Wall clock time and date at job start Mon Mar 30 2020 00:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00357 * 119.99585 * 4 2 1 6 6 C 1.37876 * 119.99656 * 299.99978 * 4 2 1 7 7 N 1.31514 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47186 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47137 * 120.00134 * 8 6 4 11 11 H 1.48499 * 109.47678 * 240.00198 * 8 6 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 C 1.52997 * 109.47555 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.47645 * 60.00323 * 16 15 14 18 18 C 1.53089 * 109.48265 * 180.02562 * 16 15 14 19 19 C 1.53179 * 109.16410 * 177.58026 * 18 16 15 20 20 C 1.53179 * 109.04808 * 303.04279 * 19 18 16 21 21 C 1.53007 * 109.51877 * 297.06533 * 20 19 18 22 22 C 1.52996 * 109.52502 * 176.87575 * 20 19 18 23 23 C 1.53098 * 109.16279 * 56.96934 * 20 19 18 24 24 O 1.42904 * 109.41425 * 302.39136 * 23 20 19 25 25 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 26 26 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 27 27 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 28 28 H 0.97009 * 119.99880 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 30 30 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 31 31 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 32 32 H 1.08997 * 109.52615 * 297.49817 * 18 16 15 33 33 H 1.09003 * 109.52325 * 57.68845 * 18 16 15 34 34 H 1.08990 * 109.54859 * 183.16601 * 19 18 16 35 35 H 1.09005 * 109.60358 * 62.95000 * 19 18 16 36 36 H 1.08997 * 109.47066 * 179.68421 * 21 20 19 37 37 H 1.08995 * 109.46859 * 299.68542 * 21 20 19 38 38 H 1.08999 * 109.46904 * 59.68460 * 21 20 19 39 39 H 1.08994 * 109.47275 * 300.31229 * 22 20 19 40 40 H 1.09006 * 109.46789 * 60.31333 * 22 20 19 41 41 H 1.08997 * 109.46978 * 180.30935 * 22 20 19 42 42 H 1.09002 * 109.47353 * 182.41348 * 23 20 19 43 43 H 1.08991 * 109.47814 * 62.38007 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 3.1465 -2.2871 3.6037 10 1 3.1466 -0.1874 4.8164 11 1 1.1662 -1.5868 4.8160 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 6 1.6715 -0.2289 -4.9000 17 1 2.0356 0.7985 -4.9041 18 6 2.1760 -0.9544 -6.1501 19 6 1.6080 -0.2656 -7.3948 20 6 0.0789 -0.2545 -7.3061 21 6 -0.4437 -1.6925 -7.3055 22 6 -0.4974 0.4998 -8.5060 23 6 -0.3444 0.4442 -6.0113 24 8 0.2425 -0.2280 -4.8951 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7087 1.1612 3.4844 29 1 1.1446 0.5355 -2.5436 30 1 3.2755 -0.9477 -3.6550 31 1 1.8218 -1.9748 -3.6465 32 1 3.2650 -0.9175 -6.1781 33 1 1.8463 -1.9931 -6.1264 34 1 1.9176 -0.8107 -8.2865 35 1 1.9777 0.7585 -7.4469 36 1 -1.5315 -1.6838 -7.2367 37 1 -0.1419 -2.1891 -8.2276 38 1 -0.0299 -2.2291 -6.4517 39 1 -0.1220 1.5230 -8.5064 40 1 -0.1956 0.0016 -9.4274 41 1 -1.5853 0.5119 -8.4391 42 1 -1.4304 0.4172 -5.9220 43 1 -0.0067 1.4803 -6.0303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893330901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:26 Heat of formation + Delta-G solvation = -132.897617 kcal Electronic energy + Delta-G solvation = -21350.054608 eV Core-core repulsion = 18200.276576 eV Total energy + Delta-G solvation = -3149.778031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.13049 -40.29592 -36.71120 -35.76930 -35.36824 -33.44405 -32.32549 -29.11529 -28.16906 -27.19676 -26.75217 -25.08051 -23.65321 -22.59970 -21.03904 -19.74058 -18.39495 -17.89920 -17.45137 -16.84004 -16.60656 -16.29922 -15.94744 -15.81242 -15.21873 -14.96928 -14.58313 -14.48408 -14.20768 -13.68171 -13.54661 -13.31280 -13.01741 -12.96586 -12.87391 -12.74821 -12.66912 -12.58243 -12.42893 -12.19155 -12.02515 -11.97662 -11.77305 -11.34761 -11.10657 -11.02016 -10.61224 -10.37809 -10.20600 -9.95019 -8.14370 -6.24886 1.39969 1.41518 1.55552 1.94250 2.35983 2.53395 2.78735 3.14865 3.66779 3.78892 3.84071 3.95004 4.07898 4.11824 4.36256 4.41537 4.58959 4.63502 4.65942 4.71089 4.75224 4.79307 4.81511 4.90380 4.95860 4.97504 5.03245 5.04117 5.06375 5.15128 5.22361 5.33168 5.42037 5.50348 5.54220 5.59975 5.75678 5.94436 6.22005 6.30977 6.75369 6.87631 7.40649 7.55754 8.91804 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.043561 B = 0.003590 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.626320 B = 7796.919307 C = 8119.404582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.024 3.976 3 H 0.042 0.958 4 C -0.529 4.529 5 H 0.048 0.952 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.957 3.043 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.274 1.274 12 C 0.519 3.481 13 O -0.590 6.590 14 N -0.720 5.720 15 C 0.127 3.873 16 C 0.089 3.911 17 H 0.075 0.925 18 C -0.147 4.147 19 C -0.106 4.106 20 C -0.100 4.100 21 C -0.137 4.137 22 C -0.136 4.136 23 C 0.064 3.936 24 O -0.393 6.393 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.020 0.980 28 H 0.265 0.735 29 H 0.409 0.591 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.969 2.294 -23.912 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.003 3.997 3 H 0.060 0.940 4 C -0.568 4.568 5 H 0.066 0.934 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.783 3.217 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.199 1.199 12 C 0.308 3.692 13 O -0.470 6.470 14 N -0.373 5.373 15 C 0.004 3.996 16 C 0.031 3.969 17 H 0.093 0.907 18 C -0.185 4.185 19 C -0.143 4.143 20 C -0.101 4.101 21 C -0.194 4.194 22 C -0.193 4.193 23 C -0.012 4.012 24 O -0.312 6.312 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.245 0.755 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.662 1.617 -23.574 23.779 hybrid contribution 0.174 -0.093 0.851 0.873 sum -2.487 1.524 -22.723 22.909 Atomic orbital electron populations 1.21528 0.95162 0.99227 1.01561 1.18809 0.95237 0.95981 0.89714 0.94036 1.21332 1.31550 1.12710 0.91175 0.93371 1.25622 0.95188 0.95778 1.01475 1.69964 1.37236 1.23646 1.24250 0.85517 0.78347 0.78581 0.79278 1.20457 1.19825 1.19901 1.21559 0.78226 0.83720 0.85664 1.90496 1.40280 1.28671 1.87600 1.45904 1.54145 1.32523 1.04732 1.21392 0.98799 0.96224 0.83232 1.22265 0.81780 0.99287 0.93536 0.90713 1.22161 1.01880 1.00472 0.93948 1.21651 0.93874 1.01396 0.97422 1.21205 0.96135 0.96644 0.96067 1.21808 1.00751 0.95327 1.01543 1.21756 1.01010 1.00042 0.96489 1.22829 0.98603 0.95021 0.84726 1.87983 1.19122 1.78160 1.45950 0.90999 0.93263 0.96127 0.92587 0.75470 0.90558 0.93089 0.89493 0.91249 0.90204 0.90873 0.92760 0.91961 0.93591 0.91931 0.91685 0.92148 0.88602 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.86 71.98 0.64 -4.96 16 2 C 0.02 1.24 2.64 -12.29 -0.03 1.21 16 3 H 0.04 2.23 8.14 -2.38 -0.02 2.22 16 4 C -0.53 -31.65 8.37 25.60 0.21 -31.44 16 5 H 0.05 3.08 6.75 -2.91 -0.02 3.06 16 6 C 0.02 1.05 5.30 84.65 0.45 1.50 16 7 N -0.91 -52.20 11.32 21.45 0.24 -51.96 16 8 Si 0.96 45.84 29.54 68.60 2.03 47.87 16 9 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 C 0.52 25.08 7.15 87.66 0.63 25.71 16 13 O -0.59 -32.84 15.46 -3.04 -0.05 -32.89 16 14 N -0.72 -26.32 5.34 -463.06 -2.47 -28.80 16 15 C 0.13 3.87 5.37 86.38 0.46 4.33 16 16 C 0.09 1.98 2.73 30.62 0.08 2.06 16 17 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 18 C -0.15 -2.53 5.06 30.68 0.16 -2.38 16 19 C -0.11 -1.43 4.81 30.71 0.15 -1.28 16 20 C -0.10 -1.42 0.78 -52.09 -0.04 -1.46 16 21 C -0.14 -2.19 8.08 71.98 0.58 -1.61 16 22 C -0.14 -1.42 8.49 71.98 0.61 -0.81 16 23 C 0.06 1.13 5.54 72.01 0.40 1.53 16 24 O -0.39 -9.54 9.58 -148.98 -1.43 -10.96 16 25 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 26 H 0.05 1.95 7.55 -2.39 -0.02 1.93 16 27 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 29 H 0.41 13.19 7.76 -92.71 -0.72 12.47 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.33 6.62 -2.39 -0.02 1.32 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.05 0.92 6.13 -2.39 -0.01 0.91 16 39 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 40 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -69.36 337.05 2.88 -66.49 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.26 Total: 17.85 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 4.30 Total: -7.60 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -2.23 Total: -80.75 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -1.47 Total: -43.85 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -69.36 2.88 -66.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893330901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.411 kcal (2) G-P(sol) polarization free energy of solvation -69.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds