Wall clock time and date at job start Mon Mar 30 2020 00:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 C 1.50701 * 109.47433 * 120.00046 * 2 1 3 13 13 O 1.21277 * 119.99812 * 120.00556 * 12 2 1 14 14 N 1.34776 * 119.99977 * 300.00436 * 12 2 1 15 15 C 1.46500 * 120.00321 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47327 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47931 * 60.00410 * 16 15 14 18 18 C 1.53091 * 109.47863 * 180.02562 * 16 15 14 19 19 C 1.53175 * 109.15993 * 177.57975 * 18 16 15 20 20 C 1.53171 * 109.05092 * 303.03637 * 19 18 16 21 21 C 1.53003 * 109.52408 * 297.07221 * 20 19 18 22 22 C 1.53003 * 109.52798 * 176.87918 * 20 19 18 23 23 C 1.53100 * 109.16028 * 56.97318 * 20 19 18 24 24 O 1.42900 * 109.41435 * 302.39232 * 23 20 19 25 25 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 26 26 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 27 27 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 0.97005 * 120.00166 * 359.97438 * 14 12 2 30 30 H 1.08997 * 109.46710 * 300.00269 * 15 14 12 31 31 H 1.09007 * 109.46563 * 59.99810 * 15 14 12 32 32 H 1.09001 * 109.52464 * 297.50068 * 18 16 15 33 33 H 1.09003 * 109.52126 * 57.69226 * 18 16 15 34 34 H 1.09008 * 109.54256 * 183.16579 * 19 18 16 35 35 H 1.09002 * 109.60597 * 62.95604 * 19 18 16 36 36 H 1.09005 * 109.47146 * 179.67917 * 21 20 19 37 37 H 1.08996 * 109.46855 * 299.67928 * 21 20 19 38 38 H 1.09001 * 109.46880 * 59.68035 * 21 20 19 39 39 H 1.08999 * 109.47050 * 300.31999 * 22 20 19 40 40 H 1.08995 * 109.46694 * 60.31610 * 22 20 19 41 41 H 1.09001 * 109.47118 * 180.31604 * 22 20 19 42 42 H 1.09000 * 109.48136 * 182.40973 * 23 20 19 43 43 H 1.09002 * 109.47650 * 62.37971 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8075 -1.1187 -4.0078 11 1 1.8282 -2.5196 -4.0082 12 6 2.0324 -0.7104 1.2304 13 8 2.7298 -1.6964 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 2.1947 -0.9409 3.6507 16 6 1.6852 -0.2193 4.9000 17 1 0.5953 -0.2185 4.9002 18 6 2.1956 -0.9407 6.1501 19 6 1.7320 -0.1782 7.3951 20 6 2.2337 1.2666 7.3120 21 6 3.7637 1.2777 7.3169 22 6 1.7115 2.0591 8.5121 23 6 1.7217 1.9027 6.0169 24 8 2.1628 1.1276 4.9004 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 0.7087 1.1613 -3.4844 29 1 1.1493 0.5389 2.5436 30 1 1.8310 -1.9684 3.6505 31 1 3.2848 -0.9412 3.6508 32 1 1.7963 -1.9547 6.1740 33 1 3.2848 -0.9775 6.1303 34 1 2.1389 -0.6547 8.2870 35 1 0.6431 -0.1840 7.4432 36 1 4.1198 2.3059 7.2521 37 1 4.1273 0.8248 8.2392 38 1 4.1339 0.7105 6.4630 39 1 0.6216 2.0477 8.5085 40 1 2.0765 1.6056 9.4336 41 1 2.0644 3.0885 8.4492 42 1 2.1109 2.9173 5.9316 43 1 0.6322 1.9312 6.0321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893330898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:21 Heat of formation + Delta-G solvation = -132.881147 kcal Electronic energy + Delta-G solvation = -21316.353063 eV Core-core repulsion = 18166.575746 eV Total energy + Delta-G solvation = -3149.777317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.13280 -40.29724 -36.71296 -35.76733 -35.37089 -33.44390 -32.32665 -29.11583 -28.17081 -27.19281 -26.75729 -25.07532 -23.65320 -22.60191 -21.03620 -19.74899 -18.38749 -17.90439 -17.44543 -16.83621 -16.60587 -16.25274 -15.95654 -15.91048 -15.15867 -14.97783 -14.66721 -14.36251 -14.22696 -13.71078 -13.55168 -13.29930 -13.01667 -12.96017 -12.87736 -12.74214 -12.69257 -12.58335 -12.43005 -12.18874 -12.01007 -11.97154 -11.77473 -11.34877 -11.10849 -11.03875 -10.61029 -10.37904 -10.20753 -9.95043 -8.14081 -6.24870 1.41400 1.43469 1.51987 1.94634 2.35438 2.53321 2.78594 3.15125 3.66662 3.78767 3.83902 3.94818 4.07755 4.11853 4.36165 4.41208 4.59291 4.63180 4.66149 4.70940 4.76076 4.79120 4.80944 4.89797 4.95663 4.96928 5.03102 5.03894 5.06313 5.14976 5.22254 5.33019 5.41899 5.50531 5.54019 5.59981 5.75736 5.95220 6.22374 6.30696 6.75009 6.87407 7.40500 7.55686 8.91733 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.042404 B = 0.003547 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.157585 B = 7892.440182 C = 8114.161773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.024 3.976 3 H 0.038 0.962 4 C -0.532 4.532 5 H 0.048 0.952 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.957 3.043 9 H -0.273 1.273 10 H -0.277 1.277 11 H -0.275 1.275 12 C 0.519 3.481 13 O -0.590 6.590 14 N -0.720 5.720 15 C 0.127 3.873 16 C 0.089 3.911 17 H 0.075 0.925 18 C -0.147 4.147 19 C -0.106 4.106 20 C -0.100 4.100 21 C -0.137 4.137 22 C -0.136 4.136 23 C 0.064 3.936 24 O -0.394 6.394 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.024 0.976 28 H 0.265 0.735 29 H 0.409 0.591 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.045 0.955 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 3.018 23.933 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.002 3.998 3 H 0.055 0.945 4 C -0.570 4.570 5 H 0.067 0.933 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.783 3.217 9 H -0.198 1.198 10 H -0.202 1.202 11 H -0.200 1.200 12 C 0.309 3.691 13 O -0.470 6.470 14 N -0.373 5.373 15 C 0.004 3.996 16 C 0.031 3.969 17 H 0.093 0.907 18 C -0.185 4.185 19 C -0.143 4.143 20 C -0.100 4.100 21 C -0.194 4.194 22 C -0.193 4.193 23 C -0.012 4.012 24 O -0.313 6.313 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.245 0.755 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.353 2.509 23.592 23.764 hybrid contribution 0.131 -0.139 -0.853 0.874 sum -1.222 2.370 22.739 22.895 Atomic orbital electron populations 1.21540 0.94923 0.99452 1.01656 1.18798 0.95478 0.95773 0.89704 0.94456 1.21282 1.31715 1.12816 0.91200 0.93327 1.25623 0.95173 0.95764 1.01467 1.69951 1.37164 1.23586 1.24381 0.85626 0.78639 0.78755 0.78708 1.19822 1.20221 1.20043 1.21549 0.78242 0.83696 0.85656 1.90491 1.40085 1.28857 1.87599 1.45905 1.54238 1.32438 1.04727 1.21394 0.99048 0.95981 0.83222 1.22268 0.98264 0.82795 0.93545 0.90670 1.22162 1.02158 1.00201 0.93943 1.21651 1.01247 0.94015 0.97430 1.21204 0.96479 0.96311 0.96056 1.21810 0.94345 1.01737 1.01546 1.21757 1.01260 0.99795 0.96485 1.22832 0.98868 0.94779 0.84709 1.87979 1.74554 1.22698 1.46072 0.93098 0.91063 0.95699 0.92568 0.75473 0.90531 0.93103 0.89470 0.91256 0.90193 0.90853 0.92770 0.91943 0.93598 0.91919 0.91675 0.92156 0.88627 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.87 71.98 0.64 -4.88 16 2 C 0.02 1.24 2.64 -12.29 -0.03 1.21 16 3 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 4 C -0.53 -31.82 8.37 25.60 0.21 -31.61 16 5 H 0.05 3.09 6.75 -2.91 -0.02 3.08 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -52.32 11.32 21.45 0.24 -52.08 16 8 Si 0.96 45.85 29.54 68.60 2.03 47.88 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 C 0.52 25.11 7.15 87.66 0.63 25.73 16 13 O -0.59 -32.80 15.46 -3.02 -0.05 -32.84 16 14 N -0.72 -26.34 5.34 -463.06 -2.47 -28.81 16 15 C 0.13 3.87 5.37 86.38 0.46 4.33 16 16 C 0.09 1.98 2.73 30.62 0.08 2.06 16 17 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 18 C -0.15 -2.53 5.06 30.68 0.16 -2.38 16 19 C -0.11 -1.42 4.81 30.71 0.15 -1.28 16 20 C -0.10 -1.42 0.78 -52.09 -0.04 -1.47 16 21 C -0.14 -2.20 8.08 71.98 0.58 -1.62 16 22 C -0.14 -1.42 8.49 71.98 0.61 -0.81 16 23 C 0.06 1.13 5.54 72.02 0.40 1.53 16 24 O -0.39 -9.60 9.58 -148.98 -1.43 -11.03 16 25 H 0.05 1.93 7.56 -2.39 -0.02 1.91 16 26 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 27 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.27 14.38 8.31 -92.70 -0.77 13.61 16 29 H 0.41 13.21 7.77 -92.70 -0.72 12.49 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.33 6.62 -2.39 -0.02 1.31 16 34 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.04 0.92 6.13 -2.39 -0.01 0.91 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -69.36 337.08 2.88 -66.48 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.26 Total: 18.05 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 4.30 Total: -7.65 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -2.23 Total: -80.89 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -1.47 Total: -43.87 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -69.36 2.88 -66.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893330898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.396 kcal (2) G-P(sol) polarization free energy of solvation -69.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds