Wall clock time and date at job start Mon Mar 30 2020 00:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47122 * 2 1 4 4 C 1.50700 * 109.47068 * 239.99611 * 2 1 3 5 5 H 1.07996 * 120.00280 * 239.99651 * 4 2 1 6 6 C 1.37883 * 119.99857 * 60.00709 * 4 2 1 7 7 N 1.31515 * 119.99933 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99845 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47299 * 59.99803 * 8 6 4 10 10 H 1.48498 * 109.47352 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47390 * 299.99652 * 8 6 4 12 12 C 1.50699 * 109.46923 * 119.99939 * 2 1 3 13 13 O 1.21282 * 120.00332 * 120.00172 * 12 2 1 14 14 N 1.34775 * 120.00007 * 299.99844 * 12 2 1 15 15 C 1.46498 * 120.00039 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47366 * 180.02562 * 15 14 12 17 17 H 1.09006 * 109.48242 * 305.02382 * 16 15 14 18 18 C 1.53089 * 109.48481 * 185.00071 * 16 15 14 19 19 C 1.53177 * 109.16584 * 182.40776 * 18 16 15 20 20 C 1.53179 * 109.10692 * 56.93603 * 19 18 16 21 21 C 1.52999 * 109.52406 * 62.97030 * 20 19 18 22 22 C 1.53002 * 109.51846 * 183.16031 * 20 19 18 23 23 C 1.53100 * 109.15719 * 303.14927 * 20 19 18 24 24 O 1.42902 * 109.48115 * 65.05500 * 16 15 14 25 25 H 1.09003 * 109.47832 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47412 * 300.00300 * 1 2 3 27 27 H 1.09004 * 109.46928 * 60.00272 * 1 2 3 28 28 H 0.96994 * 119.99592 * 180.02562 * 7 6 4 29 29 H 0.97003 * 120.00242 * 0.02562 * 14 12 2 30 30 H 1.09001 * 109.47414 * 60.00070 * 15 14 12 31 31 H 1.08996 * 109.47306 * 300.00205 * 15 14 12 32 32 H 1.08999 * 109.52464 * 62.50338 * 18 16 15 33 33 H 1.08995 * 109.57222 * 302.34410 * 18 16 15 34 34 H 1.09002 * 109.54459 * 176.84823 * 19 18 16 35 35 H 1.08999 * 109.54390 * 297.02744 * 19 18 16 36 36 H 1.09006 * 109.47079 * 59.99923 * 21 20 19 37 37 H 1.08998 * 109.46952 * 179.97438 * 21 20 19 38 38 H 1.08993 * 109.46892 * 299.99948 * 21 20 19 39 39 H 1.08992 * 109.47446 * 60.00441 * 22 20 19 40 40 H 1.09005 * 109.46702 * 180.02562 * 22 20 19 41 41 H 1.09000 * 109.47086 * 299.99487 * 22 20 19 42 42 H 1.09002 * 109.41285 * 297.49784 * 23 20 19 43 43 H 1.08998 * 109.49112 * 177.50691 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8280 -2.5199 -4.0081 10 1 1.8270 -0.4201 -5.2204 11 1 3.8075 -1.1191 -4.0077 12 6 2.0322 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1193 14 7 1.7066 -0.2499 2.4546 15 6 2.1954 -0.9402 3.6507 16 6 1.6848 -0.2193 4.9000 17 1 1.9719 0.8313 4.8564 18 6 2.2954 -0.8641 6.1470 19 6 1.7334 -0.1766 7.3951 20 6 0.2050 -0.2775 7.3777 21 6 -0.2112 -1.7482 7.4459 22 6 -0.3706 0.4744 8.5795 23 6 -0.3248 0.3428 6.0822 24 8 0.2608 -0.3222 4.9610 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7083 1.1608 -3.4844 29 1 1.1487 0.5386 2.5436 30 1 3.2854 -0.9398 3.6506 31 1 1.8325 -1.9679 3.6509 32 1 3.3789 -0.7476 6.1238 33 1 2.0434 -1.9243 6.1705 34 1 2.1211 -0.6675 8.2877 35 1 2.0295 0.8724 7.3981 36 1 0.1714 -2.1918 8.3652 37 1 -1.2988 -1.8190 7.4340 38 1 0.1975 -2.2815 6.5877 39 1 -0.0756 1.5224 8.5278 40 1 -1.4582 0.4017 8.5666 41 1 0.0116 0.0343 9.5005 42 1 -0.0641 1.4008 6.0540 43 1 -1.4087 0.2343 6.0437 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893330899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:23 Heat of formation + Delta-G solvation = -133.014163 kcal Electronic energy + Delta-G solvation = -21327.039144 eV Core-core repulsion = 18177.256059 eV Total energy + Delta-G solvation = -3149.783085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12842 -40.30062 -36.71029 -35.76930 -35.38611 -33.44032 -32.32695 -29.11733 -28.16754 -27.19513 -26.75226 -25.07879 -23.65819 -22.61304 -21.05422 -19.72839 -18.39038 -17.89511 -17.45411 -16.84889 -16.60739 -16.30297 -15.94828 -15.81924 -15.22217 -14.96724 -14.57111 -14.48908 -14.18874 -13.69915 -13.54209 -13.31382 -13.02014 -12.96266 -12.87640 -12.75486 -12.68602 -12.58471 -12.42923 -12.19417 -12.00920 -11.97300 -11.77567 -11.34924 -11.10736 -11.03992 -10.61343 -10.38399 -10.20262 -9.95837 -8.14168 -6.24868 1.41444 1.43526 1.52001 1.94122 2.35822 2.53874 2.77347 3.15092 3.66485 3.78423 3.83880 3.95615 4.07649 4.11569 4.35822 4.41463 4.59129 4.63407 4.64769 4.71007 4.75142 4.79171 4.81437 4.90214 4.95677 4.97223 5.03167 5.04031 5.06380 5.14995 5.22220 5.33074 5.41922 5.50084 5.54057 5.59727 5.75515 5.94243 6.21958 6.30840 6.74633 6.87091 7.40428 7.55360 8.91676 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.044227 B = 0.003559 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.938513 B = 7865.883008 C = 8176.013207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.024 3.976 3 H 0.042 0.958 4 C -0.532 4.532 5 H 0.048 0.952 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.957 3.043 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.275 1.275 12 C 0.519 3.481 13 O -0.590 6.590 14 N -0.721 5.721 15 C 0.127 3.873 16 C 0.089 3.911 17 H 0.075 0.925 18 C -0.146 4.146 19 C -0.106 4.106 20 C -0.100 4.100 21 C -0.137 4.137 22 C -0.136 4.136 23 C 0.064 3.936 24 O -0.393 6.393 25 H 0.019 0.981 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.265 0.735 29 H 0.409 0.591 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.045 0.955 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 2.372 23.954 24.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.003 3.997 3 H 0.060 0.940 4 C -0.570 4.570 5 H 0.067 0.933 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.201 1.201 12 C 0.309 3.691 13 O -0.470 6.470 14 N -0.374 5.374 15 C 0.004 3.996 16 C 0.031 3.969 17 H 0.093 0.907 18 C -0.185 4.185 19 C -0.144 4.144 20 C -0.100 4.100 21 C -0.194 4.194 22 C -0.193 4.193 23 C -0.012 4.012 24 O -0.312 6.312 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.245 0.755 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.408 1.689 23.619 23.801 hybrid contribution 0.176 -0.098 -0.854 0.877 sum -2.232 1.591 22.765 22.929 Atomic orbital electron populations 1.21534 0.95184 0.99228 1.01576 1.18798 0.95224 0.95973 0.89682 0.94015 1.21283 1.31732 1.12811 0.91199 0.93327 1.25619 0.95167 0.95758 1.01457 1.69945 1.37137 1.23599 1.24391 0.85630 0.78712 0.78684 0.78722 1.20225 1.19821 1.20055 1.21557 0.78227 0.83709 0.85654 1.90494 1.40233 1.28679 1.87601 1.45928 1.54151 1.32541 1.04768 1.21377 0.98761 0.96305 0.83197 1.22261 0.81753 0.99325 0.93525 0.90715 1.22156 1.01386 1.00952 0.93960 1.21654 0.93957 1.01289 0.97462 1.21204 0.96110 0.96685 0.96046 1.21809 1.01117 0.94990 1.01521 1.21755 1.01032 1.00034 0.96468 1.22826 0.98304 0.95519 0.84545 1.87988 1.19614 1.76654 1.46991 0.96143 0.93238 0.90996 0.92558 0.75501 0.90503 0.93086 0.89518 0.91204 0.90184 0.90905 0.91957 0.92735 0.93575 0.91944 0.92135 0.91669 0.92275 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.87 71.98 0.64 -4.97 16 2 C 0.02 1.28 2.64 -12.29 -0.03 1.24 16 3 H 0.04 2.24 8.14 -2.38 -0.02 2.22 16 4 C -0.53 -31.77 8.37 25.60 0.21 -31.56 16 5 H 0.05 3.09 6.75 -2.91 -0.02 3.07 16 6 C 0.02 1.09 5.30 84.66 0.45 1.54 16 7 N -0.91 -52.21 11.32 21.45 0.24 -51.97 16 8 Si 0.96 45.80 29.54 68.60 2.03 47.83 16 9 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 C 0.52 25.04 7.15 87.66 0.63 25.67 16 13 O -0.59 -32.75 15.46 -3.04 -0.05 -32.80 16 14 N -0.72 -26.26 5.40 -463.07 -2.50 -28.76 16 15 C 0.13 3.87 5.34 86.38 0.46 4.33 16 16 C 0.09 1.98 2.68 30.62 0.08 2.06 16 17 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 18 C -0.15 -2.54 5.05 30.68 0.16 -2.38 16 19 C -0.11 -1.43 4.81 30.71 0.15 -1.28 16 20 C -0.10 -1.42 0.78 -52.09 -0.04 -1.46 16 21 C -0.14 -2.18 8.08 71.98 0.58 -1.60 16 22 C -0.14 -1.41 8.49 71.98 0.61 -0.80 16 23 C 0.06 1.13 5.54 72.02 0.40 1.53 16 24 O -0.39 -9.57 9.78 -148.98 -1.46 -11.03 16 25 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 1.95 7.56 -2.39 -0.02 1.94 16 27 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 28 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.41 13.06 7.89 -92.71 -0.73 12.32 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.33 6.64 -2.39 -0.02 1.32 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.05 0.92 6.15 -2.39 -0.01 0.90 16 39 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -69.22 337.40 2.80 -66.41 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.24 Total: 17.99 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 4.29 Total: -7.68 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -2.26 Total: -80.72 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -1.50 Total: -43.82 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -69.22 2.80 -66.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893330899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.602 kcal (2) G-P(sol) polarization free energy of solvation -69.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds