Wall clock time and date at job start Mon Mar 30 2020 01:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46887 * 2 1 4 4 C 1.37095 * 120.00058 * 264.76689 * 3 2 1 5 5 H 1.07993 * 120.00003 * 138.85590 * 4 3 2 6 6 C 1.38949 * 119.99634 * 318.85302 * 4 3 2 7 7 N 1.31405 * 120.00295 * 341.82940 * 6 4 3 8 8 Si 1.86804 * 119.99860 * 161.83119 * 6 4 3 9 9 H 1.48500 * 109.47145 * 89.99713 * 8 6 4 10 10 H 1.48501 * 109.47113 * 210.00025 * 8 6 4 11 11 H 1.48509 * 109.46969 * 329.99686 * 8 6 4 12 12 C 1.34782 * 120.00071 * 84.76594 * 3 2 1 13 13 O 1.21290 * 120.00082 * 180.02562 * 12 3 2 14 14 C 1.50698 * 119.99747 * 0.02562 * 12 3 2 15 15 C 1.53000 * 109.46883 * 180.02562 * 14 12 3 16 16 C 1.53006 * 109.47297 * 180.02562 * 15 14 12 17 17 H 1.09006 * 110.26980 * 54.29532 * 16 15 14 18 18 C 1.54943 * 110.39556 * 176.44181 * 16 15 14 19 19 C 1.55304 * 100.94152 * 155.40135 * 18 16 15 20 20 C 1.53001 * 110.84992 * 207.68083 * 19 18 16 21 21 C 1.52998 * 110.84574 * 84.05841 * 19 18 16 22 22 C 1.54381 * 102.25300 * 325.87181 * 19 18 16 23 23 O 1.43236 * 107.59306 * 21.35162 * 22 19 18 24 24 H 1.08996 * 109.46940 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47614 * 300.00157 * 1 2 3 26 26 H 1.09010 * 109.46790 * 60.00429 * 1 2 3 27 27 H 1.08990 * 109.47182 * 239.99926 * 2 1 3 28 28 H 1.08997 * 109.46491 * 119.99451 * 2 1 3 29 29 H 0.97003 * 120.00594 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47563 * 59.99904 * 14 12 3 31 31 H 1.09000 * 109.47423 * 299.99953 * 14 12 3 32 32 H 1.08999 * 109.47668 * 60.00127 * 15 14 12 33 33 H 1.09007 * 109.47055 * 299.99502 * 15 14 12 34 34 H 1.08996 * 111.12646 * 273.32569 * 18 16 15 35 35 H 1.09002 * 111.12062 * 37.48448 * 18 16 15 36 36 H 1.09001 * 109.46934 * 174.28891 * 20 19 18 37 37 H 1.09004 * 109.46566 * 294.28616 * 20 19 18 38 38 H 1.08995 * 109.47135 * 54.28546 * 20 19 18 39 39 H 1.09000 * 109.47468 * 305.71776 * 21 19 18 40 40 H 1.09004 * 109.47271 * 65.71641 * 21 19 18 41 41 H 1.09006 * 109.47501 * 185.71339 * 21 19 18 42 42 H 1.09004 * 109.83278 * 261.83949 * 22 19 18 43 43 H 1.08999 * 109.83554 * 140.86867 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3489 1.9915 -1.1823 5 1 2.0743 3.0218 -1.3534 6 6 3.0372 1.2842 -2.1604 7 7 3.6792 0.1818 -1.8450 8 14 3.0501 1.9004 -3.9238 9 1 4.2057 2.8119 -4.1212 10 1 3.1661 0.7460 -4.8508 11 1 1.7885 2.6332 -4.2013 12 6 2.1425 2.0521 1.1624 13 8 2.5463 3.1958 1.1623 14 6 1.7797 1.3812 2.4620 15 6 2.0103 2.3542 3.6200 16 6 1.6426 1.6728 4.9397 17 1 2.1856 0.7334 5.0439 18 6 1.9524 2.6085 6.1352 19 6 0.9673 2.0589 7.2027 20 6 0.5695 3.1557 8.1926 21 6 1.5705 0.8572 7.9326 22 6 -0.2412 1.6298 6.3433 23 8 0.2265 1.4398 5.0028 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 4.1600 -0.3118 -2.5277 30 1 2.4018 0.4969 2.6006 31 1 0.7304 1.0871 2.4386 32 1 1.3879 3.2382 3.4814 33 1 3.0596 2.6486 3.6437 34 1 2.9865 2.4995 6.4617 35 1 1.7271 3.6465 5.8902 36 1 -0.1967 2.7751 8.8679 37 1 1.4435 3.4594 8.7688 38 1 0.1785 4.0139 7.6461 39 1 1.8797 0.1074 7.2044 40 1 2.4360 1.1803 8.5111 41 1 0.8256 0.4275 8.6025 42 1 -1.0035 2.4087 6.3620 43 1 -0.6548 0.6969 6.7262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888555694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:38 Heat of formation + Delta-G solvation = -120.551187 kcal Electronic energy + Delta-G solvation = -21403.275092 eV Core-core repulsion = 18254.032442 eV Total energy + Delta-G solvation = -3149.242650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02973 -40.30514 -36.94650 -35.65218 -34.49432 -33.82607 -31.14572 -30.27119 -28.23877 -27.35905 -26.82945 -25.01115 -23.80019 -21.97851 -20.65724 -20.03138 -18.70970 -17.72435 -17.54907 -16.95506 -16.48631 -15.99735 -15.96762 -15.56864 -15.02130 -14.69518 -14.51760 -14.41509 -14.12014 -13.98928 -13.68145 -13.49873 -13.22785 -13.03802 -12.83862 -12.74213 -12.60602 -12.50483 -12.28199 -12.21429 -12.09139 -12.00678 -11.72121 -11.62186 -11.53604 -11.26077 -10.87904 -10.39373 -10.29455 -9.38054 -8.33049 -6.09708 1.37647 1.40138 1.53243 2.09125 2.30795 2.90147 3.02180 3.09024 3.43728 3.74085 3.88194 4.02732 4.07789 4.13793 4.31003 4.31708 4.35767 4.48921 4.60729 4.64277 4.73411 4.75504 4.78517 4.82914 4.85160 4.91194 5.00667 5.01660 5.06577 5.08682 5.18565 5.22435 5.28971 5.30565 5.34056 5.46075 5.47201 5.55371 6.16743 6.25053 6.57926 7.20452 7.49297 8.11155 8.70905 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039799 B = 0.003811 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.359684 B = 7345.304353 C = 7581.134587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.104 3.896 3 N -0.457 5.457 4 C -0.345 4.345 5 H 0.058 0.942 6 C 0.004 3.996 7 N -0.892 5.892 8 Si 0.982 3.018 9 H -0.278 1.278 10 H -0.266 1.266 11 H -0.267 1.267 12 C 0.445 3.555 13 O -0.631 6.631 14 C -0.116 4.116 15 C -0.090 4.090 16 C 0.087 3.913 17 H 0.079 0.921 18 C -0.142 4.142 19 C -0.096 4.096 20 C -0.133 4.133 21 C -0.136 4.136 22 C 0.051 3.949 23 O -0.401 6.401 24 H 0.085 0.915 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.273 0.727 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.262 -2.783 18.126 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.020 4.020 3 N -0.176 5.176 4 C -0.473 4.473 5 H 0.076 0.924 6 C -0.198 4.198 7 N -0.529 5.529 8 Si 0.805 3.195 9 H -0.204 1.204 10 H -0.190 1.190 11 H -0.192 1.192 12 C 0.235 3.765 13 O -0.519 6.519 14 C -0.156 4.156 15 C -0.128 4.128 16 C 0.030 3.970 17 H 0.097 0.903 18 C -0.179 4.179 19 C -0.096 4.096 20 C -0.190 4.190 21 C -0.193 4.193 22 C -0.025 4.025 23 O -0.321 6.321 24 H 0.104 0.896 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.092 -2.471 17.839 19.012 hybrid contribution 0.347 0.428 -1.061 1.196 sum -5.745 -2.042 16.778 17.852 Atomic orbital electron populations 1.22107 0.95454 1.02474 1.01148 1.21532 0.93876 0.83574 1.02971 1.43777 1.56193 1.13004 1.04644 1.19343 1.36667 0.98098 0.93238 0.92376 1.26159 0.93092 0.96596 1.03972 1.69988 1.29444 1.18199 1.35318 0.85140 0.78725 0.78210 0.77454 1.20421 1.18993 1.19180 1.21465 0.80718 0.87522 0.86749 1.90445 1.52407 1.21009 1.87997 1.21508 1.03373 0.99417 0.91266 1.21355 1.01503 0.97548 0.92440 1.22990 0.81935 0.97908 0.94179 0.90277 1.23415 1.01183 0.99455 0.93887 1.22121 0.94428 0.97371 0.95697 1.21735 1.02206 0.96804 0.98259 1.21823 1.01424 0.96082 1.00011 1.23437 0.96464 1.01183 0.81462 1.88410 1.23033 1.91365 1.29288 0.89616 0.92979 0.94059 0.90238 0.91645 0.91733 0.89030 0.88812 0.92958 0.91221 0.88615 0.90841 0.91094 0.91337 0.92790 0.92983 0.91227 0.91094 0.91323 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.64 10.15 71.98 0.73 -4.91 16 2 C 0.10 4.65 5.41 86.38 0.47 5.11 16 3 N -0.46 -24.60 2.50 -635.55 -1.59 -26.19 16 4 C -0.35 -20.43 8.84 84.04 0.74 -19.69 16 5 H 0.06 3.67 7.82 -2.91 -0.02 3.65 16 6 C 0.00 0.23 4.95 84.93 0.42 0.65 16 7 N -0.89 -49.52 11.61 21.66 0.25 -49.27 16 8 Si 0.98 43.58 29.59 68.60 2.03 45.61 16 9 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 10 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 12 C 0.45 23.32 7.59 87.66 0.67 23.99 16 13 O -0.63 -38.04 15.89 -3.06 -0.05 -38.09 16 14 C -0.12 -4.54 4.23 29.85 0.13 -4.41 16 15 C -0.09 -3.16 4.25 30.60 0.13 -3.03 16 16 C 0.09 2.33 3.11 31.26 0.10 2.42 16 17 H 0.08 1.96 7.75 -2.38 -0.02 1.94 16 18 C -0.14 -2.99 5.53 32.05 0.18 -2.81 16 19 C -0.10 -1.62 0.95 -50.92 -0.05 -1.67 16 20 C -0.13 -1.78 8.51 71.98 0.61 -1.16 16 21 C -0.14 -1.90 8.46 71.98 0.61 -1.29 16 22 C 0.05 1.05 6.99 72.45 0.51 1.56 16 23 O -0.40 -11.42 10.75 -148.98 -1.60 -13.02 16 24 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.05 1.83 6.60 -2.39 -0.02 1.81 16 26 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.08 3.92 5.76 -2.39 -0.01 3.91 16 28 H 0.07 2.64 6.66 -2.39 -0.02 2.63 16 29 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 30 H 0.09 3.29 7.41 -2.39 -0.02 3.27 16 31 H 0.09 3.47 6.34 -2.39 -0.02 3.46 16 32 H 0.05 2.01 8.10 -2.39 -0.02 1.99 16 33 H 0.07 2.52 8.10 -2.38 -0.02 2.50 16 34 H 0.10 1.74 8.03 -2.39 -0.02 1.72 16 35 H 0.07 1.66 7.94 -2.39 -0.02 1.64 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.05 0.79 8.12 -2.39 -0.02 0.77 16 39 H 0.05 0.82 7.50 -2.39 -0.02 0.80 16 40 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.07 1.36 7.81 -2.39 -0.02 1.34 16 43 H 0.08 1.38 7.84 -2.39 -0.02 1.36 16 Total: -1.00 -71.00 339.58 5.24 -65.76 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.96 Total: 20.46 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 5.24 Total: -5.24 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -1.34 Total: -75.46 kcal Atomic # 8 Polarization: -49.47 SS G_CDS: -1.65 Total: -51.12 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -71.00 5.24 -65.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888555694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.796 kcal (2) G-P(sol) polarization free energy of solvation -70.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds