Wall clock time and date at job start Mon Mar 30 2020 01:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46877 * 2 1 4 4 C 1.37104 * 119.99552 * 262.97576 * 3 2 1 5 5 H 1.07999 * 119.99919 * 142.20913 * 4 3 2 6 6 C 1.38950 * 119.99619 * 322.20718 * 4 3 2 7 7 N 1.31411 * 119.99507 * 157.13824 * 6 4 3 8 8 Si 1.86799 * 120.00524 * 337.14214 * 6 4 3 9 9 H 1.48499 * 109.47213 * 95.20387 * 8 6 4 10 10 H 1.48493 * 109.47057 * 215.20523 * 8 6 4 11 11 H 1.48498 * 109.46606 * 335.20447 * 8 6 4 12 12 C 1.34770 * 120.00582 * 82.96916 * 3 2 1 13 13 O 1.21293 * 120.00143 * 179.97438 * 12 3 2 14 14 C 1.50704 * 119.99945 * 0.02562 * 12 3 2 15 15 C 1.52993 * 109.47167 * 179.97438 * 14 12 3 16 16 H 1.08995 * 109.49268 * 55.02719 * 15 14 12 17 17 C 1.53108 * 109.48241 * 174.96606 * 15 14 12 18 18 C 1.53183 * 109.15869 * 177.50067 * 17 15 14 19 19 C 1.53180 * 109.10714 * 303.15180 * 18 17 15 20 20 C 1.53004 * 109.52137 * 176.83943 * 19 18 17 21 21 C 1.52997 * 109.52467 * 296.96577 * 19 18 17 22 22 C 1.53096 * 109.16259 * 56.93592 * 19 18 17 23 23 O 1.42902 * 109.48041 * 294.99573 * 15 14 12 24 24 H 1.09003 * 109.46730 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47476 * 300.00458 * 1 2 3 26 26 H 1.08998 * 109.47101 * 60.01134 * 1 2 3 27 27 H 1.08995 * 109.47476 * 239.99542 * 2 1 3 28 28 H 1.08998 * 109.47101 * 119.98865 * 2 1 3 29 29 H 0.96998 * 119.99910 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47328 * 59.99055 * 14 12 3 31 31 H 1.09003 * 109.46846 * 299.99509 * 14 12 3 32 32 H 1.09005 * 109.45234 * 57.64478 * 17 15 14 33 33 H 1.08992 * 109.59585 * 297.44824 * 17 15 14 34 34 H 1.09000 * 109.54222 * 183.24409 * 18 17 15 35 35 H 1.08996 * 109.54110 * 63.05832 * 18 17 15 36 36 H 1.08999 * 109.46562 * 60.00207 * 20 19 18 37 37 H 1.08995 * 109.47003 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47009 * 300.00092 * 20 19 18 39 39 H 1.09000 * 109.46834 * 60.00437 * 21 19 18 40 40 H 1.09000 * 109.47126 * 179.97438 * 21 19 18 41 41 H 1.08999 * 109.47321 * 300.00240 * 21 19 18 42 42 H 1.08996 * 109.47964 * 62.37508 * 22 19 18 43 43 H 1.08997 * 109.47978 * 182.39283 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3836 1.9791 -1.1785 5 1 2.1620 3.0228 -1.3460 6 6 3.0391 1.2422 -2.1573 7 7 2.9966 1.6317 -3.4116 8 14 3.9807 -0.3020 -1.6902 9 1 3.1113 -1.4900 -1.8856 10 1 5.1867 -0.4248 -2.5478 11 1 4.3925 -0.2188 -0.2659 12 6 2.1082 2.0643 1.1583 13 8 2.5129 3.2078 1.1583 14 6 1.7070 1.4071 2.4538 15 6 1.9047 2.3918 3.6079 16 1 1.3570 3.3108 3.3996 17 6 1.3805 1.7700 4.9051 18 6 1.6386 2.7359 6.0657 19 6 3.1364 3.0498 6.1331 20 6 3.3946 4.0749 7.2393 21 6 3.9147 1.7671 6.4329 22 6 3.5908 3.6230 4.7882 23 8 3.2957 2.6875 3.7491 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5136 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5136 0.8901 29 1 3.4538 1.1171 -4.0950 30 1 2.3245 0.5244 2.6198 31 1 0.6588 1.1127 2.4024 32 1 1.8986 0.8293 5.0920 33 1 0.3100 1.5859 4.8157 34 1 1.3201 2.2754 7.0009 35 1 1.0799 3.6576 5.9040 36 1 3.0657 3.6681 8.1955 37 1 4.4605 4.2979 7.2862 38 1 2.8416 4.9891 7.0237 39 1 3.7319 1.0383 5.6433 40 1 4.9803 1.9914 6.4803 41 1 3.5863 1.3577 7.3883 42 1 3.0652 4.5582 4.5955 43 1 4.6645 3.8086 4.8163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888555858.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:48 Heat of formation + Delta-G solvation = -89.817672 kcal Electronic energy + Delta-G solvation = -22115.632482 eV Core-core repulsion = 18967.722537 eV Total energy + Delta-G solvation = -3147.909945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.93414 -38.52730 -35.42270 -34.80181 -32.94613 -32.14058 -29.70632 -29.37591 -27.36331 -26.06273 -25.04585 -23.52729 -22.80715 -21.40154 -18.79994 -18.65032 -16.81387 -16.19477 -16.03123 -15.52266 -15.41136 -14.95620 -14.38520 -14.21649 -13.97823 -13.44727 -13.20153 -13.05396 -12.56863 -12.49020 -12.32727 -12.24956 -12.17594 -11.96725 -11.86420 -11.45813 -11.36170 -11.16650 -11.04291 -10.81612 -10.78804 -10.59634 -10.40031 -10.09440 -9.94655 -9.78131 -9.03160 -8.97607 -8.33501 -7.63302 -6.31168 -3.85990 3.09194 3.28283 3.35596 3.86106 4.13013 4.23213 4.44849 4.62504 4.71614 4.78826 4.95879 5.12376 5.22685 5.28939 5.45669 5.49589 5.53364 5.55860 5.61915 5.67763 5.75747 5.78046 5.84780 5.85750 5.88525 5.91389 5.96888 6.00534 6.06830 6.11245 6.13728 6.28856 6.31017 6.33120 6.47377 6.47666 6.78458 7.62923 7.67582 8.39296 8.63788 9.09381 9.43487 9.92398 10.81516 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029354 B = 0.005054 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.644028 B = 5539.105092 C = 5742.236551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.087 3.913 3 N -0.473 5.473 4 C -0.310 4.310 5 H 0.103 0.897 6 C 0.059 3.941 7 N -0.868 5.868 8 Si 0.872 3.128 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.263 1.263 12 C 0.471 3.529 13 O -0.553 6.553 14 C -0.134 4.134 15 C 0.111 3.889 16 H 0.062 0.938 17 C -0.153 4.153 18 C -0.109 4.109 19 C -0.104 4.104 20 C -0.139 4.139 21 C -0.136 4.136 22 C 0.074 3.926 23 O -0.356 6.356 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.272 0.728 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.289 -3.122 18.844 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.037 4.037 3 N -0.196 5.196 4 C -0.438 4.438 5 H 0.120 0.880 6 C -0.145 4.145 7 N -0.505 5.505 8 Si 0.699 3.301 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.187 1.187 12 C 0.259 3.741 13 O -0.433 6.433 14 C -0.174 4.174 15 C 0.052 3.948 16 H 0.080 0.920 17 C -0.191 4.191 18 C -0.146 4.146 19 C -0.104 4.104 20 C -0.196 4.196 21 C -0.193 4.193 22 C -0.003 4.003 23 O -0.274 6.274 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.877 -2.638 18.502 18.910 hybrid contribution 0.332 -0.884 0.225 0.971 sum -2.545 -3.522 18.727 19.225 Atomic orbital electron populations 1.22150 0.96524 1.00876 1.02533 1.21759 0.94461 0.86017 1.01423 1.43784 1.57951 1.11416 1.06427 1.19003 1.36624 0.98426 0.89713 0.87992 1.25341 0.96359 0.98093 0.94754 1.69775 1.40609 1.40361 0.99716 0.87030 0.80359 0.82893 0.79795 1.20359 1.21465 1.18738 1.20109 0.81911 0.87867 0.84186 1.90560 1.48337 1.18259 1.86187 1.21787 1.02532 0.99334 0.93772 1.21729 0.83395 0.97312 0.92323 0.92004 1.22312 1.01453 0.99758 0.95558 1.21630 0.95095 0.99515 0.98364 1.21246 0.95966 0.96661 0.96524 1.21786 1.01640 0.98422 0.97760 1.21803 0.99443 0.96950 1.01128 1.22528 1.00679 0.91666 0.85460 1.88046 1.23558 1.62659 1.53170 0.92769 0.93067 0.91517 0.90787 0.92394 0.91791 0.89562 0.88885 0.90930 0.91068 0.91830 0.91908 0.92625 0.92521 0.92637 0.91670 0.92854 0.93206 0.93429 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 10.11 37.16 0.38 -2.34 16 2 C 0.09 1.77 4.46 -4.04 -0.02 1.75 16 3 N -0.47 -11.71 2.18 -114.81 -0.25 -11.96 16 4 C -0.31 -9.02 9.35 -14.93 -0.14 -9.16 16 5 H 0.10 3.33 7.92 -52.49 -0.42 2.92 16 6 C 0.06 1.69 5.24 -17.47 -0.09 1.60 16 7 N -0.87 -25.67 13.96 55.50 0.77 -24.89 16 8 Si 0.87 21.17 25.12 -169.99 -4.27 16.90 16 9 H -0.28 -6.20 6.67 56.52 0.38 -5.82 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.26 -6.44 7.11 56.52 0.40 -6.03 16 12 C 0.47 11.26 7.45 -10.99 -0.08 11.18 16 13 O -0.55 -15.42 15.29 -8.87 -0.14 -15.56 16 14 C -0.13 -2.35 4.02 -27.88 -0.11 -2.46 16 15 C 0.11 1.81 2.19 -26.68 -0.06 1.75 16 16 H 0.06 1.09 7.96 -51.93 -0.41 0.68 16 17 C -0.15 -1.84 5.06 -26.58 -0.13 -1.97 16 18 C -0.11 -1.17 4.81 -26.54 -0.13 -1.29 16 19 C -0.10 -1.16 0.77 -154.36 -0.12 -1.27 16 20 C -0.14 -1.26 8.49 37.16 0.32 -0.95 16 21 C -0.14 -1.48 8.08 37.16 0.30 -1.18 16 22 C 0.07 1.06 5.54 37.21 0.21 1.26 16 23 O -0.36 -6.50 9.06 -49.65 -0.45 -6.95 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.77 6.38 -51.93 -0.33 0.44 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.07 1.61 3.72 -51.93 -0.19 1.42 16 28 H 0.06 1.01 6.74 -51.93 -0.35 0.66 16 29 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.09 1.43 7.42 -51.93 -0.39 1.04 16 31 H 0.09 1.37 6.35 -51.93 -0.33 1.04 16 32 H 0.07 0.85 6.64 -51.93 -0.34 0.51 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.80 6.15 -51.93 -0.32 0.48 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 327.35 15.07 4.93 4.93 Total: -1.00 -33.19 327.35 -6.40 -39.59 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.32 Total: 1.04 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 0.31 Total: -3.10 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.52 Total: -36.86 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.59 Total: -22.51 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.27 Total: 16.90 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.19 -6.40 -39.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888555858.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.229 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds