Wall clock time and date at job start Mon Mar 30 2020 00:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00357 * 119.99585 * 4 2 1 6 6 C 1.37876 * 119.99656 * 299.99978 * 4 2 1 7 7 N 1.31514 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47186 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47137 * 120.00134 * 8 6 4 11 11 H 1.48499 * 109.47678 * 240.00198 * 8 6 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 C 1.52997 * 109.47555 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.47645 * 60.00323 * 16 15 14 18 18 C 1.53089 * 109.48265 * 180.02562 * 16 15 14 19 19 C 1.53179 * 109.16410 * 177.58026 * 18 16 15 20 20 C 1.53179 * 109.04808 * 303.04279 * 19 18 16 21 21 C 1.53007 * 109.51877 * 297.06533 * 20 19 18 22 22 C 1.52996 * 109.52502 * 176.87575 * 20 19 18 23 23 C 1.53098 * 109.16279 * 56.96934 * 20 19 18 24 24 O 1.42904 * 109.41425 * 302.39136 * 23 20 19 25 25 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 26 26 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 27 27 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 28 28 H 0.97009 * 119.99880 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 30 30 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 31 31 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 32 32 H 1.08997 * 109.52615 * 297.49817 * 18 16 15 33 33 H 1.09003 * 109.52325 * 57.68845 * 18 16 15 34 34 H 1.08990 * 109.54859 * 183.16601 * 19 18 16 35 35 H 1.09005 * 109.60358 * 62.95000 * 19 18 16 36 36 H 1.08997 * 109.47066 * 179.68421 * 21 20 19 37 37 H 1.08995 * 109.46859 * 299.68542 * 21 20 19 38 38 H 1.08999 * 109.46904 * 59.68460 * 21 20 19 39 39 H 1.08994 * 109.47275 * 300.31229 * 22 20 19 40 40 H 1.09006 * 109.46789 * 60.31333 * 22 20 19 41 41 H 1.08997 * 109.46978 * 180.30935 * 22 20 19 42 42 H 1.09002 * 109.47353 * 182.41348 * 23 20 19 43 43 H 1.08991 * 109.47814 * 62.38007 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 3.1465 -2.2871 3.6037 10 1 3.1466 -0.1874 4.8164 11 1 1.1662 -1.5868 4.8160 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 6 1.6715 -0.2289 -4.9000 17 1 2.0356 0.7985 -4.9041 18 6 2.1760 -0.9544 -6.1501 19 6 1.6080 -0.2656 -7.3948 20 6 0.0789 -0.2545 -7.3061 21 6 -0.4437 -1.6925 -7.3055 22 6 -0.4974 0.4998 -8.5060 23 6 -0.3444 0.4442 -6.0113 24 8 0.2425 -0.2280 -4.8951 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7087 1.1612 3.4844 29 1 1.1446 0.5355 -2.5436 30 1 3.2755 -0.9477 -3.6550 31 1 1.8218 -1.9748 -3.6465 32 1 3.2650 -0.9175 -6.1781 33 1 1.8463 -1.9931 -6.1264 34 1 1.9176 -0.8107 -8.2865 35 1 1.9777 0.7585 -7.4469 36 1 -1.5315 -1.6838 -7.2367 37 1 -0.1419 -2.1891 -8.2276 38 1 -0.0299 -2.2291 -6.4517 39 1 -0.1220 1.5230 -8.5064 40 1 -0.1956 0.0016 -9.4274 41 1 -1.5853 0.5119 -8.4391 42 1 -1.4304 0.4172 -5.9220 43 1 -0.0067 1.4803 -6.0303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893330901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:27 Heat of formation + Delta-G solvation = -112.090403 kcal Electronic energy + Delta-G solvation = -21349.152339 eV Core-core repulsion = 18200.276576 eV Total energy + Delta-G solvation = -3148.875763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.21542 -38.56127 -35.74272 -34.10542 -33.62837 -32.29110 -30.39839 -28.02900 -27.54513 -25.94925 -25.04966 -23.85688 -22.15532 -21.50479 -19.40541 -18.84986 -16.57892 -16.42256 -16.08333 -15.61266 -15.28165 -15.08276 -14.53379 -14.35643 -14.20767 -13.75107 -13.46333 -12.85624 -12.72335 -12.65262 -12.44890 -12.18278 -12.05427 -12.02521 -11.61534 -11.40282 -11.25586 -11.05416 -10.96094 -10.67305 -10.61976 -10.58010 -10.33061 -10.15901 -9.89415 -9.49166 -8.87864 -8.52719 -8.31480 -8.24445 -5.96601 -3.99205 3.36555 3.43739 3.52478 3.62537 3.86255 3.98728 4.37065 4.47849 4.51796 4.55824 4.81097 4.90528 5.00922 5.14072 5.27153 5.35154 5.36605 5.40542 5.42332 5.51292 5.58143 5.62160 5.70827 5.75379 5.83010 5.88309 5.92611 6.03485 6.06017 6.23611 6.40796 6.73688 6.94759 7.03415 7.12120 7.23585 7.57375 7.84583 8.07350 8.25078 8.56413 9.10378 9.35649 9.66151 11.11082 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.043561 B = 0.003590 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.626320 B = 7796.919307 C = 8119.404582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.498 4.498 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.519 3.481 13 O -0.550 6.550 14 N -0.741 5.741 15 C 0.130 3.870 16 C 0.081 3.919 17 H 0.062 0.938 18 C -0.150 4.150 19 C -0.109 4.109 20 C -0.103 4.103 21 C -0.138 4.138 22 C -0.140 4.140 23 C 0.071 3.929 24 O -0.367 6.367 25 H 0.092 0.908 26 H 0.013 0.987 27 H 0.030 0.970 28 H 0.259 0.741 29 H 0.399 0.601 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.702 1.476 -22.387 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.308 3.692 13 O -0.427 6.427 14 N -0.395 5.395 15 C 0.005 3.995 16 C 0.022 3.978 17 H 0.080 0.920 18 C -0.188 4.188 19 C -0.147 4.147 20 C -0.103 4.103 21 C -0.195 4.195 22 C -0.197 4.197 23 C -0.006 4.006 24 O -0.286 6.286 25 H 0.110 0.890 26 H 0.032 0.968 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.232 0.768 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.364 0.758 -22.005 22.145 hybrid contribution 0.127 0.139 0.420 0.461 sum -2.237 0.897 -21.585 21.719 Atomic orbital electron populations 1.21719 0.96481 0.99801 1.00882 1.18867 0.94200 0.96766 0.89408 0.93124 1.21212 1.30687 1.12702 0.89052 0.90756 1.24956 0.95198 0.95111 0.99093 1.69893 1.37296 1.23226 1.23301 0.86412 0.78589 0.79790 0.82543 1.19574 1.21115 1.21091 1.21955 0.78407 0.84274 0.84522 1.90520 1.38330 1.26978 1.86861 1.46158 1.55366 1.32719 1.05266 1.21195 0.98453 0.96753 0.83069 1.22367 0.81798 0.98948 0.94644 0.91982 1.22184 1.01161 1.01065 0.94363 1.21647 0.94203 1.00877 0.97969 1.21221 0.95862 0.97078 0.96128 1.21824 1.00840 0.94918 1.01944 1.21792 1.00881 0.99887 0.97148 1.22632 0.98493 0.94571 0.84927 1.88032 1.18820 1.77428 1.44279 0.88984 0.96778 0.95073 0.93111 0.76751 0.90925 0.91565 0.90617 0.90401 0.91452 0.91837 0.92724 0.93008 0.91550 0.92612 0.92428 0.92409 0.88913 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.86 37.16 0.33 -2.81 16 2 C 0.03 0.74 2.64 -92.92 -0.25 0.49 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.55 8.37 -34.44 -0.29 -14.84 16 5 H 0.07 2.29 6.75 -52.49 -0.35 1.94 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.74 11.32 55.43 0.63 -25.11 16 8 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 9 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.52 12.36 7.15 -10.98 -0.08 12.28 16 13 O -0.55 -14.90 15.46 5.55 0.09 -14.81 16 14 N -0.74 -13.70 5.34 -60.29 -0.32 -14.02 16 15 C 0.13 2.00 5.37 -4.04 -0.02 1.98 16 16 C 0.08 0.95 2.73 -26.69 -0.07 0.88 16 17 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 18 C -0.15 -1.43 5.06 -26.59 -0.13 -1.56 16 19 C -0.11 -0.89 4.81 -26.55 -0.13 -1.01 16 20 C -0.10 -0.85 0.78 -154.36 -0.12 -0.97 16 21 C -0.14 -1.21 8.08 37.16 0.30 -0.91 16 22 C -0.14 -0.93 8.49 37.16 0.32 -0.62 16 23 C 0.07 0.69 5.54 37.21 0.21 0.90 16 24 O -0.37 -4.71 9.58 -35.23 -0.34 -5.05 16 25 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 26 H 0.01 0.28 7.55 -51.93 -0.39 -0.12 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 29 H 0.40 6.68 7.76 -40.82 -0.32 6.36 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.78 6.62 -51.93 -0.34 0.44 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.69 6.13 -51.93 -0.32 0.37 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 337.05 15.07 5.08 5.08 Total: -1.00 -32.03 337.05 -7.44 -39.47 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.52 Total: 1.89 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -0.03 Total: -4.67 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.31 Total: -39.14 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.25 Total: -19.86 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.03 -7.44 -39.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893330901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.623 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds