Wall clock time and date at job start Mon Mar 30 2020 00:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.21277 * 120.00304 * 240.00314 * 12 2 1 14 14 N 1.34778 * 119.99637 * 59.99942 * 12 2 1 15 15 C 1.46505 * 119.99943 * 180.02562 * 14 12 2 16 16 H 1.09007 * 109.46886 * 325.00252 * 15 14 12 17 17 C 1.52996 * 109.47004 * 84.99728 * 15 14 12 18 18 C 1.52995 * 109.47540 * 295.00330 * 17 15 14 19 19 O 1.42896 * 109.47463 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47336 * 205.00146 * 15 14 12 21 21 C 1.54266 * 110.03162 * 177.16569 * 20 15 14 22 22 C 1.54894 * 104.19321 * 217.10456 * 21 20 15 23 23 C 1.54882 * 102.74742 * 37.94266 * 22 21 20 24 24 C 1.53879 * 110.03167 * 59.99673 * 20 15 14 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00446 * 0.02562 * 14 12 2 30 30 H 1.09003 * 109.47283 * 55.00325 * 17 15 14 31 31 H 1.09008 * 109.47101 * 174.99904 * 17 15 14 32 32 H 1.09004 * 109.47182 * 299.99860 * 18 17 15 33 33 H 1.08995 * 109.47021 * 59.99658 * 18 17 15 34 34 H 0.96698 * 114.00336 * 179.97438 * 19 18 17 35 35 H 1.09005 * 110.01322 * 298.60779 * 20 15 14 36 36 H 1.08995 * 110.48826 * 335.78066 * 21 20 15 37 37 H 1.08999 * 110.48557 * 98.43057 * 21 20 15 38 38 H 1.09001 * 110.75519 * 279.62797 * 22 21 20 39 39 H 1.09000 * 110.75262 * 156.26385 * 22 21 20 40 40 H 1.09002 * 110.48480 * 203.37495 * 23 22 21 41 41 H 1.09003 * 110.59918 * 80.79329 * 23 22 21 42 42 H 1.08993 * 110.03108 * 238.57221 * 24 20 15 43 43 H 1.09001 * 110.03081 * 359.95597 * 24 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1947 -0.9409 -3.6507 16 1 3.1939 -1.3335 -3.4614 17 6 1.2502 -2.0945 -3.9942 18 6 1.2937 -3.1392 -2.8773 19 8 0.4111 -4.2163 -3.1979 20 6 2.2464 0.0420 -4.8220 21 6 2.8257 -0.6541 -6.0709 22 6 3.6820 0.4413 -6.7535 23 6 4.3152 1.1803 -5.5486 24 6 3.1935 1.2085 -4.4899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.9026 -0.5283 4.4376 29 1 1.1494 0.5389 -2.5436 30 1 0.2339 -1.7139 -4.0963 31 1 1.5626 -2.5527 -4.9327 32 1 2.3100 -3.5198 -2.7752 33 1 0.9814 -2.6810 -1.9389 34 1 0.3880 -4.9173 -2.5322 35 1 1.2470 0.4216 -5.0350 36 1 3.4488 -1.5003 -5.7814 37 1 2.0232 -0.9789 -6.7332 38 1 3.0538 1.1167 -7.3342 39 1 4.4529 -0.0062 -7.3808 40 1 4.5999 2.1942 -5.8298 41 1 5.1798 0.6324 -5.1739 42 1 2.6540 2.1540 -4.5425 43 1 3.6157 1.0746 -3.4939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889119366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:41 Heat of formation + Delta-G solvation = -135.885988 kcal Electronic energy + Delta-G solvation = -21927.683896 eV Core-core repulsion = 18777.776279 eV Total energy + Delta-G solvation = -3149.907617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.22608 -39.23773 -37.80603 -35.87517 -35.66282 -33.55239 -32.07635 -29.85906 -29.39523 -27.11171 -25.78193 -24.40668 -22.31160 -21.56854 -20.97673 -20.43709 -18.82388 -18.41785 -17.77663 -17.40226 -16.63571 -16.41806 -15.92318 -15.87439 -15.40297 -14.95036 -14.76479 -14.62527 -14.18426 -14.15374 -13.88803 -13.40165 -13.27742 -12.88132 -12.59398 -12.48114 -12.40439 -12.10987 -11.95776 -11.89446 -11.83044 -11.62464 -11.48182 -11.42805 -11.25089 -11.20028 -10.91219 -10.76571 -10.35439 -9.93695 -8.26644 -6.33698 1.32863 1.38956 1.50066 1.91938 2.33918 2.39411 3.07415 3.16543 3.68947 3.79384 3.84551 4.07536 4.10875 4.24171 4.34665 4.43151 4.50694 4.52340 4.60990 4.62379 4.69266 4.74278 4.76735 4.82978 4.88552 4.92802 5.00880 5.05257 5.08644 5.13098 5.20032 5.30553 5.35908 5.44961 5.51311 5.54182 5.55224 5.70272 6.27854 6.71519 6.72882 6.89263 7.28080 7.56497 8.90979 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019636 B = 0.005608 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.624622 B = 4991.337543 C = 5823.238610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.010 4.010 3 H 0.066 0.934 4 C -0.516 4.516 5 H 0.031 0.969 6 C 0.006 3.994 7 N -0.954 5.954 8 Si 0.958 3.042 9 H -0.263 1.263 10 H -0.301 1.301 11 H -0.231 1.231 12 C 0.529 3.471 13 O -0.575 6.575 14 N -0.718 5.718 15 C 0.157 3.843 16 H 0.059 0.941 17 C -0.119 4.119 18 C 0.081 3.919 19 O -0.590 6.590 20 C -0.087 4.087 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.127 4.127 24 C -0.124 4.124 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.043 0.957 28 H 0.266 0.734 29 H 0.411 0.589 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.391 0.609 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 6.295 -22.091 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 H 0.084 0.916 4 C -0.554 4.554 5 H 0.049 0.951 6 C -0.190 4.190 7 N -0.594 5.594 8 Si 0.783 3.217 9 H -0.189 1.189 10 H -0.229 1.229 11 H -0.154 1.154 12 C 0.318 3.682 13 O -0.453 6.453 14 N -0.371 5.371 15 C 0.052 3.948 16 H 0.077 0.923 17 C -0.157 4.157 18 C 0.004 3.996 19 O -0.397 6.397 20 C -0.106 4.106 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.165 4.165 24 C -0.161 4.161 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.248 0.752 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.240 0.760 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.004 5.948 -22.369 23.340 hybrid contribution -0.074 -0.073 1.716 1.719 sum -3.078 5.876 -20.653 21.692 Atomic orbital electron populations 1.22006 0.94733 1.01410 1.01419 1.19265 0.95179 0.97463 0.91307 0.91634 1.21094 1.31333 1.12727 0.90261 0.95061 1.26008 0.97496 1.00610 0.94931 1.70078 1.47798 1.42824 0.98691 0.85735 0.78776 0.79255 0.77958 1.18851 1.22910 1.15396 1.20880 0.78525 0.83644 0.85190 1.90570 1.39370 1.28132 1.87240 1.46037 1.54229 1.32424 1.04429 1.21021 0.96778 0.92190 0.84783 0.92259 1.21938 1.01131 0.94537 0.98121 1.22249 0.91652 0.87944 0.97799 1.86301 1.67110 1.34767 1.51566 1.22005 1.01104 0.94472 0.93030 1.22431 0.99688 0.98011 0.95413 1.22477 0.98980 0.97233 0.96860 1.22374 0.97487 1.00925 0.95695 1.22225 0.96819 0.98411 0.98690 0.93798 0.89709 0.93800 0.92508 0.75224 0.90296 0.89147 0.95294 0.95406 0.76050 0.88430 0.92268 0.89884 0.90179 0.91051 0.90813 0.92985 0.90202 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 8.57 71.98 0.62 -4.61 16 2 C -0.01 -0.47 2.23 -12.29 -0.03 -0.50 16 3 H 0.07 2.76 7.20 -2.39 -0.02 2.75 16 4 C -0.52 -30.53 8.96 25.60 0.23 -30.30 16 5 H 0.03 2.18 7.00 -2.91 -0.02 2.16 16 6 C 0.01 0.34 5.45 84.65 0.46 0.80 16 7 N -0.95 -61.27 13.96 21.45 0.30 -60.97 16 8 Si 0.96 43.15 24.37 68.60 1.67 44.82 16 9 H -0.26 -11.12 6.87 99.48 0.68 -10.44 16 10 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 11 H -0.23 -8.98 6.53 99.48 0.65 -8.33 16 12 C 0.53 22.08 5.72 87.66 0.50 22.59 16 13 O -0.57 -29.15 12.60 -3.02 -0.04 -29.19 16 14 N -0.72 -21.00 4.28 -442.53 -1.89 -22.89 16 15 C 0.16 4.05 1.50 44.99 0.07 4.11 16 16 H 0.06 1.90 7.55 -2.38 -0.02 1.88 16 17 C -0.12 -3.09 5.14 30.59 0.16 -2.93 16 18 C 0.08 2.75 5.65 71.98 0.41 3.16 16 19 O -0.59 -18.20 13.66 -148.98 -2.03 -20.23 16 20 C -0.09 -1.55 2.56 -10.07 -0.03 -1.57 16 21 C -0.12 -1.81 5.23 31.67 0.17 -1.65 16 22 C -0.12 -1.59 6.91 31.88 0.22 -1.37 16 23 C -0.13 -2.09 6.83 31.67 0.22 -1.88 16 24 C -0.12 -2.29 6.19 31.32 0.19 -2.09 16 25 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.08 2.32 7.56 -2.39 -0.02 2.30 16 27 H 0.04 1.70 3.27 -2.38 -0.01 1.69 16 28 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 29 H 0.41 9.29 8.02 -92.71 -0.74 8.55 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.09 2.06 7.13 -2.38 -0.02 2.04 16 32 H 0.03 1.08 7.85 -2.39 -0.02 1.06 16 33 H 0.03 1.12 5.64 -2.39 -0.01 1.10 16 34 H 0.39 9.49 9.12 -74.06 -0.68 8.81 16 35 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.06 1.06 7.77 -2.39 -0.02 1.04 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.05 1.10 7.37 -2.39 -0.02 1.08 16 Total: -1.00 -76.71 327.37 0.70 -76.01 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -0.49 Total: 28.70 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 3.18 Total: -16.25 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -1.59 Total: -83.86 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -2.07 Total: -49.42 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.67 Total: 44.82 kcal Total: -76.71 0.70 -76.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889119366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.874 kcal (2) G-P(sol) polarization free energy of solvation -76.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds