Wall clock time and date at job start Mon Mar 30 2020 00:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.21277 * 120.00304 * 240.00314 * 12 2 1 14 14 N 1.34778 * 119.99637 * 59.99942 * 12 2 1 15 15 C 1.46505 * 119.99943 * 180.02562 * 14 12 2 16 16 H 1.09007 * 109.46886 * 325.00252 * 15 14 12 17 17 C 1.52996 * 109.47004 * 84.99728 * 15 14 12 18 18 C 1.52995 * 109.47540 * 295.00330 * 17 15 14 19 19 O 1.42896 * 109.47463 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47336 * 205.00146 * 15 14 12 21 21 C 1.54266 * 110.03162 * 177.16569 * 20 15 14 22 22 C 1.54894 * 104.19321 * 217.10456 * 21 20 15 23 23 C 1.54882 * 102.74742 * 37.94266 * 22 21 20 24 24 C 1.53879 * 110.03167 * 59.99673 * 20 15 14 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00446 * 0.02562 * 14 12 2 30 30 H 1.09003 * 109.47283 * 55.00325 * 17 15 14 31 31 H 1.09008 * 109.47101 * 174.99904 * 17 15 14 32 32 H 1.09004 * 109.47182 * 299.99860 * 18 17 15 33 33 H 1.08995 * 109.47021 * 59.99658 * 18 17 15 34 34 H 0.96698 * 114.00336 * 179.97438 * 19 18 17 35 35 H 1.09005 * 110.01322 * 298.60779 * 20 15 14 36 36 H 1.08995 * 110.48826 * 335.78066 * 21 20 15 37 37 H 1.08999 * 110.48557 * 98.43057 * 21 20 15 38 38 H 1.09001 * 110.75519 * 279.62797 * 22 21 20 39 39 H 1.09000 * 110.75262 * 156.26385 * 22 21 20 40 40 H 1.09002 * 110.48480 * 203.37495 * 23 22 21 41 41 H 1.09003 * 110.59918 * 80.79329 * 23 22 21 42 42 H 1.08993 * 110.03108 * 238.57221 * 24 20 15 43 43 H 1.09001 * 110.03081 * 359.95597 * 24 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1947 -0.9409 -3.6507 16 1 3.1939 -1.3335 -3.4614 17 6 1.2502 -2.0945 -3.9942 18 6 1.2937 -3.1392 -2.8773 19 8 0.4111 -4.2163 -3.1979 20 6 2.2464 0.0420 -4.8220 21 6 2.8257 -0.6541 -6.0709 22 6 3.6820 0.4413 -6.7535 23 6 4.3152 1.1803 -5.5486 24 6 3.1935 1.2085 -4.4899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.9026 -0.5283 4.4376 29 1 1.1494 0.5389 -2.5436 30 1 0.2339 -1.7139 -4.0963 31 1 1.5626 -2.5527 -4.9327 32 1 2.3100 -3.5198 -2.7752 33 1 0.9814 -2.6810 -1.9389 34 1 0.3880 -4.9173 -2.5322 35 1 1.2470 0.4216 -5.0350 36 1 3.4488 -1.5003 -5.7814 37 1 2.0232 -0.9789 -6.7332 38 1 3.0538 1.1167 -7.3342 39 1 4.4529 -0.0062 -7.3808 40 1 4.5999 2.1942 -5.8298 41 1 5.1798 0.6324 -5.1739 42 1 2.6540 2.1540 -4.5425 43 1 3.6157 1.0746 -3.4939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889119366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:42 Heat of formation + Delta-G solvation = -110.591003 kcal Electronic energy + Delta-G solvation = -21926.587023 eV Core-core repulsion = 18777.776279 eV Total energy + Delta-G solvation = -3148.810744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.87636 -38.08316 -36.54280 -34.51721 -33.82777 -31.69816 -30.58356 -28.92570 -28.58447 -25.14395 -24.50883 -22.80460 -21.12704 -20.62458 -19.86981 -19.15922 -17.14569 -16.84157 -16.37187 -15.87130 -15.52509 -14.99699 -14.80294 -14.27311 -14.01719 -13.58951 -13.43602 -13.18914 -13.08096 -12.60955 -12.30610 -12.20347 -11.61435 -11.49716 -11.38924 -11.19204 -11.08713 -11.03315 -11.00201 -10.74087 -10.69346 -10.54602 -10.29679 -10.28113 -9.64556 -9.55672 -9.10732 -8.69467 -8.58030 -8.53030 -6.06180 -4.06294 3.22495 3.29938 3.35613 3.55718 3.74145 4.27293 4.36964 4.49243 4.59732 4.72665 5.13395 5.22866 5.27167 5.33099 5.35562 5.46209 5.51161 5.54823 5.60206 5.68497 5.77691 5.80528 5.84545 5.95016 5.98683 6.06605 6.11031 6.15054 6.22173 6.26719 6.30214 6.35299 6.40607 6.47974 6.72421 7.01209 7.15241 7.54380 7.88819 8.13398 8.54526 9.07794 9.14469 9.53249 11.06777 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019636 B = 0.005608 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.624622 B = 4991.337543 C = 5823.238610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.006 4.006 3 H 0.051 0.949 4 C -0.504 4.504 5 H 0.093 0.907 6 C 0.070 3.930 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.279 1.279 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.529 3.471 13 O -0.530 6.530 14 N -0.742 5.742 15 C 0.154 3.846 16 H 0.087 0.913 17 C -0.127 4.127 18 C 0.076 3.924 19 O -0.587 6.587 20 C -0.096 4.096 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.123 4.123 25 H 0.056 0.944 26 H 0.033 0.967 27 H 0.048 0.952 28 H 0.264 0.736 29 H 0.394 0.606 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.378 0.622 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.190 3.578 -19.039 19.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 H 0.069 0.931 4 C -0.542 4.542 5 H 0.111 0.889 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.714 3.286 9 H -0.206 1.206 10 H -0.224 1.224 11 H -0.193 1.193 12 C 0.318 3.682 13 O -0.405 6.405 14 N -0.396 5.396 15 C 0.049 3.951 16 H 0.105 0.895 17 C -0.165 4.165 18 C -0.001 4.001 19 O -0.393 6.393 20 C -0.115 4.115 21 C -0.155 4.155 22 C -0.162 4.162 23 C -0.163 4.163 24 C -0.160 4.160 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.228 0.772 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.224 0.776 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.756 3.214 -19.252 19.533 hybrid contribution -0.865 0.911 0.779 1.478 sum -1.621 4.125 -18.473 18.997 Atomic orbital electron populations 1.22112 0.97410 1.01418 0.99216 1.19317 0.93117 0.97577 0.92762 0.93140 1.20931 1.32020 1.14067 0.87213 0.88886 1.24980 0.95828 0.96534 0.95805 1.69882 1.45508 1.40188 0.97865 0.86921 0.80721 0.83876 0.77043 1.20569 1.22353 1.19298 1.21207 0.78785 0.84248 0.84001 1.90573 1.37226 1.26165 1.86509 1.46349 1.55263 1.32453 1.05496 1.20912 0.98316 0.91330 0.84582 0.89523 1.21965 1.00470 0.95462 0.98645 1.22383 0.92747 0.87124 0.97833 1.86332 1.67535 1.34550 1.50872 1.22014 0.99790 0.95407 0.94310 1.22406 0.99198 0.98099 0.95767 1.22492 0.98854 0.97539 0.97309 1.22359 0.98201 1.00206 0.95487 1.22216 0.96337 0.97648 0.99824 0.92489 0.94845 0.93348 0.92589 0.77208 0.91545 0.91002 0.93271 0.92280 0.77572 0.90637 0.91129 0.91507 0.91670 0.91731 0.91946 0.91618 0.91862 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.57 37.16 0.32 -2.60 16 2 C -0.01 -0.14 2.23 -92.92 -0.21 -0.35 16 3 H 0.05 1.13 7.20 -51.93 -0.37 0.75 16 4 C -0.50 -14.31 8.96 -34.44 -0.31 -14.61 16 5 H 0.09 3.00 7.00 -52.49 -0.37 2.64 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 7 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 8 Si 0.88 21.23 24.37 -169.99 -4.14 17.09 16 9 H -0.28 -6.50 6.87 56.52 0.39 -6.12 16 10 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.27 -5.98 6.53 56.52 0.37 -5.61 16 12 C 0.53 10.92 5.72 -10.99 -0.06 10.86 16 13 O -0.53 -12.68 12.60 5.56 0.07 -12.61 16 14 N -0.74 -11.46 4.28 -53.80 -0.23 -11.69 16 15 C 0.15 2.09 1.50 -67.93 -0.10 1.98 16 16 H 0.09 1.36 7.55 -51.93 -0.39 0.97 16 17 C -0.13 -1.76 5.14 -26.74 -0.14 -1.90 16 18 C 0.08 1.28 5.65 37.15 0.21 1.49 16 19 O -0.59 -9.22 13.66 -35.23 -0.48 -9.70 16 20 C -0.10 -1.00 2.56 -89.50 -0.23 -1.23 16 21 C -0.12 -1.08 5.23 -25.07 -0.13 -1.21 16 22 C -0.12 -1.04 6.91 -24.74 -0.17 -1.21 16 23 C -0.12 -1.17 6.83 -25.08 -0.17 -1.34 16 24 C -0.12 -1.29 6.19 -25.61 -0.16 -1.44 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.03 0.54 7.56 -51.93 -0.39 0.14 16 27 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.39 5.19 8.02 -40.82 -0.33 4.87 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.91 7.13 -51.92 -0.37 0.54 16 32 H 0.05 0.87 7.85 -51.93 -0.41 0.46 16 33 H 0.06 1.15 5.64 -51.93 -0.29 0.86 16 34 H 0.38 4.57 9.12 45.56 0.42 4.99 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.69 7.77 -51.93 -0.40 0.29 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.92 7.37 -51.93 -0.38 0.54 16 LS Contribution 327.37 15.07 4.93 4.93 Total: -1.00 -32.63 327.37 -6.78 -39.41 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.45 Total: 8.98 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.25 Total: -9.66 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.54 Total: -38.44 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.41 Total: -22.32 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.14 Total: 17.09 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.63 -6.78 -39.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889119366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.182 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds