Wall clock time and date at job start Mon Mar 30 2020 00:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50703 * 109.47087 * 119.99328 * 2 1 3 5 5 H 1.08001 * 120.00037 * 119.99654 * 4 2 1 6 6 C 1.37875 * 120.00214 * 300.00299 * 4 2 1 7 7 N 1.31520 * 119.99609 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47001 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47188 * 120.00103 * 8 6 4 11 11 H 1.48497 * 109.47104 * 240.00206 * 8 6 4 12 12 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 13 13 O 1.21283 * 119.99803 * 239.99993 * 12 2 1 14 14 N 1.34777 * 119.99675 * 60.27868 * 12 2 1 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 2 16 16 H 1.09007 * 109.47747 * 35.00142 * 15 14 12 17 17 C 1.53001 * 109.47313 * 274.99614 * 15 14 12 18 18 C 1.52997 * 109.46769 * 65.00173 * 17 15 14 19 19 O 1.42905 * 109.46882 * 180.02562 * 18 17 15 20 20 C 1.53006 * 109.47036 * 154.99621 * 15 14 12 21 21 C 1.54266 * 110.03105 * 57.16542 * 20 15 14 22 22 C 1.54880 * 104.19691 * 217.10477 * 21 20 15 23 23 C 1.54895 * 102.74900 * 37.94491 * 22 21 20 24 24 C 1.53873 * 110.03043 * 299.99968 * 20 15 14 25 25 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 26 26 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 27 27 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99301 * 180.02562 * 7 6 4 29 29 H 0.97000 * 119.99894 * 359.71837 * 14 12 2 30 30 H 1.09005 * 109.46962 * 185.00214 * 17 15 14 31 31 H 1.09001 * 109.46558 * 304.99971 * 17 15 14 32 32 H 1.08997 * 109.47199 * 299.99670 * 18 17 15 33 33 H 1.08992 * 109.47177 * 60.00686 * 18 17 15 34 34 H 0.96694 * 114.00037 * 180.02562 * 19 18 17 35 35 H 1.08998 * 110.01717 * 178.60508 * 20 15 14 36 36 H 1.08999 * 110.48631 * 335.78593 * 21 20 15 37 37 H 1.08999 * 110.48396 * 98.42383 * 21 20 15 38 38 H 1.09003 * 110.76106 * 279.63078 * 22 21 20 39 39 H 1.09000 * 110.91468 * 156.33097 * 22 21 20 40 40 H 1.09005 * 110.48488 * 203.38292 * 23 22 21 41 41 H 1.08996 * 110.59908 * 80.78755 * 23 22 21 42 42 H 1.08998 * 110.03177 * 238.56485 * 24 20 15 43 43 H 1.08996 * 110.03796 * 0.02562 * 24 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9426 0.8299 2.6033 8 14 2.3213 -1.1200 4.0081 9 1 3.1464 -2.2866 3.6041 10 1 3.1464 -0.1869 4.8166 11 1 1.1660 -1.5863 4.8162 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6966 -1.1189 14 7 1.7114 -0.2468 -2.4545 15 6 2.2048 -0.9340 -3.6505 16 1 2.2412 -2.0074 -3.4640 17 6 3.6085 -0.4271 -3.9875 18 6 4.5747 -0.8192 -2.8679 19 8 5.8857 -0.3452 -3.1823 20 6 1.2652 -0.6521 -4.8248 21 6 1.1487 0.8688 -5.0549 22 6 -0.3327 1.0801 -5.4544 23 6 -1.0793 0.0743 -4.5431 24 6 -0.1513 -1.1573 -4.4993 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7086 1.1615 3.4843 29 1 1.1537 0.5418 -2.5435 30 1 3.9399 -0.8719 -4.9259 31 1 3.5886 0.6582 -4.0869 32 1 4.2433 -0.3744 -1.9296 33 1 4.5945 -1.9044 -2.7686 34 1 6.5517 -0.5588 -2.5147 35 1 1.6376 -1.1394 -5.7259 36 1 1.3779 1.4120 -4.1382 37 1 1.8101 1.1842 -5.8618 38 1 -0.4878 0.8376 -6.5057 39 1 -0.6505 2.1013 -5.2441 40 1 -2.0438 -0.1900 -4.9766 41 1 -1.2117 0.4879 -3.5434 42 1 -0.4668 -1.8891 -5.2430 43 1 -0.1696 -1.6028 -3.5047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889119365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:40 Heat of formation + Delta-G solvation = -137.887158 kcal Electronic energy + Delta-G solvation = -22137.708443 eV Core-core repulsion = 18987.714049 eV Total energy + Delta-G solvation = -3149.994394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.27040 -39.16067 -37.80919 -35.82246 -35.43836 -33.14708 -31.58671 -29.88463 -29.44840 -27.19843 -25.63544 -24.30269 -22.52717 -21.61096 -20.81641 -20.27714 -18.50333 -18.22067 -17.79119 -17.27318 -16.55369 -16.31425 -16.12159 -15.49029 -15.36554 -14.90209 -14.54744 -14.38921 -14.19790 -13.97412 -13.70383 -13.42402 -12.97885 -12.70646 -12.65022 -12.60042 -12.28814 -12.16674 -12.02469 -11.91128 -11.83311 -11.71321 -11.46715 -11.41699 -11.29008 -11.01871 -10.89436 -10.58003 -10.22272 -9.87416 -8.14900 -6.24788 1.38242 1.40554 1.53449 2.00088 2.36880 2.57057 3.14824 3.18489 3.70732 3.75525 3.89483 4.09101 4.16569 4.33719 4.42603 4.51141 4.58358 4.64237 4.70678 4.73784 4.76132 4.83586 4.89383 4.94858 4.95531 5.03037 5.05287 5.09149 5.15708 5.21202 5.33270 5.39319 5.49770 5.51078 5.56368 5.71496 5.79472 5.95852 6.22798 6.75566 6.77247 6.89788 7.41491 7.61289 8.91139 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017933 B = 0.006078 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.979325 B = 4605.705664 C = 5713.147459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.023 3.977 3 H 0.034 0.966 4 C -0.523 4.523 5 H 0.050 0.950 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.279 1.279 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.524 3.476 13 O -0.577 6.577 14 N -0.717 5.717 15 C 0.153 3.847 16 H 0.065 0.935 17 C -0.119 4.119 18 C 0.082 3.918 19 O -0.591 6.591 20 C -0.088 4.088 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.127 4.127 24 C -0.122 4.122 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.022 0.978 28 H 0.264 0.736 29 H 0.405 0.595 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.035 0.965 34 H 0.391 0.609 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 0.936 -17.138 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.002 3.998 3 H 0.052 0.948 4 C -0.561 4.561 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.204 1.204 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.313 3.687 13 O -0.457 6.457 14 N -0.371 5.371 15 C 0.049 3.951 16 H 0.083 0.917 17 C -0.157 4.157 18 C 0.005 3.995 19 O -0.398 6.398 20 C -0.107 4.107 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.164 4.164 24 C -0.160 4.160 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.242 0.758 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.240 0.760 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.751 0.555 -17.457 17.554 hybrid contribution 0.432 -0.385 1.867 1.955 sum -1.319 0.170 -15.590 15.647 Atomic orbital electron populations 1.21523 0.95287 0.99261 1.01422 1.18795 0.95197 0.95703 0.90154 0.94786 1.21311 1.31247 1.12535 0.91018 0.93200 1.25600 0.95293 0.95763 1.01450 1.69969 1.37397 1.23710 1.24133 0.85564 0.78307 0.78588 0.79549 1.20383 1.20124 1.20061 1.21335 0.78209 0.83738 0.85454 1.90503 1.39423 1.28331 1.87417 1.46172 1.53960 1.32332 1.04648 1.20941 0.92336 0.96638 0.85231 0.91694 1.21921 0.93181 1.02416 0.98187 1.22239 0.82631 0.97019 0.97635 1.86311 1.19751 1.82172 1.51606 1.22036 0.94442 0.97658 0.96513 1.22482 0.97759 0.94268 1.01558 1.22475 0.93996 0.99194 0.99856 1.22382 0.98643 0.95518 0.99870 1.22188 0.94150 0.98479 1.01144 0.91288 0.93357 0.95896 0.92714 0.75830 0.89116 0.90712 0.95662 0.94671 0.76005 0.87883 0.92344 0.90036 0.90254 0.91044 0.90868 0.92648 0.90606 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.87 71.98 0.64 -4.69 16 2 C 0.02 1.13 2.64 -12.29 -0.03 1.10 16 3 H 0.03 1.80 8.14 -2.38 -0.02 1.78 16 4 C -0.52 -30.08 8.37 25.60 0.21 -29.86 16 5 H 0.05 3.06 6.75 -2.91 -0.02 3.04 16 6 C 0.02 1.00 5.30 84.65 0.45 1.44 16 7 N -0.91 -51.42 11.32 21.45 0.24 -51.18 16 8 Si 0.95 45.01 29.54 68.60 2.03 47.03 16 9 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.52 23.20 5.71 87.66 0.50 23.70 16 13 O -0.58 -29.04 12.60 -3.04 -0.04 -29.07 16 14 N -0.72 -23.64 4.09 -442.52 -1.81 -25.45 16 15 C 0.15 4.24 1.80 44.99 0.08 4.32 16 16 H 0.06 2.10 7.58 -2.38 -0.02 2.08 16 17 C -0.12 -3.26 4.97 30.59 0.15 -3.11 16 18 C 0.08 2.83 5.65 71.98 0.41 3.23 16 19 O -0.59 -18.40 13.66 -148.98 -2.04 -20.44 16 20 C -0.09 -1.73 2.80 -10.07 -0.03 -1.76 16 21 C -0.12 -2.15 5.14 31.67 0.16 -1.99 16 22 C -0.12 -1.81 6.91 31.88 0.22 -1.59 16 23 C -0.13 -2.32 6.83 31.67 0.22 -2.11 16 24 C -0.12 -2.51 6.19 31.32 0.19 -2.32 16 25 H 0.07 3.49 6.07 -2.39 -0.01 3.48 16 26 H 0.05 1.78 7.57 -2.38 -0.02 1.77 16 27 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.26 14.05 8.31 -92.70 -0.77 13.28 16 29 H 0.40 11.89 6.26 -92.71 -0.58 11.31 16 30 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.07 1.99 7.44 -2.39 -0.02 1.98 16 32 H 0.03 1.04 5.65 -2.39 -0.01 1.03 16 33 H 0.03 1.28 7.85 -2.39 -0.02 1.26 16 34 H 0.39 9.36 9.12 -74.06 -0.68 8.68 16 35 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.18 6.10 -2.39 -0.01 1.16 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.04 1.18 7.37 -2.39 -0.02 1.16 16 Total: -1.00 -66.71 331.21 1.31 -65.40 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: -0.25 Total: 27.32 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 3.18 Total: -13.61 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -1.57 Total: -76.62 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -2.07 Total: -49.51 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -66.71 1.31 -65.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889119365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.491 kcal (2) G-P(sol) polarization free energy of solvation -66.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds