Wall clock time and date at job start Mon Mar 30 2020 00:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50703 * 109.47087 * 119.99328 * 2 1 3 5 5 H 1.08001 * 120.00037 * 119.99654 * 4 2 1 6 6 C 1.37875 * 120.00214 * 300.00299 * 4 2 1 7 7 N 1.31520 * 119.99609 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47001 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47188 * 120.00103 * 8 6 4 11 11 H 1.48497 * 109.47104 * 240.00206 * 8 6 4 12 12 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 13 13 O 1.21283 * 119.99803 * 239.99993 * 12 2 1 14 14 N 1.34777 * 119.99675 * 60.27868 * 12 2 1 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 2 16 16 H 1.09007 * 109.47747 * 35.00142 * 15 14 12 17 17 C 1.53001 * 109.47313 * 274.99614 * 15 14 12 18 18 C 1.52997 * 109.46769 * 65.00173 * 17 15 14 19 19 O 1.42905 * 109.46882 * 180.02562 * 18 17 15 20 20 C 1.53006 * 109.47036 * 154.99621 * 15 14 12 21 21 C 1.54266 * 110.03105 * 57.16542 * 20 15 14 22 22 C 1.54880 * 104.19691 * 217.10477 * 21 20 15 23 23 C 1.54895 * 102.74900 * 37.94491 * 22 21 20 24 24 C 1.53873 * 110.03043 * 299.99968 * 20 15 14 25 25 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 26 26 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 27 27 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99301 * 180.02562 * 7 6 4 29 29 H 0.97000 * 119.99894 * 359.71837 * 14 12 2 30 30 H 1.09005 * 109.46962 * 185.00214 * 17 15 14 31 31 H 1.09001 * 109.46558 * 304.99971 * 17 15 14 32 32 H 1.08997 * 109.47199 * 299.99670 * 18 17 15 33 33 H 1.08992 * 109.47177 * 60.00686 * 18 17 15 34 34 H 0.96694 * 114.00037 * 180.02562 * 19 18 17 35 35 H 1.08998 * 110.01717 * 178.60508 * 20 15 14 36 36 H 1.08999 * 110.48631 * 335.78593 * 21 20 15 37 37 H 1.08999 * 110.48396 * 98.42383 * 21 20 15 38 38 H 1.09003 * 110.76106 * 279.63078 * 22 21 20 39 39 H 1.09000 * 110.91468 * 156.33097 * 22 21 20 40 40 H 1.09005 * 110.48488 * 203.38292 * 23 22 21 41 41 H 1.08996 * 110.59908 * 80.78755 * 23 22 21 42 42 H 1.08998 * 110.03177 * 238.56485 * 24 20 15 43 43 H 1.08996 * 110.03796 * 0.02562 * 24 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9426 0.8299 2.6033 8 14 2.3213 -1.1200 4.0081 9 1 3.1464 -2.2866 3.6041 10 1 3.1464 -0.1869 4.8166 11 1 1.1660 -1.5863 4.8162 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6966 -1.1189 14 7 1.7114 -0.2468 -2.4545 15 6 2.2048 -0.9340 -3.6505 16 1 2.2412 -2.0074 -3.4640 17 6 3.6085 -0.4271 -3.9875 18 6 4.5747 -0.8192 -2.8679 19 8 5.8857 -0.3452 -3.1823 20 6 1.2652 -0.6521 -4.8248 21 6 1.1487 0.8688 -5.0549 22 6 -0.3327 1.0801 -5.4544 23 6 -1.0793 0.0743 -4.5431 24 6 -0.1513 -1.1573 -4.4993 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7086 1.1615 3.4843 29 1 1.1537 0.5418 -2.5435 30 1 3.9399 -0.8719 -4.9259 31 1 3.5886 0.6582 -4.0869 32 1 4.2433 -0.3744 -1.9296 33 1 4.5945 -1.9044 -2.7686 34 1 6.5517 -0.5588 -2.5147 35 1 1.6376 -1.1394 -5.7259 36 1 1.3779 1.4120 -4.1382 37 1 1.8101 1.1842 -5.8618 38 1 -0.4878 0.8376 -6.5057 39 1 -0.6505 2.1013 -5.2441 40 1 -2.0438 -0.1900 -4.9766 41 1 -1.2117 0.4879 -3.5434 42 1 -0.4668 -1.8891 -5.2430 43 1 -0.1696 -1.6028 -3.5047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889119365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:40 Heat of formation + Delta-G solvation = -117.266543 kcal Electronic energy + Delta-G solvation = -22136.814266 eV Core-core repulsion = 18987.714049 eV Total energy + Delta-G solvation = -3149.100217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.90367 -37.85600 -36.51604 -34.27004 -33.69771 -31.45666 -29.86694 -28.92044 -28.55031 -25.13630 -24.35114 -22.59610 -21.43416 -20.40980 -19.50872 -19.11247 -17.09553 -16.42758 -16.13694 -15.83140 -15.45087 -14.91899 -14.53054 -13.98167 -13.80761 -13.66920 -13.31979 -12.98098 -12.91107 -12.65062 -12.26275 -11.61147 -11.50851 -11.13185 -11.08647 -11.03902 -11.02139 -10.79971 -10.74318 -10.62643 -10.60891 -10.48105 -10.29664 -10.21888 -9.93995 -9.52030 -8.96033 -8.59876 -8.39560 -8.30982 -6.03359 -4.06330 3.31433 3.39201 3.46863 3.73168 3.93719 4.32791 4.47216 4.58774 4.65248 4.81008 5.25390 5.29856 5.31916 5.40470 5.45072 5.51167 5.55461 5.65693 5.75462 5.80838 5.84063 5.92126 6.00759 6.04975 6.10859 6.20114 6.23105 6.33405 6.38359 6.41636 6.50627 6.63238 6.83575 6.93900 7.16863 7.48432 7.76242 7.91169 7.99732 8.16746 8.47226 9.03035 9.26037 9.59467 11.04259 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017933 B = 0.006078 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.979325 B = 4605.705664 C = 5713.147459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.050 0.950 4 C -0.498 4.498 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.520 3.480 13 O -0.546 6.546 14 N -0.738 5.738 15 C 0.152 3.848 16 H 0.084 0.916 17 C -0.125 4.125 18 C 0.077 3.923 19 O -0.587 6.587 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.121 4.121 25 H 0.092 0.908 26 H 0.011 0.989 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.395 0.605 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.377 0.623 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 0.458 -15.231 15.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.068 0.932 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.310 3.690 13 O -0.422 6.422 14 N -0.393 5.393 15 C 0.046 3.954 16 H 0.102 0.898 17 C -0.164 4.164 18 C 0.000 4.000 19 O -0.393 6.393 20 C -0.115 4.115 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.163 4.163 24 C -0.159 4.159 25 H 0.111 0.889 26 H 0.030 0.970 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.231 0.769 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.223 0.777 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.302 0.048 -15.524 15.579 hybrid contribution 0.262 -0.245 1.297 1.346 sum -1.040 -0.197 -14.227 14.267 Atomic orbital electron populations 1.21726 0.96615 0.99722 1.00837 1.18873 0.94136 0.96760 0.89556 0.93229 1.21177 1.30804 1.12699 0.88985 0.90763 1.24955 0.95165 0.95076 0.99117 1.69888 1.37190 1.23159 1.23378 0.86424 0.78613 0.79769 0.82599 1.19614 1.21095 1.21081 1.21904 0.78330 0.84219 0.84573 1.90521 1.37942 1.26948 1.86818 1.46447 1.55022 1.32535 1.05303 1.20784 0.91272 0.98064 0.85244 0.89768 1.21947 0.94160 1.01962 0.98335 1.22389 0.81521 0.98124 0.97993 1.86342 1.19877 1.82225 1.50858 1.22037 0.95436 0.96482 0.97529 1.22471 0.96556 0.95500 1.01543 1.22497 0.95203 0.99212 0.99319 1.22374 0.98064 0.95714 1.00136 1.22192 0.93701 0.97735 1.02276 0.88939 0.97009 0.95065 0.93062 0.76939 0.91399 0.91315 0.92230 0.93352 0.77700 0.90141 0.91080 0.91585 0.91813 0.91655 0.92014 0.91255 0.92131 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.87 37.16 0.33 -2.63 16 2 C 0.03 0.68 2.64 -92.92 -0.25 0.43 16 3 H 0.05 1.27 8.14 -51.92 -0.42 0.84 16 4 C -0.50 -13.88 8.37 -34.44 -0.29 -14.17 16 5 H 0.07 2.18 6.75 -52.49 -0.35 1.83 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.03 11.32 55.43 0.63 -24.40 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.52 11.22 5.71 -10.98 -0.06 11.16 16 13 O -0.55 -13.20 12.60 5.55 0.07 -13.13 16 14 N -0.74 -12.22 4.09 -53.80 -0.22 -12.44 16 15 C 0.15 2.18 1.80 -67.93 -0.12 2.06 16 16 H 0.08 1.37 7.58 -51.93 -0.39 0.97 16 17 C -0.13 -1.82 4.97 -26.73 -0.13 -1.95 16 18 C 0.08 1.32 5.65 37.16 0.21 1.53 16 19 O -0.59 -9.38 13.66 -35.23 -0.48 -9.86 16 20 C -0.10 -1.07 2.80 -89.50 -0.25 -1.32 16 21 C -0.12 -1.27 5.14 -25.08 -0.13 -1.40 16 22 C -0.12 -1.17 6.91 -24.74 -0.17 -1.34 16 23 C -0.13 -1.30 6.83 -25.07 -0.17 -1.47 16 24 C -0.12 -1.37 6.19 -25.61 -0.16 -1.53 16 25 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 26 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.40 5.97 6.26 -40.82 -0.26 5.72 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.99 7.44 -51.93 -0.39 0.60 16 32 H 0.06 1.19 5.65 -51.93 -0.29 0.90 16 33 H 0.05 0.86 7.85 -51.93 -0.41 0.45 16 34 H 0.38 4.59 9.12 45.56 0.42 5.00 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.80 6.10 -51.93 -0.32 0.49 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.99 7.37 -51.93 -0.38 0.61 16 LS Contribution 331.21 15.07 4.99 4.99 Total: -1.00 -30.41 331.21 -7.77 -38.18 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.45 Total: 9.18 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.29 Total: -9.16 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.41 Total: -36.84 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.41 Total: -23.00 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.41 -7.77 -38.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889119365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.085 kcal (2) G-P(sol) polarization free energy of solvation -30.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds