Wall clock time and date at job start Mon Mar 30 2020 01:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46877 * 2 1 4 4 C 1.37104 * 119.99552 * 262.97576 * 3 2 1 5 5 H 1.07999 * 119.99919 * 142.20913 * 4 3 2 6 6 C 1.38950 * 119.99619 * 322.20718 * 4 3 2 7 7 N 1.31411 * 119.99507 * 157.13824 * 6 4 3 8 8 Si 1.86799 * 120.00524 * 337.14214 * 6 4 3 9 9 H 1.48499 * 109.47213 * 95.20387 * 8 6 4 10 10 H 1.48493 * 109.47057 * 215.20523 * 8 6 4 11 11 H 1.48498 * 109.46606 * 335.20447 * 8 6 4 12 12 C 1.34770 * 120.00582 * 82.96916 * 3 2 1 13 13 O 1.21293 * 120.00143 * 179.97438 * 12 3 2 14 14 C 1.50704 * 119.99945 * 0.02562 * 12 3 2 15 15 C 1.52993 * 109.47167 * 179.97438 * 14 12 3 16 16 H 1.08995 * 109.49268 * 55.02719 * 15 14 12 17 17 C 1.53108 * 109.48241 * 174.96606 * 15 14 12 18 18 C 1.53183 * 109.15869 * 177.50067 * 17 15 14 19 19 C 1.53180 * 109.10714 * 303.15180 * 18 17 15 20 20 C 1.53004 * 109.52137 * 176.83943 * 19 18 17 21 21 C 1.52997 * 109.52467 * 296.96577 * 19 18 17 22 22 C 1.53096 * 109.16259 * 56.93592 * 19 18 17 23 23 O 1.42902 * 109.48041 * 294.99573 * 15 14 12 24 24 H 1.09003 * 109.46730 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47476 * 300.00458 * 1 2 3 26 26 H 1.08998 * 109.47101 * 60.01134 * 1 2 3 27 27 H 1.08995 * 109.47476 * 239.99542 * 2 1 3 28 28 H 1.08998 * 109.47101 * 119.98865 * 2 1 3 29 29 H 0.96998 * 119.99910 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47328 * 59.99055 * 14 12 3 31 31 H 1.09003 * 109.46846 * 299.99509 * 14 12 3 32 32 H 1.09005 * 109.45234 * 57.64478 * 17 15 14 33 33 H 1.08992 * 109.59585 * 297.44824 * 17 15 14 34 34 H 1.09000 * 109.54222 * 183.24409 * 18 17 15 35 35 H 1.08996 * 109.54110 * 63.05832 * 18 17 15 36 36 H 1.08999 * 109.46562 * 60.00207 * 20 19 18 37 37 H 1.08995 * 109.47003 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47009 * 300.00092 * 20 19 18 39 39 H 1.09000 * 109.46834 * 60.00437 * 21 19 18 40 40 H 1.09000 * 109.47126 * 179.97438 * 21 19 18 41 41 H 1.08999 * 109.47321 * 300.00240 * 21 19 18 42 42 H 1.08996 * 109.47964 * 62.37508 * 22 19 18 43 43 H 1.08997 * 109.47978 * 182.39283 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3836 1.9791 -1.1785 5 1 2.1620 3.0228 -1.3460 6 6 3.0391 1.2422 -2.1573 7 7 2.9966 1.6317 -3.4116 8 14 3.9807 -0.3020 -1.6902 9 1 3.1113 -1.4900 -1.8856 10 1 5.1867 -0.4248 -2.5478 11 1 4.3925 -0.2188 -0.2659 12 6 2.1082 2.0643 1.1583 13 8 2.5129 3.2078 1.1583 14 6 1.7070 1.4071 2.4538 15 6 1.9047 2.3918 3.6079 16 1 1.3570 3.3108 3.3996 17 6 1.3805 1.7700 4.9051 18 6 1.6386 2.7359 6.0657 19 6 3.1364 3.0498 6.1331 20 6 3.3946 4.0749 7.2393 21 6 3.9147 1.7671 6.4329 22 6 3.5908 3.6230 4.7882 23 8 3.2957 2.6875 3.7491 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5136 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5136 0.8901 29 1 3.4538 1.1171 -4.0950 30 1 2.3245 0.5244 2.6198 31 1 0.6588 1.1127 2.4024 32 1 1.8986 0.8293 5.0920 33 1 0.3100 1.5859 4.8157 34 1 1.3201 2.2754 7.0009 35 1 1.0799 3.6576 5.9040 36 1 3.0657 3.6681 8.1955 37 1 4.4605 4.2979 7.2862 38 1 2.8416 4.9891 7.0237 39 1 3.7319 1.0383 5.6433 40 1 4.9803 1.9914 6.4803 41 1 3.5863 1.3577 7.3883 42 1 3.0652 4.5582 4.5955 43 1 4.6645 3.8086 4.8163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888555858.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:48 Heat of formation + Delta-G solvation = -111.566745 kcal Electronic energy + Delta-G solvation = -22116.575593 eV Core-core repulsion = 18967.722537 eV Total energy + Delta-G solvation = -3148.853055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.17839 -40.19274 -37.06184 -36.14621 -34.47284 -33.91316 -31.33730 -30.63136 -28.14809 -27.43237 -26.55634 -24.88889 -24.32270 -22.57076 -20.50150 -19.77706 -18.80988 -17.80203 -17.44107 -17.30598 -16.56511 -15.95011 -15.82023 -15.81012 -15.11174 -14.91313 -14.73701 -14.48520 -14.28256 -13.88584 -13.78471 -13.48385 -13.07482 -12.97947 -12.85542 -12.76721 -12.73991 -12.64533 -12.46298 -12.36745 -11.94427 -11.88537 -11.74730 -11.55505 -11.30107 -11.06316 -11.03173 -10.32181 -10.12282 -9.66149 -8.50537 -6.10223 1.17632 1.31566 1.44153 2.03712 2.18468 2.73823 2.92610 2.99744 3.70942 3.80661 3.83350 3.87952 4.07261 4.12678 4.18812 4.34579 4.40001 4.45575 4.52262 4.59329 4.67062 4.72298 4.74293 4.83547 4.84515 4.92808 4.96915 5.01021 5.04048 5.06651 5.08096 5.16960 5.27483 5.32787 5.41165 5.44085 5.57706 5.58436 6.05627 6.45835 6.62867 7.00111 7.36724 7.96778 8.67596 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029354 B = 0.005054 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.644028 B = 5539.105092 C = 5742.236551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.077 3.923 3 N -0.484 5.484 4 C -0.330 4.330 5 H 0.038 0.962 6 C 0.012 3.988 7 N -0.914 5.914 8 Si 0.946 3.054 9 H -0.235 1.235 10 H -0.289 1.289 11 H -0.263 1.263 12 C 0.459 3.541 13 O -0.609 6.609 14 C -0.122 4.122 15 C 0.107 3.893 16 H 0.035 0.965 17 C -0.142 4.142 18 C -0.108 4.108 19 C -0.098 4.098 20 C -0.135 4.135 21 C -0.133 4.133 22 C 0.067 3.933 23 O -0.393 6.393 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.035 0.965 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.279 0.721 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.034 0.966 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.044 -6.574 22.047 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.045 4.045 3 N -0.207 5.207 4 C -0.458 4.458 5 H 0.056 0.944 6 C -0.190 4.190 7 N -0.552 5.552 8 Si 0.769 3.231 9 H -0.160 1.160 10 H -0.216 1.216 11 H -0.188 1.188 12 C 0.250 3.750 13 O -0.493 6.493 14 C -0.161 4.161 15 C 0.049 3.951 16 H 0.053 0.947 17 C -0.180 4.180 18 C -0.146 4.146 19 C -0.098 4.098 20 C -0.193 4.193 21 C -0.190 4.190 22 C -0.010 4.010 23 O -0.312 6.312 24 H 0.115 0.885 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.088 0.912 30 H 0.125 0.875 31 H 0.147 0.853 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.668 -6.119 21.713 22.855 hybrid contribution 0.559 0.338 -0.826 1.053 sum -3.109 -5.781 20.887 21.895 Atomic orbital electron populations 1.22099 0.93836 1.03440 1.01982 1.22067 0.96815 0.83103 1.02521 1.43972 1.58233 1.13283 1.05227 1.18603 1.38439 0.96457 0.92301 0.94391 1.26121 0.96461 1.02295 0.94085 1.69888 1.41572 1.42699 1.01008 0.85874 0.78740 0.79500 0.78990 1.15996 1.21636 1.18752 1.21310 0.80426 0.87289 0.85992 1.90525 1.50509 1.20962 1.87300 1.21831 1.04837 0.99511 0.89930 1.21817 0.82654 0.96365 0.94304 0.94676 1.22238 1.02655 0.99921 0.93159 1.21668 0.94485 0.99391 0.99032 1.21195 0.96523 0.97284 0.94846 1.21764 1.01915 0.97873 0.97721 1.21779 0.99356 0.96242 1.01655 1.22697 1.00588 0.90927 0.86813 1.87975 1.24764 1.63478 1.54975 0.88524 0.91263 0.94536 0.92197 0.88484 0.91182 0.87528 0.85250 0.89855 0.88780 0.89140 0.92245 0.90757 0.92335 0.92756 0.93099 0.93089 0.91020 0.94770 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.72 10.11 71.98 0.73 -3.99 16 2 C 0.08 2.91 4.46 86.38 0.39 3.30 16 3 N -0.48 -24.22 2.18 -635.53 -1.39 -25.61 16 4 C -0.33 -20.22 9.35 84.04 0.79 -19.43 16 5 H 0.04 2.74 7.92 -2.91 -0.02 2.71 16 6 C 0.01 0.70 5.24 84.93 0.45 1.14 16 7 N -0.91 -56.16 13.96 21.66 0.30 -55.86 16 8 Si 0.95 43.53 25.12 68.60 1.72 45.25 16 9 H -0.24 -9.29 6.67 99.48 0.66 -8.63 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 12 C 0.46 22.29 7.45 87.66 0.65 22.95 16 13 O -0.61 -35.96 15.29 10.71 0.16 -35.80 16 14 C -0.12 -4.00 4.02 29.85 0.12 -3.88 16 15 C 0.11 3.37 2.19 30.63 0.07 3.44 16 16 H 0.04 1.27 7.96 -2.39 -0.02 1.25 16 17 C -0.14 -2.93 5.06 30.69 0.16 -2.78 16 18 C -0.11 -1.99 4.81 30.72 0.15 -1.84 16 19 C -0.10 -1.99 0.77 -52.09 -0.04 -2.03 16 20 C -0.14 -2.15 8.49 71.98 0.61 -1.54 16 21 C -0.13 -2.53 8.08 71.98 0.58 -1.95 16 22 C 0.07 1.92 5.54 72.01 0.40 2.32 16 23 O -0.39 -14.43 9.06 -135.20 -1.23 -15.65 16 24 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.07 1.83 6.38 -2.39 -0.02 1.81 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 2.42 3.72 -2.39 -0.01 2.41 16 28 H 0.10 2.90 6.74 -2.39 -0.02 2.89 16 29 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 30 H 0.11 3.12 7.42 -2.39 -0.02 3.10 16 31 H 0.13 3.27 6.35 -2.39 -0.02 3.26 16 32 H 0.08 1.59 6.64 -2.38 -0.02 1.57 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 1.12 6.15 -2.39 -0.01 1.10 16 40 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -79.79 327.35 5.54 -74.25 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.93 Total: 17.72 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 5.04 Total: -4.29 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -1.09 Total: -81.47 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: -1.06 Total: -51.45 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.72 Total: 45.25 kcal Total: -79.79 5.54 -74.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888555858.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.320 kcal (2) G-P(sol) polarization free energy of solvation -79.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds