563 -23.06498 -22.12960 -21.38790 -19.60597 -18.79944 -16.89713 -16.57425 -16.26999 -15.89426 -15.49982 -15.10377 -14.84506 -14.30416 -13.98168 -13.73902 -13.40950 -13.21256 -13.02907 -12.78150 -12.49987 -11.90863 -11.87654 -11.61809 -11.43621 -11.19500 -11.05412 -10.95335 -10.82201 -10.50291 -10.29670 -10.16210 -10.03900 -9.89504 -9.42128 -9.21001 -8.93314 -8.48308 -8.23027 -7.38137 -5.93338 -3.87290 3.37725 3.47664 3.53428 3.55262 4.03599 4.38155 4.57476 4.74449 4.87448 5.05758 5.09165 5.15180 5.23824 5.30550 5.32793 5.44839 5.49332 5.59467 5.63967 5.64782 5.68973 5.89369 5.91456 5.96705 6.01915 6.13349 6.25663 6.30561 6.39542 6.49069 6.55980 6.57876 6.74892 6.83931 6.97015 7.19564 7.22269 7.29155 7.76757 7.85981 8.01582 8.69415 9.09701 9.73054 11.19694 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018514 B = 0.008098 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.043803 B = 3456.794216 C = 3972.607444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.022 3.978 4 H 0.072 0.928 5 C 0.045 3.955 6 O -0.381 6.381 7 C 0.058 3.942 8 C -0.143 4.143 9 C 0.085 3.915 10 H 0.084 0.916 11 N -0.496 5.496 12 C 0.028 3.972 13 C 0.100 3.900 14 C 0.012 3.988 15 C -0.454 4.454 16 H 0.072 0.928 17 C 0.083 3.917 18 N -0.902 5.902 19 Si 0.870 3.130 20 H -0.282 1.282 21 H -0.299 1.299 22 H -0.257 1.257 23 C -0.188 4.188 24 C -0.201 4.201 25 H 0.041 0.959 26 H 0.038 0.962 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.010 0.990 37 H 0.058 0.942 38 H 0.031 0.969 39 H 0.260 0.740 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.592 5.676 -9.988 15.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.288 6.288 3 C -0.038 4.038 4 H 0.090 0.910 5 C -0.033 4.033 6 O -0.300 6.300 7 C -0.019 4.019 8 C -0.181 4.181 9 C -0.025 4.025 10 H 0.103 0.897 11 N -0.216 5.216 12 C -0.120 4.120 13 C -0.027 4.027 14 C 0.010 3.990 15 C -0.492 4.492 16 H 0.090 0.910 17 C -0.118 4.118 18 N -0.540 5.540 19 Si 0.699 3.301 20 H -0.209 1.209 21 H -0.226 1.226 22 H -0.181 1.181 23 C -0.225 4.225 24 C -0.239 4.239 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.028 0.972 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.912 5.713 -9.814 15.073 hybrid contribution -0.925 -0.939 -1.096 1.714 sum -10.837 4.774 -10.910 16.102 Atomic orbital electron populations 1.22767 0.81688 1.02669 0.99651 1.88051 1.19256 1.26836 1.94706 1.23751 0.97986 0.85433 0.96647 0.90967 1.22997 0.98148 0.85666 0.96514 1.87898 1.32723 1.30039 1.79353 1.22706 0.84512 1.02263 0.92446 1.22274 1.03351 0.95876 0.96584 1.21976 0.93168 0.97559 0.89752 0.89744 1.61893 1.44225 1.04352 1.11154 1.22441 0.91588 0.96778 1.01183 1.21855 0.97273 0.86793 0.96823 1.19464 0.93162 0.95645 0.90699 1.20102 0.86594 1.30459 1.12017 0.91013 1.24771 0.94889 0.96064 0.96070 1.69915 0.97716 1.43315 1.43040 0.87031 0.78122 0.81983 0.82939 1.20930 1.22612 1.18071 1.22754 0.98608 1.01126 1.00003 1.23063 1.05407 0.91423 1.04033 0.94069 0.94368 0.89655 0.89409 0.92430 0.88442 0.92902 0.90779 0.88775 0.90445 0.92497 0.97191 0.92346 0.95108 0.93013 0.90096 0.91615 0.91762 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.67 101.05 1.08 1.42 16 2 O -0.37 -5.78 7.58 -35.23 -0.27 -6.04 16 3 C 0.02 0.32 1.68 -26.59 -0.04 0.28 16 4 H 0.07 1.04 6.03 -51.93 -0.31 0.73 16 5 C 0.04 0.59 6.47 37.21 0.24 0.83 16 6 O -0.38 -5.23 10.77 -35.23 -0.38 -5.61 16 7 C 0.06 0.73 6.84 37.20 0.25 0.98 16 8 C -0.14 -2.11 5.48 -26.59 -0.15 -2.25 16 9 C 0.09 1.47 2.12 -67.53 -0.14 1.33 16 10 H 0.08 1.63 7.79 -51.93 -0.40 1.23 16 11 N -0.50 -9.89 4.36 -234.68 -1.02 -10.91 16 12 C 0.03 0.49 8.04 60.07 0.48 0.97 16 13 C 0.10 2.16 3.40 -3.83 -0.01 2.14 16 14 C 0.01 0.27 0.67 -155.66 -0.10 0.17 16 15 C -0.45 -12.71 9.14 -34.44 -0.31 -13.02 16 16 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 17 C 0.08 2.40 5.45 -17.82 -0.10 2.31 16 18 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 19 Si 0.87 22.21 24.73 -169.99 -4.20 18.01 16 20 H -0.28 -7.12 6.97 56.52 0.39 -6.73 16 21 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 22 H -0.26 -6.28 6.10 56.52 0.34 -5.93 16 23 C -0.19 -3.86 8.54 -26.73 -0.23 -4.08 16 24 C -0.20 -4.36 8.67 -26.73 -0.23 -4.59 16 25 H 0.04 0.48 7.72 -51.93 -0.40 0.08 16 26 H 0.04 0.38 7.96 -51.93 -0.41 -0.04 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.09 1.00 7.96 -51.93 -0.41 0.59 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.05 6.35 -51.93 -0.33 0.72 16 33 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.08 1.43 6.74 -51.93 -0.35 1.08 16 35 H 0.06 0.87 6.16 -51.93 -0.32 0.55 16 36 H 0.01 0.16 6.29 -51.93 -0.33 -0.17 16 37 H 0.06 1.38 4.05 -51.93 -0.21 1.17 16 38 H 0.03 0.63 5.94 -51.93 -0.31 0.32 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 321.37 15.07 4.84 4.84 Total: -1.00 -30.99 321.37 -6.74 -37.73 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.22 Total: 2.41 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 0.74 Total: -13.52 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.25 Total: -37.81 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: -0.65 Total: -11.66 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.20 Total: 18.01 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.99 -6.74 -37.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880434627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.728 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds