Wall clock time and date at job start Mon Mar 30 2020 01:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00152 * 2 1 4 4 H 1.08996 * 109.57339 * 29.83510 * 3 2 1 5 5 C 1.53098 * 109.51867 * 269.68275 * 3 2 1 6 6 O 1.42902 * 109.41100 * 182.48307 * 5 3 2 7 7 C 1.42904 * 114.09564 * 61.16229 * 6 5 3 8 8 C 1.53090 * 109.41232 * 298.83440 * 7 6 5 9 9 C 1.53172 * 109.52190 * 149.99641 * 3 2 1 10 10 H 1.08995 * 109.61696 * 56.97835 * 9 3 2 11 11 N 1.46894 * 109.54500 * 296.75004 * 9 3 2 12 12 C 1.46903 * 111.00076 * 309.12560 * 11 9 3 13 13 C 1.46902 * 111.00042 * 73.08086 * 11 9 3 14 14 C 1.52994 * 109.47127 * 162.88990 * 13 11 9 15 15 C 1.50699 * 115.55224 * 304.05182 * 14 13 11 16 16 H 1.08002 * 119.99601 * 121.76569 * 15 14 13 17 17 C 1.37871 * 120.00249 * 301.48877 * 15 14 13 18 18 N 1.31511 * 120.00321 * 171.73914 * 17 15 14 19 19 Si 1.86806 * 119.99901 * 351.74067 * 17 15 14 20 20 H 1.48497 * 109.47233 * 93.54620 * 19 17 15 21 21 H 1.48494 * 109.47123 * 213.54938 * 19 17 15 22 22 H 1.48507 * 109.46908 * 333.54838 * 19 17 15 23 23 C 1.53008 * 117.51867 * 89.75792 * 14 13 11 24 24 C 1.53000 * 60.00117 * 107.48025 * 23 14 13 25 25 H 1.09001 * 109.47568 * 300.00506 * 1 2 3 26 26 H 1.08999 * 109.46962 * 60.00176 * 1 2 3 27 27 H 1.08993 * 109.47409 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.48115 * 62.50103 * 5 3 2 29 29 H 1.09001 * 109.48653 * 302.47454 * 5 3 2 30 30 H 1.09006 * 109.47832 * 178.85981 * 7 6 5 31 31 H 1.08993 * 109.48302 * 58.81969 * 7 6 5 32 32 H 1.08999 * 109.52812 * 297.70754 * 8 7 6 33 33 H 1.09005 * 109.52324 * 177.51933 * 8 7 6 34 34 H 1.08998 * 109.47051 * 190.68161 * 12 11 9 35 35 H 1.08998 * 109.46973 * 310.67750 * 12 11 9 36 36 H 1.08995 * 109.47191 * 70.67678 * 12 11 9 37 37 H 1.08998 * 109.47191 * 42.88409 * 13 11 9 38 38 H 1.09002 * 109.46851 * 282.88911 * 13 11 9 39 39 H 0.96997 * 120.00006 * 180.02562 * 18 17 15 40 40 H 1.08996 * 117.49517 * 214.97080 * 23 14 13 41 41 H 1.08997 * 117.49820 * 359.97438 * 23 14 13 42 42 H 1.09007 * 117.49572 * 252.51316 * 24 23 14 43 43 H 1.08998 * 117.50404 * 107.48957 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 2.0014 0.5109 5 6 2.2256 1.7695 -1.4430 6 8 2.8598 3.0501 -1.4404 7 6 4.1472 3.0624 -0.8204 8 6 4.0090 2.6503 0.6475 9 6 3.3606 1.2645 0.7219 10 1 4.0098 0.5320 0.2424 11 7 3.1550 0.8930 2.1281 12 6 2.1230 1.7340 2.7494 13 6 2.8184 -0.5315 2.2525 14 6 3.0284 -0.9807 3.6999 15 6 4.4059 -0.7403 4.2617 16 1 4.5297 -0.1348 5.1475 17 6 5.5075 -1.2981 3.6484 18 7 6.7178 -0.9601 4.0367 19 14 5.2812 -2.5338 2.2659 20 1 5.3154 -1.8275 0.9601 21 1 6.3748 -3.5371 2.3148 22 1 3.9732 -3.2191 2.4238 23 6 1.8425 -0.8542 4.6584 24 6 2.2842 -2.2338 4.1658 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.2630 1.8416 -1.9492 29 1 2.8581 1.0516 -1.9652 30 1 4.5689 4.0660 -0.8780 31 1 4.8049 2.3615 -1.3343 32 1 3.3841 3.3734 1.1717 33 1 4.9951 2.6164 1.1108 34 1 2.1223 1.5716 3.8272 35 1 2.3344 2.7826 2.5401 36 1 1.1467 1.4717 2.3418 37 1 3.4612 -1.1156 1.5939 38 1 1.7762 -0.6844 1.9722 39 1 7.4928 -1.3523 3.6049 40 1 2.0587 -0.5971 5.6953 41 1 0.9125 -0.4506 4.2580 42 1 1.6447 -2.7379 3.4411 43 1 2.7910 -2.8843 4.8785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880434627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:30 Heat of formation + Delta-G solvation = -68.856094 kcal Electronic energy + Delta-G solvation = -23009.185891 eV Core-core repulsion = 19862.184909 eV Total energy + Delta-G solvation = -3147.000983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.34128 -39.10631 -38.26900 -36.74860 -34.14456 -32.65596 -31.28608 -28.97498 -27.63120 -27.35201 -26.30339 -24.15484 -23.47963 -23.09206 -20.86128 -20.72890 -18.24688 -18.00370 -17.60750 -17.19738 -16.87366 -16.54902 -16.16290 -15.64187 -15.47864 -15.00744 -14.94452 -14.66983 -14.53033 -14.24202 -13.86501 -13.48526 -13.40650 -12.94812 -12.80715 -12.73485 -12.42026 -12.29116 -12.18141 -12.14252 -12.00952 -11.77241 -11.47110 -11.26756 -11.06180 -10.88525 -10.46583 -10.37963 -10.17520 -8.81602 -8.18017 -6.14117 1.33288 1.37948 1.50354 2.43097 2.50533 2.91260 3.01834 3.19061 3.51069 3.62225 3.80152 3.94731 4.02824 4.15167 4.23999 4.27117 4.37736 4.39941 4.44937 4.47832 4.51847 4.59539 4.59966 4.68203 4.75710 4.77198 4.86142 4.91310 4.91919 4.95763 5.09381 5.10449 5.12893 5.24888 5.43891 5.53363 5.82399 5.95105 6.25286 6.35195 6.38884 6.49448 6.86698 7.48973 8.98963 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018514 B = 0.008098 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.043803 B = 3456.794216 C = 3972.607444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.032 3.968 4 H 0.080 0.920 5 C 0.047 3.953 6 O -0.385 6.385 7 C 0.062 3.938 8 C -0.138 4.138 9 C 0.081 3.919 10 H 0.055 0.945 11 N -0.527 5.527 12 C 0.034 3.966 13 C 0.114 3.886 14 C -0.018 4.018 15 C -0.446 4.446 16 H 0.026 0.974 17 C 0.031 3.969 18 N -0.951 5.951 19 Si 0.928 3.072 20 H -0.282 1.282 21 H -0.304 1.304 22 H -0.236 1.236 23 C -0.164 4.164 24 C -0.195 4.195 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.053 0.947 30 H 0.123 0.877 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.028 0.972 37 H 0.035 0.965 38 H 0.049 0.951 39 H 0.259 0.741 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.337 5.926 -11.770 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C -0.028 4.028 4 H 0.098 0.902 5 C -0.030 4.030 6 O -0.304 6.304 7 C -0.015 4.015 8 C -0.176 4.176 9 C -0.028 4.028 10 H 0.073 0.927 11 N -0.248 5.248 12 C -0.114 4.114 13 C -0.013 4.013 14 C -0.019 4.019 15 C -0.484 4.484 16 H 0.044 0.956 17 C -0.165 4.165 18 N -0.592 5.592 19 Si 0.755 3.245 20 H -0.208 1.208 21 H -0.232 1.232 22 H -0.159 1.159 23 C -0.201 4.201 24 C -0.234 4.234 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.129 0.871 29 H 0.071 0.929 30 H 0.141 0.859 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.694 5.967 -11.598 18.201 hybrid contribution -0.097 -0.957 -0.450 1.062 sum -12.791 5.009 -12.047 18.271 Atomic orbital electron populations 1.22976 0.79712 1.03786 1.00858 1.88007 1.21430 1.27158 1.94891 1.23570 0.96335 0.85543 0.97342 0.90207 1.23031 0.99166 0.85337 0.95508 1.87902 1.32956 1.30300 1.79208 1.22756 0.84408 1.03684 0.90652 1.22231 1.02218 0.94836 0.98307 1.21982 0.94575 0.97787 0.88469 0.92691 1.61808 1.45773 1.03899 1.13319 1.22387 0.91829 0.97261 0.99898 1.21600 0.97595 0.87661 0.94471 1.19419 0.91685 0.98197 0.92595 1.20236 0.89327 1.28607 1.10240 0.95557 1.25454 0.94501 0.97952 0.98593 1.70055 0.98658 1.45367 1.45134 0.86100 0.78588 0.79694 0.80072 1.20833 1.23169 1.15930 1.22761 0.98324 0.99988 0.99030 1.23069 1.04907 0.91356 1.04039 0.93759 0.92233 0.88685 0.87073 0.92898 0.85941 0.92890 0.89970 0.90664 0.92211 0.90896 0.95345 0.94711 0.93297 0.93168 0.90832 0.88534 0.89295 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.67 113.37 1.21 1.66 16 2 O -0.40 -11.23 7.58 -148.98 -1.13 -12.36 16 3 C 0.03 0.87 1.68 30.68 0.05 0.92 16 4 H 0.08 2.03 6.03 -2.39 -0.01 2.01 16 5 C 0.05 1.11 6.47 72.01 0.47 1.58 16 6 O -0.38 -9.47 10.77 -148.98 -1.60 -11.08 16 7 C 0.06 1.44 6.84 72.01 0.49 1.93 16 8 C -0.14 -3.94 5.48 30.69 0.17 -3.77 16 9 C 0.08 2.74 2.12 45.03 0.10 2.83 16 10 H 0.05 2.15 7.79 -2.39 -0.02 2.13 16 11 N -0.53 -20.62 4.36 -896.38 -3.91 -24.52 16 12 C 0.03 1.10 8.04 127.69 1.03 2.13 16 13 C 0.11 4.78 3.40 86.30 0.29 5.08 16 14 C -0.02 -0.81 0.67 -52.93 -0.04 -0.85 16 15 C -0.45 -25.63 9.14 25.60 0.23 -25.39 16 16 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 17 C 0.03 1.86 5.45 84.65 0.46 2.32 16 18 N -0.95 -60.71 13.96 21.44 0.30 -60.42 16 19 Si 0.93 46.69 24.73 68.60 1.70 48.39 16 20 H -0.28 -14.00 6.97 99.48 0.69 -13.31 16 21 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 22 H -0.24 -10.95 6.10 99.48 0.61 -10.35 16 23 C -0.16 -6.39 8.54 30.60 0.26 -6.13 16 24 C -0.20 -8.03 8.67 30.60 0.27 -7.77 16 25 H 0.04 0.85 7.72 -2.39 -0.02 0.83 16 26 H 0.06 0.93 7.96 -2.39 -0.02 0.91 16 27 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.11 2.10 7.96 -2.39 -0.02 2.08 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.12 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 2.18 6.35 -2.39 -0.02 2.17 16 33 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 34 H 0.06 2.13 6.74 -2.39 -0.02 2.12 16 35 H 0.07 2.09 6.16 -2.39 -0.01 2.08 16 36 H 0.03 0.81 6.29 -2.39 -0.02 0.80 16 37 H 0.03 1.61 4.05 -2.39 -0.01 1.60 16 38 H 0.05 1.85 5.94 -2.39 -0.01 1.84 16 39 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 40 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 43 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -68.54 321.37 1.21 -67.33 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.86 Total: 18.13 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: 4.99 Total: -25.46 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -3.61 Total: -84.94 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -2.73 Total: -23.44 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.70 Total: 48.39 kcal Total: -68.54 1.21 -67.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880434627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.528 kcal (2) G-P(sol) polarization free energy of solvation -68.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds