Wall clock time and date at job start Mon Mar 30 2020 01:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46887 * 2 1 4 4 C 1.37095 * 120.00058 * 264.76689 * 3 2 1 5 5 H 1.07993 * 120.00003 * 138.85590 * 4 3 2 6 6 C 1.38949 * 119.99634 * 318.85302 * 4 3 2 7 7 N 1.31405 * 120.00295 * 341.82940 * 6 4 3 8 8 Si 1.86804 * 119.99860 * 161.83119 * 6 4 3 9 9 H 1.48500 * 109.47145 * 89.99713 * 8 6 4 10 10 H 1.48501 * 109.47113 * 210.00025 * 8 6 4 11 11 H 1.48509 * 109.46969 * 329.99686 * 8 6 4 12 12 C 1.34782 * 120.00071 * 84.76594 * 3 2 1 13 13 O 1.21290 * 120.00082 * 180.02562 * 12 3 2 14 14 C 1.50698 * 119.99747 * 0.02562 * 12 3 2 15 15 C 1.53000 * 109.46883 * 180.02562 * 14 12 3 16 16 C 1.53006 * 109.47297 * 180.02562 * 15 14 12 17 17 H 1.09006 * 110.26980 * 54.29532 * 16 15 14 18 18 C 1.54943 * 110.39556 * 176.44181 * 16 15 14 19 19 C 1.55304 * 100.94152 * 155.40135 * 18 16 15 20 20 C 1.53001 * 110.84992 * 207.68083 * 19 18 16 21 21 C 1.52998 * 110.84574 * 84.05841 * 19 18 16 22 22 C 1.54381 * 102.25300 * 325.87181 * 19 18 16 23 23 O 1.43236 * 107.59306 * 21.35162 * 22 19 18 24 24 H 1.08996 * 109.46940 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47614 * 300.00157 * 1 2 3 26 26 H 1.09010 * 109.46790 * 60.00429 * 1 2 3 27 27 H 1.08990 * 109.47182 * 239.99926 * 2 1 3 28 28 H 1.08997 * 109.46491 * 119.99451 * 2 1 3 29 29 H 0.97003 * 120.00594 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47563 * 59.99904 * 14 12 3 31 31 H 1.09000 * 109.47423 * 299.99953 * 14 12 3 32 32 H 1.08999 * 109.47668 * 60.00127 * 15 14 12 33 33 H 1.09007 * 109.47055 * 299.99502 * 15 14 12 34 34 H 1.08996 * 111.12646 * 273.32569 * 18 16 15 35 35 H 1.09002 * 111.12062 * 37.48448 * 18 16 15 36 36 H 1.09001 * 109.46934 * 174.28891 * 20 19 18 37 37 H 1.09004 * 109.46566 * 294.28616 * 20 19 18 38 38 H 1.08995 * 109.47135 * 54.28546 * 20 19 18 39 39 H 1.09000 * 109.47468 * 305.71776 * 21 19 18 40 40 H 1.09004 * 109.47271 * 65.71641 * 21 19 18 41 41 H 1.09006 * 109.47501 * 185.71339 * 21 19 18 42 42 H 1.09004 * 109.83278 * 261.83949 * 22 19 18 43 43 H 1.08999 * 109.83554 * 140.86867 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3489 1.9915 -1.1823 5 1 2.0743 3.0218 -1.3534 6 6 3.0372 1.2842 -2.1604 7 7 3.6792 0.1818 -1.8450 8 14 3.0501 1.9004 -3.9238 9 1 4.2057 2.8119 -4.1212 10 1 3.1661 0.7460 -4.8508 11 1 1.7885 2.6332 -4.2013 12 6 2.1425 2.0521 1.1624 13 8 2.5463 3.1958 1.1623 14 6 1.7797 1.3812 2.4620 15 6 2.0103 2.3542 3.6200 16 6 1.6426 1.6728 4.9397 17 1 2.1856 0.7334 5.0439 18 6 1.9524 2.6085 6.1352 19 6 0.9673 2.0589 7.2027 20 6 0.5695 3.1557 8.1926 21 6 1.5705 0.8572 7.9326 22 6 -0.2412 1.6298 6.3433 23 8 0.2265 1.4398 5.0028 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 4.1600 -0.3118 -2.5277 30 1 2.4018 0.4969 2.6006 31 1 0.7304 1.0871 2.4386 32 1 1.3879 3.2382 3.4814 33 1 3.0596 2.6486 3.6437 34 1 2.9865 2.4995 6.4617 35 1 1.7271 3.6465 5.8902 36 1 -0.1967 2.7751 8.8679 37 1 1.4435 3.4594 8.7688 38 1 0.1785 4.0139 7.6461 39 1 1.8797 0.1074 7.2044 40 1 2.4360 1.1803 8.5111 41 1 0.8256 0.4275 8.6025 42 1 -1.0035 2.4087 6.3620 43 1 -0.6548 0.6969 6.7262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888555694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:38 Heat of formation + Delta-G solvation = -101.315431 kcal Electronic energy + Delta-G solvation = -21402.440967 eV Core-core repulsion = 18254.032442 eV Total energy + Delta-G solvation = -3148.408525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.00437 -38.41710 -35.02729 -34.64879 -33.01339 -31.88550 -29.33283 -29.00792 -27.62004 -26.23378 -25.27705 -23.45915 -22.06334 -20.80495 -19.46051 -18.48426 -16.68301 -16.49982 -15.96427 -15.37802 -15.03735 -14.54595 -14.34004 -14.29090 -13.93224 -13.57648 -13.35621 -12.86157 -12.82415 -12.64243 -12.35489 -12.17762 -11.85560 -11.71402 -11.43519 -11.34147 -11.26158 -10.97842 -10.87720 -10.82463 -10.74630 -10.52911 -10.36134 -10.24390 -10.13220 -9.94737 -9.35997 -8.83548 -8.24665 -7.31189 -6.23713 -3.91432 3.22735 3.30169 3.35682 3.87420 4.06665 4.23096 4.25966 4.54980 4.69975 4.85955 5.08119 5.09039 5.13965 5.21882 5.36807 5.45243 5.45613 5.59463 5.62588 5.69079 5.71506 5.77057 5.84311 5.92623 5.94626 5.98694 6.03416 6.13695 6.18373 6.30292 6.32082 6.47206 6.62021 6.70766 6.76150 6.97668 7.17905 7.31746 7.66059 8.39997 8.63152 9.30425 9.51751 10.15359 10.81612 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039799 B = 0.003811 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.359684 B = 7345.304353 C = 7581.134587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.445 5.445 4 C -0.307 4.307 5 H 0.086 0.914 6 C 0.037 3.963 7 N -0.874 5.874 8 Si 0.916 3.084 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.463 3.537 13 O -0.585 6.585 14 C -0.132 4.132 15 C -0.096 4.096 16 C 0.082 3.918 17 H 0.069 0.931 18 C -0.143 4.143 19 C -0.104 4.104 20 C -0.135 4.135 21 C -0.138 4.138 22 C 0.060 3.940 23 O -0.375 6.375 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.048 0.952 29 H 0.266 0.734 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.744 -1.513 16.912 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.019 4.019 3 N -0.165 5.165 4 C -0.435 4.435 5 H 0.103 0.897 6 C -0.166 4.166 7 N -0.512 5.512 8 Si 0.743 3.257 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.251 3.749 13 O -0.469 6.469 14 C -0.172 4.172 15 C -0.134 4.134 16 C 0.025 3.975 17 H 0.086 0.914 18 C -0.180 4.180 19 C -0.104 4.104 20 C -0.192 4.192 21 C -0.195 4.195 22 C -0.017 4.017 23 O -0.295 6.295 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.119 0.881 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.557 -1.162 16.612 17.556 hybrid contribution 0.177 0.043 -0.682 0.706 sum -5.381 -1.119 15.930 16.852 Atomic orbital electron populations 1.22225 0.98300 1.00264 1.01578 1.21420 0.91575 0.85678 1.03260 1.43463 1.56324 1.11749 1.04924 1.19356 1.34565 0.98427 0.91182 0.89654 1.25403 0.94189 0.96588 1.00463 1.69929 1.29742 1.17664 1.33872 0.86110 0.78913 0.78281 0.82416 1.20351 1.20899 1.19454 1.20466 0.81506 0.87812 0.85089 1.90492 1.50384 1.18931 1.87097 1.21586 1.02709 0.99046 0.93845 1.21430 1.02375 0.98468 0.91154 1.23096 0.81789 0.97232 0.95407 0.91358 1.23414 0.99792 1.00451 0.94358 1.22133 0.95813 0.96433 0.96004 1.21743 1.01390 0.97593 0.98493 1.21819 1.00678 0.96922 1.00060 1.23205 0.95684 1.00260 0.82587 1.88455 1.22786 1.91242 1.26969 0.93229 0.93621 0.92584 0.88073 0.93397 0.92416 0.90592 0.89886 0.90903 0.90336 0.90002 0.90041 0.92462 0.92266 0.92194 0.92151 0.92289 0.92393 0.91589 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 10.15 37.16 0.38 -2.76 16 2 C 0.11 2.37 5.41 -4.04 -0.02 2.35 16 3 N -0.44 -11.71 2.50 -114.82 -0.29 -12.00 16 4 C -0.31 -8.81 8.84 -14.93 -0.13 -8.94 16 5 H 0.09 2.55 7.82 -52.49 -0.41 2.14 16 6 C 0.04 1.02 4.95 -17.47 -0.09 0.93 16 7 N -0.87 -24.25 11.61 55.50 0.64 -23.60 16 8 Si 0.92 21.15 29.59 -169.99 -5.03 16.12 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 C 0.46 11.79 7.59 -10.98 -0.08 11.71 16 13 O -0.59 -16.86 15.89 5.55 0.09 -16.77 16 14 C -0.13 -2.58 4.23 -27.88 -0.12 -2.70 16 15 C -0.10 -1.67 4.25 -26.73 -0.11 -1.78 16 16 C 0.08 1.14 3.11 -25.70 -0.08 1.06 16 17 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 18 C -0.14 -1.60 5.53 -24.48 -0.14 -1.74 16 19 C -0.10 -0.99 0.95 -152.56 -0.14 -1.14 16 20 C -0.13 -1.07 8.51 37.16 0.32 -0.75 16 21 C -0.14 -1.16 8.46 37.16 0.31 -0.84 16 22 C 0.06 0.67 6.99 37.88 0.26 0.93 16 23 O -0.37 -5.57 10.75 -35.23 -0.38 -5.95 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.83 6.60 -51.93 -0.34 0.49 16 26 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 27 H 0.10 2.50 5.76 -51.93 -0.30 2.20 16 28 H 0.05 0.99 6.66 -51.93 -0.35 0.65 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.08 1.40 7.41 -51.93 -0.38 1.02 16 31 H 0.08 1.57 6.34 -51.93 -0.33 1.24 16 32 H 0.07 1.36 8.10 -51.93 -0.42 0.93 16 33 H 0.08 1.39 8.10 -51.92 -0.42 0.97 16 34 H 0.08 0.82 8.03 -51.93 -0.42 0.41 16 35 H 0.08 0.94 7.94 -51.93 -0.41 0.53 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 39 H 0.06 0.55 7.50 -51.93 -0.39 0.16 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.70 7.81 -51.93 -0.41 0.30 16 43 H 0.06 0.65 7.84 -51.93 -0.41 0.24 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -32.02 339.58 -6.97 -38.99 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.48 Total: 1.77 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 0.36 Total: -3.67 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.36 Total: -35.60 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.29 Total: -22.72 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.02 -6.97 -38.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888555694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.323 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds